Rroxscaffold_1G00026710

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000082
Physical Location & Seq
Reverse (-)
33678603 .. 33679166
564 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00026710.1

Sequence Viewer

Length: 564 bp
ATGGAGTGTTTTTCAGTTACAAGGCTAAGCTGCCCATTCAAGCAACCCGACGACGTCTTCCGCATACTCTCCTCCTGCAATGGTCTGGTATGTGCGACATCCCTAGACAGAGACTCCAGGTACTTCCCATCTAACCTGTACATCTGGAACCCTTCAACTGGATTCTTCAAAAAACTACCTGATTCCTTAAACGTTCAGCGTCTACGTTATTTTGGTTTTGGACATTTGTCGGCCACTGACGACTACAAAGGTATTGCCAAAATCGAGAAGAAACAGCGGGCCGAGATATTCTCATCGAGAGCGAACACTTGGAAAACGATCCAAGTCCCTTCCGATGTGGAGCCCTTCGGCGAGGGGTTTCTTTTCAATGAGGCACTTCATTGGATCAGTATTAAGCACTTTCCTAATTATATCATTGATGTCGTTGCCTTCGATTTGGCAAGGGAAGAGTTCCGAAAAATTCCTCTGCCTACTACTCTTAAAAATGCAGCGGCGCTTTCTTCTTTTAGAGGATGCTTGTGTGTCTTTGATTATGCGTACAAAACTGTTGGCTCTATTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

187

Amino Acids

21.41

Weight (kDa)

8.71

Isoelectric Point (pI)

37.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 7 - 179 6.1e-13 F-box associated beta propeller domain
FBA_1 PF07734 18 - 176 2.1e-13 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000082)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17540 FvH4_1g17540 FvH4_1g17540 FvH4_1g17540 FvH4_1g17550 FvH4_1g17560 FvH4_1g17570 FvH4_1g17570 FvH4_1g17570 FvH4_1g17581 FvH4_1g18380 FvH4_1g18391 FvH4_1g18430 FvH4_1g18470 FvH4_1g18480 FvH4_1g18480 FvH4_1g18480 FvH4_1g18870 FvH4_2g36701 FvH4_2g36701 FvH4_2g36710 FvH4_2g36711 FvH4_3g01100 FvH4_3g01100 FvH4_3g14940 FvH4_3g14941 FvH4_3g14950 FvH4_3g14952 FvH4_3g14954 FvH4_3g14954 FvH4_3g14954 FvH4_3g15782 FvH4_3g32340 FvH4_3g32350 FvH4_3g32390 FvH4_3g32390 FvH4_3g44560 FvH4_3g44581 FvH4_3g44650 FvH4_3g44660 FvH4_3g44671 FvH4_3g45110 FvH4_3g45120 FvH4_3g45161 FvH4_4g30361 FvH4_6g14790 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14972 FvH4_6g14980 FvH4_6g14980 FvH4_6g14981 FvH4_6g14990 FvH4_6g14991 FvH4_6g14991 FvH4_6g14993 FvH4_6g14993 FvH4_6g14994 FvH4_6g15010 FvH4_6g19961
malus_domestica MD09G1138900.v1.1
