RchiOBHm_Chr2g0109771

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000082
Physical Location & Seq
Reverse (-)
21101145 .. 21101912
768 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48356

Sequence Viewer

Length: 768 bp
ATGGCGTCGTTTGCGGAGCTTTCTGGCAGAAAGCTGACCTGCCCATTCTGGCAACCAGGGAGTCCTCGCATCTTCATGTTGGGCTCCTACAATGGCATGCTATGTGTAGCTCTTGATTATCTTCGTGATGAATATTATATATGGAACCCATCCACTGCATTCTTCCTCAAATTGCCCAACCCTAATTTTGCCTCAGAATCAAAGCCAGATGTGTGTCCTCACTATGGTGGTTTTGGCTATGTATCAGCGACTGACGACTACAAAGTTGTTGTAGCCACTTTTTCCAAGAGTTCAACAGGCTGGTCAGACATGGCTGTTGGAATCTTTTCGTTTAGAGCAAATTCTTGGAAGAGAGTCAAATCTTGGAAGAGGTTGAGATCCGATCTCGTGAAAAATTTCACTAAGTGGACGGGGGTTCTTTTAAATGAGGCACTACATTGGCTTCAAAGAAGCATTTACCGCCGACAAACTGTGGTTGCATTTGATTTGGGAGAAGAAAAATTTCGGGAAATTCCTTTGCCTCCCCTTGATGGAGATGGTAGCAGTATATGTAGCTCCCTTGATGTTGGGGTTGTTTTCGGAGGGTGCTTGTGTGTCTCAAAGTTTGATGGAACCAGTAGTGAGGAAGTTCAATTATATTTATGGATCATGAAGGAATATGGCGTTCATGAATCTTGGACTATGCTGTTTAAGTTAGCCTCGGTCCATGTCGATGGATTTCATCGACCCGTCATCCATACGGAAAGTGGCATAGTTTTGAGATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

255

Amino Acids

28.86

Weight (kDa)

8.16

Isoelectric Point (pI)