prunus_persica Prupe.6G214500_v2.0.a1 Prupe.6G214600_v2.0.a1 Prupe.6G214700_v2.0.a1 Prupe.6G214900_v2.0.a1 Prupe.6G215100_v2.0.a1 Prupe.7G008100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321661 RchiOBHm_Chr1g0378141 RchiOBHm_Chr2g0101031 RchiOBHm_Chr2g0107781 RchiOBHm_Chr2g0107801 RchiOBHm_Chr2g0107811 RchiOBHm_Chr2g0107821 RchiOBHm_Chr2g0107841 RchiOBHm_Chr2g0107851 RchiOBHm_Chr2g0107881 RchiOBHm_Chr2g0107891 RchiOBHm_Chr2g0109731 RchiOBHm_Chr2g0109761 RchiOBHm_Chr2g0109771 RchiOBHm_Chr2g0109781 RchiOBHm_Chr3g0468171 RchiOBHm_Chr3g0468191 RchiOBHm_Chr3g0475411 RchiOBHm_Chr5g0007501 RchiOBHm_Chr5g0024531 RchiOBHm_Chr5g0053901 RchiOBHm_Chr5g0059111 RchiOBHm_Chr5g0059201 RchiOBHm_Chr5g0059211 RchiOBHm_Chr5g0059291 RchiOBHm_Chr5g0059301 RchiOBHm_Chr5g0059321 RchiOBHm_Chr5g0059551 RchiOBHm_Chr5g0081341 RchiOBHm_Chr7g0211081
rosa_laevigata RLG00000003023 RLG00000017039 RLG00000017135 RLG00000017616 RLG00000017620 RLG00000017621 RLG00000017622 RLG00000017623 RLG00000017624 RLG00000017625 RLG00000017762 RLG00000017763 RLG00000017764 RLG00000017765 RLG00000024443 RLG00000026103 RLG00000031462 RLG00000035283 RLG00000036923 RLG00000036924 RLG00000036925
rosa_multiflora Rmu_co7981142.1_g000001 Rmu_co8037462.1_g000001 Rmu_co8043938.1_g000001 Rmu_co8085092.1_g000001 Rmu_co8243479.1_g000002 Rmu_co8254857.1_g000001 Rmu_co8270991.1_g000001 Rmu_co8304467.1_g000001 Rmu_co8322247.1_g000001 Rmu_sc0000186.1_g000008 Rmu_sc0000375.1_g000022 Rmu_sc0000625.1_g000006 Rmu_sc0001465.1_g000001 Rmu_sc0001484.1_g000034 Rmu_sc0001484.1_g000035 Rmu_sc0001484.1_g000036 Rmu_sc0001484.1_g000038 Rmu_sc0001484.1_g000041 Rmu_sc0001484.1_g000042 Rmu_sc0001793.1_g000054 Rmu_sc0001810.1_g000002 Rmu_sc0001810.1_g000003 Rmu_sc0001810.1_g000004 Rmu_sc0001862.1_g000003 Rmu_sc0002076.1_g000008 Rmu_sc0002076.1_g000009 Rmu_sc0002983.1_g000017 Rmu_sc0002983.1_g000035 Rmu_sc0002983.1_g000038 Rmu_sc0003121.1_g000002 Rmu_sc0003121.1_g000005 Rmu_sc0003121.1_g000006 Rmu_sc0003121.1_g000007 Rmu_sc0003659.1_g000007 Rmu_sc0004524.1_g000009 Rmu_sc0004524.1_g000010 Rmu_sc0004524.1_g000012 Rmu_sc0004650.1_g000003 Rmu_sc0006215.1_g000003 Rmu_sc0006889.1_g000020 Rmu_sc0006889.1_g000030 Rmu_sc0006959.1_g000021 Rmu_sc0007173.1_g000008 Rmu_sc0007698.1_g000019 Rmu_sc0007768.1_g000009 Rmu_sc0008992.1_g000002 Rmu_sc0008992.1_g000004 Rmu_sc0009575.1_g000001 Rmu_sc0009575.1_g000008 Rmu_sc0009650.1_g000002 Rmu_sc0009650.1_g000005 Rmu_sc0009650.1_g000009 Rmu_sc0012421.1_g000005 Rmu_sc0012471.1_g000023 Rmu_sc0012471.1_g000025 Rmu_sc0012670.1_g000002 Rmu_sc0012670.1_g000003 Rmu_sc0016637.1_g000005 Rmu_sc0018174.1_g000002 Rmu_sc0031424.1_g000001 Rmu_ssc0000182.1_g000007 Rmu_ssc0000182.1_g000010 Rmu_ssc0000432.1_g000029 Rmu_ssc0000432.1_g000035 Rmu_ssc0000432.1_g000036 Rmu_ssc0000432.1_g000042
rosa_roxburghii Rroxscaffold_153G00436690 Rroxscaffold_1G00002200 Rroxscaffold_1G00002220 Rroxscaffold_1G00021160 Rroxscaffold_1G00021240 Rroxscaffold_1G00021310 Rroxscaffold_1G00025950 Rroxscaffold_1G00026710 Rroxscaffold_1G00054720 Rroxscaffold_2G00104770 Rroxscaffold_2G00104780 Rroxscaffold_2G00133820 Rroxscaffold_2G00133950 Rroxscaffold_2G00133970 Rroxscaffold_2G00133980 Rroxscaffold_2G00133990 Rroxscaffold_2G00135690 Rroxscaffold_2G00135820 Rroxscaffold_2G00135850 Rroxscaffold_2G00135860 Rroxscaffold_2G00135890 Rroxscaffold_2G00135910 Rroxscaffold_2G00135920 Rroxscaffold_2G00135930 Rroxscaffold_2G00135940 Rroxscaffold_2G00141620 Rroxscaffold_3G00248120 Rroxscaffold_4G00277310 Rroxscaffold_6G00406330 Rroxscaffold_6G00412930 Rroxscaffold_6G00412940 Rroxscaffold_6G00412950 Rroxscaffold_6G00412970 Rroxscaffold_6G00413290
rosa_rugosa Rorug01G0019000 Rorug02G0095500 Rorug02G0095600 Rorug02G0095700 Rorug02G0095800 Rorug02G0095900 Rorug02G0096000 Rorug02G0096100 Rorug02G0096200 Rorug02G0147500 Rorug02G0147600 Rorug02G0147700 Rorug02G0147800 Rorug02G0148100 Rorug02G0148300 Rorug02G0148400 Rorug02G0148500 Rorug02G0148600 Rorug02G0149800 Rorug02G0162500 Rorug02G0162600 Rorug02G0162700 Rorug02G0162800 Rorug02G0510300 Rorug03G0090600 Rorug03G0093700 Rorug03G0093800 Rorug03G0093900 Rorug03G0094000 Rorug03G0148600 Rorug04G0427700 Rorug05G0083700 Rorug05G0321200 Rorug05G0321300 Rorug05G0321400 Rorug05G0321500 Rorug05G0321600 Rorug05G0321900 Rorug05G0322000 Rorug05G0322000 Rorug05G0322300 Rorug05G0475400 Rorug05G0475500 Rorug05G0475600.1 Rorug05G0475700 Rorug05G0475900
rosa_samantha Rh1DG457400 Rh2AG197800 Rh2AG208800 Rh5AG386200 Rh5BG397600 Rh5DG174500 Rh5DG381100 Rh5DG414700 Rh5DG414800 Rh5DG415500 Rh5DG415800