40.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 22 - 226 2.6e-14 F-box associated beta propeller domain
b-prop_At3g26010-like PF24750 22 - 239 6e-08 F-box protein At3g26010-like, beta-propeller
FBA_1 PF07734 24 - 234 1.7e-16 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000082)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17540 FvH4_1g17540 FvH4_1g17540 FvH4_1g17540 FvH4_1g17550 FvH4_1g17560 FvH4_1g17570 FvH4_1g17570 FvH4_1g17570 FvH4_1g17581 FvH4_1g18380 FvH4_1g18391 FvH4_1g18430 FvH4_1g18470 FvH4_1g18480 FvH4_1g18480 FvH4_1g18480 FvH4_1g18870 FvH4_2g36701 FvH4_2g36701 FvH4_2g36710 FvH4_2g36711 FvH4_3g01100 FvH4_3g01100 FvH4_3g14940 FvH4_3g14941 FvH4_3g14950 FvH4_3g14952 FvH4_3g14954 FvH4_3g14954 FvH4_3g14954 FvH4_3g15782 FvH4_3g32340 FvH4_3g32350 FvH4_3g32390 FvH4_3g32390 FvH4_3g44560 FvH4_3g44581 FvH4_3g44650 FvH4_3g44660 FvH4_3g44671 FvH4_3g45110 FvH4_3g45120 FvH4_3g45161 FvH4_4g30361 FvH4_6g14790 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14972 FvH4_6g14980 FvH4_6g14980 FvH4_6g14981 FvH4_6g14990 FvH4_6g14991 FvH4_6g14991 FvH4_6g14993 FvH4_6g14993 FvH4_6g14994 FvH4_6g15010 FvH4_6g19961
malus_domestica MD09G1138900.v1.1
prunus_persica Prupe.6G214500_v2.0.a1 Prupe.6G214600_v2.0.a1 Prupe.6G214700_v2.0.a1 Prupe.6G214900_v2.0.a1 Prupe.6G215100_v2.0.a1 Prupe.7G008100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321661 RchiOBHm_Chr1g0378141 RchiOBHm_Chr2g0101031 RchiOBHm_Chr2g0107781 RchiOBHm_Chr2g0107801 RchiOBHm_Chr2g0107811 RchiOBHm_Chr2g0107821 RchiOBHm_Chr2g0107841 RchiOBHm_Chr2g0107851 RchiOBHm_Chr2g0107881 RchiOBHm_Chr2g0107891 RchiOBHm_Chr2g0109731 RchiOBHm_Chr2g0109761 RchiOBHm_Chr2g0109771 RchiOBHm_Chr2g0109781 RchiOBHm_Chr3g0468171 RchiOBHm_Chr3g0468191 RchiOBHm_Chr3g0475411 RchiOBHm_Chr5g0007501 RchiOBHm_Chr5g0024531 RchiOBHm_Chr5g0053901 RchiOBHm_Chr5g0059111 RchiOBHm_Chr5g0059201 RchiOBHm_Chr5g0059211 RchiOBHm_Chr5g0059291 RchiOBHm_Chr5g0059301 RchiOBHm_Chr5g0059321 RchiOBHm_Chr5g0059551 RchiOBHm_Chr5g0081341 RchiOBHm_Chr7g0211081
rosa_laevigata RLG00000003023 RLG00000017039 RLG00000017135 RLG00000017616 RLG00000017620 RLG00000017621 RLG00000017622 RLG00000017623 RLG00000017624 RLG00000017625 RLG00000017762 RLG00000017763 RLG00000017764 RLG00000017765 RLG00000024443 RLG00000026103 RLG00000031462 RLG00000035283 RLG00000036923 RLG00000036924 RLG00000036925
rosa_multiflora Rmu_co7981142.1_g000001 Rmu_co8037462.1_g000001 Rmu_co8043938.1_g000001 Rmu_co8085092.1_g000001 Rmu_co8243479.1_g000002 Rmu_co8254857.1_g000001 Rmu_co8270991.1_g000001 Rmu_co8304467.1_g000001 Rmu_co8322247.1_g000001 Rmu_sc0000186.1_g000008 Rmu_sc0000375.1_g000022 Rmu_sc0000625.1_g000006 Rmu_sc0001465.1_g000001 Rmu_sc0001484.1_g000034 Rmu_sc0001484.1_g000035 Rmu_sc0001484.1_g000036 Rmu_sc0001484.1_g000038 Rmu_sc0001484.1_g000041 Rmu_sc0001484.1_g000042 Rmu_sc0001793.1_g000054 Rmu_sc0001810.1_g000002 Rmu_sc0001810.1_g000003 Rmu_sc0001810.1_g000004 Rmu_sc0001862.1_g000003 Rmu_sc0002076.1_g000008 Rmu_sc0002076.1_g000009 Rmu_sc0002983.1_g000017 Rmu_sc0002983.1_g000035 Rmu_sc0002983.1_g000038 Rmu_sc0003121.1_g000002 Rmu_sc0003121.1_g000005 Rmu_sc0003121.1_g000006 Rmu_sc0003121.1_g000007 Rmu_sc0003659.1_g000007 Rmu_sc0004524.1_g000009 Rmu_sc0004524.1_g000010 Rmu_sc0004524.1_g000012 Rmu_sc0004650.1_g000003 Rmu_sc0006215.1_g000003 Rmu_sc0006889.1_g000020 Rmu_sc0006889.1_g000030 Rmu_sc0006959.1_g000021 Rmu_sc0007173.1_g000008 