rosa_wichuraiana Rw0G010830 Rw0G010840 Rw0G010870 Rw0G015860 Rw0G015870 Rw1G037410 Rw1G040530 Rw2G011200 Rw2G011230 Rw2G015590 Rw2G015600 Rw2G015610 Rw2G015630 Rw2G015640 Rw2G015660 Rw2G015680 Rw2G015690 Rw3G013400 Rw3G013410 Rw3G018040 Rw5G036340 Rw5G036390 Rw5G049010 Rw5G049020 Rw5G049030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 57
AccI GTMKAC 1 cut(s) 202
AciI CCGC 3 cut(s) 61, 277, 491
AclI AACGTT 1 cut(s) 192
AclWI GGATC 2 cut(s) 313, 392
AcoI YGGCCR 1 cut(s) 231
AcsI RAATTY 1 cut(s) 459
AcyI GRCGYC 1 cut(s) 54
AfaI GTAC 3 cut(s) 122, 140, 539
AfiI CCNNNNNNNGG 1 cut(s) 158
AgsI TTSAA 4 cut(s) 40, 156, 169, 367
AjnI CCWGG 1 cut(s) 116
AluBI AGCT 1 cut(s) 30
AluI AGCT 1 cut(s) 30
Alw26I GTCTC 1 cut(s) 105
AlwI GGATC 2 cut(s) 313, 392
AoxI GGCC 2 cut(s) 231, 279
ApeKI GCWGC 2 cut(s) 30, 488
ApoI RAATTY 1 cut(s) 459
AspLEI GCGC 1 cut(s) 496
AspS9I GGNCC 1 cut(s) 279
BanII GRGCYC 1 cut(s) 345
BbsI GAAGAC 1 cut(s) 49
BbvI GCAGC 2 cut(s) 17, 500
BccI CCATC 1 cut(s) 136
BciT130I CCWGG 1 cut(s) 118
BcoDI GTCTC 1 cut(s) 105
BfaI CTAG 1 cut(s) 104
BfoI RGCGCY 1 cut(s) 497
BisI GCNGC 3 cut(s) 31, 489, 492
BlpI GCTNAGC 1 cut(s) 26
BlsI GCNGC 3 cut(s) 32, 490, 493
Bme1390I CCNGG 1 cut(s) 118
BmgT120I GGNCC 1 cut(s) 279
BmiI GGNNCC 2 cut(s) 149, 342
BmrFI CCNGG 1 cut(s) 118
BmsI GCATC 1 cut(s) 503
BoxI GACNNNNGTC 1 cut(s) 226
BpiI GAAGAC 1 cut(s) 49
BplI GAGNNNNNCTC 2 cut(s) 275, 307
BpmI CTGGAG 1 cut(s) 100
Bpu1102I GCTNAGC 1 cut(s) 26
BsaHI GRCGYC 1 cut(s) 54
BsaXI ACNNNNNCTCC 2 cut(s) 98, 128
Bsc4I CCNNNNNNNGG 1 cut(s) 158
Bse1I ACTGG 1 cut(s) 163
Bse3DI GCAATG 1 cut(s) 85
BseBI CCWGG 1 cut(s) 118
BseGI GGATG 2 cut(s) 98, 518
BseLI CCNNNNNNNGG 1 cut(s) 158
BseMI GCAATG 1 cut(s) 85
BseNI ACTGG 1 cut(s) 163
BseRI GAGGAG 1 cut(s) 61
BseXI GCAGC 2 cut(s) 17, 500
BshFI GGCC 2 cut(s) 233, 281
BslFI GGGAC 1 cut(s) 311
BslI CCNNNNNNNGG 1 cut(s) 158
BsmAI GTCTC 1 cut(s) 105
BsmFI GGGAC 1 cut(s) 311
BsnI GGCC 2 cut(s) 233, 281
Bsp1286I GDGCHC 1 cut(s) 345
Bsp1407I TGTACA 1 cut(s) 138
Bsp143I GATC 2 cut(s) 318, 384
Bsp1720I GCTNAGC 1 cut(s) 26
BspACI CCGC 3 cut(s) 61, 277, 491
BspANI GGCC 2 cut(s) 233, 281
BspLI GGNNCC 2 cut(s) 149, 342
BspPI GGATC 2 cut(s) 313, 392
BsrDI GCAATG 1 cut(s) 85
BsrGI TGTACA 1 cut(s) 138
BsrI ACTGG 1 cut(s) 163
BssMI GATC 2 cut(s) 318, 384
BssNI GRCGYC 1 cut(s) 54
Bst2UI CCWGG 1 cut(s) 118
Bst4CI ACNGT 1 cut(s) 547
Bst6I CTCTTC 1 cut(s) 441
BstACI GRCGYC 1 cut(s) 54
BstAUI TGTACA 1 cut(s) 138
BstC8I GCNNGC 1 cut(s) 279
BstDEI CTNAG 1 cut(s) 26
BstF5I GGATG 2 cut(s) 98, 518
BstH2I RGCGCY 1 cut(s) 497
BstHHI GCGC 1 cut(s) 496
BstKTI GATC 2 cut(s) 321, 387
BstMAI GTCTC 1 cut(s) 105
BstMBI GATC 2 cut(s) 318, 384
BstNI CCWGG 1 cut(s) 118
BstPAI GACNNNNGTC 1 cut(s) 226
BstSCI CCNGG 1 cut(s) 116
BstV1I GCAGC 2 cut(s) 17, 500
BstV2I GAAGAC 1 cut(s) 49
BsuRI GGCC 2 cut(s) 233, 281
BtsCI GGATG 2 cut(s) 98, 518
BtsIMutI CAGTG 1 cut(s) 234
Cac8I GCNNGC 1 cut(s) 279
CfoI GCGC 1 cut(s) 496
Cfr13I GGNCC 1 cut(s) 279
CseI GACGC 1 cut(s) 188
Csp6I GTAC 3 cut(s) 121, 139, 538
CviJI RGCY 6 cut(s) 25, 30, 233, 281, 343, 552
CviKI_1 RGCY 6 cut(s) 25, 30, 233, 281, 343, 552
CviQI GTAC 3 cut(s) 121, 139, 538
DdeI CTNAG 1 cut(s) 26
DpnI GATC 2 cut(s) 320, 386
DpnII GATC 2 cut(s) 318, 384
EaeI YGGCCR 1 cut(s) 231
Eam1104I CTCTTC 1 cut(s) 441
EarI CTCTTC 1 cut(s) 441
Eco24I GRGCYC 1 cut(s) 345
EcoRII CCWGG 1 cut(s) 116
EcoT38I GRGCYC 1 cut(s) 345
FaiI YATR 4 cut(s) 65, 91, 411, 534
FaqI GGGAC 1 cut(s) 311
FauI CCCGC 1 cut(s) 270
FblI GTMKAC 1 cut(s) 202
Fnu4HI GCNGC 3 cut(s) 31, 489, 492
FokI GGATG 2 cut(s) 85, 525
FriOI GRGCYC 1 cut(s) 345
Fsp4HI GCNGC 3 cut(s) 31, 489, 492
FspBI CTAG 1 cut(s) 104
GlaI GCGC 1 cut(s) 495
GluI GCNGC 3 cut(s) 31, 489, 492
GsuI CTGGAG 1 cut(s) 100
HaeII RGCGCY 1 cut(s) 497
HaeIII GGCC 2 cut(s) 233, 281
HgaI GACGC 1 cut(s) 188
HhaI GCGC 1 cut(s) 496
Hin1I GRCGYC 1 cut(s) 54
Hin6I GCGC 1 cut(s) 494
HinP1I GCGC 1 cut(s) 494
HinfI GANTC 3 cut(s) 113, 162, 182
Hpy166II GTNNAC 1 cut(s) 203
Hpy188I TCNGA 2 cut(s) 334, 455
Hpy188III TCNNGA 3 cut(s) 145, 265, 297
Hpy8I GTNNAC 1 cut(s) 203
Hpy99I CGWCG 2 cut(s) 53, 56
HpyAV CCTTC 4 cut(s) 162, 339, 355, 439
HpyCH4III ACNGT 1 cut(s) 547
HpyCH4IV ACGT 3 cut(s) 54, 192, 205
HpyCH4V TGCA 2 cut(s) 78, 488
HpyF3I CTNAG 1 cut(s) 26
HpySE526I ACGT 3 cut(s) 54, 192, 205
Hsp92I GRCGYC 1 cut(s) 54
HspAI GCGC 1 cut(s) 494
Kzo9I GATC 2 cut(s) 318, 384
LmnI GCTCC 1 cut(s) 340
LpnPI CCDG 8 cut(s) 71, 88, 103, 130, 130, 144, 149, 192
Lsp1109I GCAGC 2 cut(s) 17, 500
LweI GCATC 1 cut(s) 503
MaeI CTAG 1 cut(s) 104
MaeII ACGT 3 cut(s) 54, 192, 205
MaeIII GTNAC 1 cut(s) 16
MalI GATC 2 cut(s) 320, 386
MboI GATC 2 cut(s) 318, 384
MboII GAAGA 5 cut(s) 49, 157, 280, 458, 492
MhlI GDGCHC 1 cut(s) 345
MluCI AATT 2 cut(s) 406, 459
MlyI GAGTC 1 cut(s) 107
MnlI CCTC 5 cut(s) 82, 346, 364, 474, 503
MseI TTAA 3 cut(s) 188, 393, 480
MspA1I CMGCKG 2 cut(s) 277, 491
MspR9I CCNGG 1 cut(s) 118
MvaI CCWGG 1 cut(s) 118
NdeII GATC 2 cut(s) 318, 384
NlaIV GGNNCC 2 cut(s) 149, 342
NmeAIII GCCGAG 1 cut(s) 307
PcsI WCGNNNNNNNCGW 1 cut(s) 429
PfeI GAWTC 2 cut(s) 162, 182
PflFI GACNNNGTC 1 cut(s) 53
PkrI GCNGC 3 cut(s) 32, 490, 493
PleI GAGTC 1 cut(s) 107
PpsI GAGTC 1 cut(s) 107
PshAI GACNNNNGTC 1 cut(s) 226
Psp1406I AACGTT 1 cut(s) 192
Psp6I CCWGG 1 cut(s) 116
PspGI CCWGG 1 cut(s) 116
PspN4I GGNNCC 2 cut(s) 149, 342
PspPI GGNCC 1 cut(s) 279
PsyI GACNNNGTC 1 cut(s) 53
RsaI GTAC 3 cut(s) 122, 140, 539
RsaNI GTAC 3 cut(s) 121, 139, 538
SaqAI TTAA 3 cut(s) 188, 393, 480
SatI GCNGC 3 cut(s) 31, 489, 492
Sau3AI GATC 2 cut(s) 318, 384
Sau96I GGNCC 1 cut(s) 279
SchI GAGTC 1 cut(s) 107
ScrFI CCNGG 1 cut(s) 118
SduI GDGCHC 1 cut(s) 345
SetI ASST 8 cut(s) 32, 57, 122, 138, 181, 195, 208, 253
SfaNI GCATC 1 cut(s) 503
Sse9I AATT 2 cut(s) 406, 459
SsiI CCGC 3 cut(s) 61, 277, 491
SspMI CTAG 1 cut(s) 104
StyD4I CCNGG 1 cut(s) 116
TaaI ACNGT 1 cut(s) 547
TaiI ACGT 3 cut(s) 57, 195, 208
TaqI TCGA 3 cut(s) 264, 296, 432
TasI AATT 2 cut(s) 406, 459
TatI WGTACW 1 cut(s) 138
TauI GCSGC 1 cut(s) 494
TfiI GAWTC 2 cut(s) 162, 182
Tru1I TTAA 3 cut(s) 188, 393, 480
Tru9I TTAA 3 cut(s) 188, 393, 480
TscAI CASTG 1 cut(s) 241
TseI GCWGC 2 cut(s) 30, 488
TspDTI ATGAA 1 cut(s) 368
TspRI CASTG 1 cut(s) 241
Tth111I GACNNNGTC 1 cut(s) 53
XapI RAATTY 1 cut(s) 459
XmiI GTMKAC 1 cut(s) 202
XspI CTAG 1 cut(s) 104
ZraI GACGTC 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.