Rmu_sc0007698.1_g000019 Rmu_sc0007768.1_g000009 Rmu_sc0008992.1_g000002 Rmu_sc0008992.1_g000004 Rmu_sc0009575.1_g000001 Rmu_sc0009575.1_g000008 Rmu_sc0009650.1_g000002 Rmu_sc0009650.1_g000005 Rmu_sc0009650.1_g000009 Rmu_sc0012421.1_g000005 Rmu_sc0012471.1_g000023 Rmu_sc0012471.1_g000025 Rmu_sc0012670.1_g000002 Rmu_sc0012670.1_g000003 Rmu_sc0016637.1_g000005 Rmu_sc0018174.1_g000002 Rmu_sc0031424.1_g000001 Rmu_ssc0000182.1_g000007 Rmu_ssc0000182.1_g000010 Rmu_ssc0000432.1_g000029 Rmu_ssc0000432.1_g000035 Rmu_ssc0000432.1_g000036 Rmu_ssc0000432.1_g000042
rosa_roxburghii Rroxscaffold_153G00436690 Rroxscaffold_1G00002200 Rroxscaffold_1G00002220 Rroxscaffold_1G00021160 Rroxscaffold_1G00021240 Rroxscaffold_1G00021310 Rroxscaffold_1G00025950 Rroxscaffold_1G00026710 Rroxscaffold_1G00054720 Rroxscaffold_2G00104770 Rroxscaffold_2G00104780 Rroxscaffold_2G00133820 Rroxscaffold_2G00133950 Rroxscaffold_2G00133970 Rroxscaffold_2G00133980 Rroxscaffold_2G00133990 Rroxscaffold_2G00135690 Rroxscaffold_2G00135820 Rroxscaffold_2G00135850 Rroxscaffold_2G00135860 Rroxscaffold_2G00135890 Rroxscaffold_2G00135910 Rroxscaffold_2G00135920 Rroxscaffold_2G00135930 Rroxscaffold_2G00135940 Rroxscaffold_2G00141620 Rroxscaffold_3G00248120 Rroxscaffold_4G00277310 Rroxscaffold_6G00406330 Rroxscaffold_6G00412930 Rroxscaffold_6G00412940 Rroxscaffold_6G00412950 Rroxscaffold_6G00412970 Rroxscaffold_6G00413290
rosa_rugosa Rorug01G0019000 Rorug02G0095500 Rorug02G0095600 Rorug02G0095700 Rorug02G0095800 Rorug02G0095900 Rorug02G0096000 Rorug02G0096100 Rorug02G0096200 Rorug02G0147500 Rorug02G0147600 Rorug02G0147700 Rorug02G0147800 Rorug02G0148100 Rorug02G0148300 Rorug02G0148400 Rorug02G0148500 Rorug02G0148600 Rorug02G0149800 Rorug02G0162500 Rorug02G0162600 Rorug02G0162700 Rorug02G0162800 Rorug02G0510300 Rorug03G0090600 Rorug03G0093700 Rorug03G0093800 Rorug03G0093900 Rorug03G0094000 Rorug03G0148600 Rorug04G0427700 Rorug05G0083700 Rorug05G0321200 Rorug05G0321300 Rorug05G0321400 Rorug05G0321500 Rorug05G0321600 Rorug05G0321900 Rorug05G0322000 Rorug05G0322000 Rorug05G0322300 Rorug05G0475400 Rorug05G0475500 Rorug05G0475600.1 Rorug05G0475700 Rorug05G0475900
rosa_samantha Rh1DG457400 Rh2AG197800 Rh2AG208800 Rh5AG386200 Rh5BG397600 Rh5DG174500 Rh5DG381100 Rh5DG414700 Rh5DG414800 Rh5DG415500 Rh5DG415800
rosa_wichuraiana Rw0G010830 Rw0G010840 Rw0G010870 Rw0G015860 Rw0G015870 Rw1G037410 Rw1G040530 Rw2G011200 Rw2G011230 Rw2G015590 Rw2G015600 Rw2G015610 Rw2G015630 Rw2G015640 Rw2G015660 Rw2G015680 Rw2G015690 Rw3G013400 Rw3G013410 Rw3G018040 Rw5G036340 Rw5G036390 Rw5G049010 Rw5G049020 Rw5G049030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 47
AciI CCGC 2 cut(s) 14, 460
AclWI GGATC 2 cut(s) 372, 653
AcsI RAATTY 4 cut(s) 340, 394, 500, 510
AcyI GRCGYC 1 cut(s) 5
AdeI CACNNNGTG 1 cut(s) 405
AfiI CCNNNNNNNGG 2 cut(s) 224, 530
AgsI TTSAA 3 cut(s) 294, 446, 632
AjnI CCWGG 1 cut(s) 55
AleI CACNNNNGTG 1 cut(s) 225
AluBI AGCT 4 cut(s) 19, 34, 110, 555
AluI AGCT 4 cut(s) 19, 34, 110, 555
Alw26I GTCTC 1 cut(s) 601
AlwI GGATC 2 cut(s) 372, 653
AlwNI CAGNNNCTG 1 cut(s) 251
ApoI RAATTY 4 cut(s) 340, 394, 500, 510
Asp700I GAANNNNTTC 3 cut(s) 325, 395, 501
AspS9I GGNCC 1 cut(s) 703
AvaII GGWCC 1 cut(s) 703
BanII GRGCYC 1 cut(s) 86
BauI CACGAG 1 cut(s) 386
BccI CCATC 5 cut(s) 157, 524, 530, 602, 707
BciT130I CCWGG 1 cut(s) 57
BcoDI GTCTC 1 cut(s) 601
BfuAI ACCTGC 1 cut(s) 47
Bme1390I CCNGG 1 cut(s) 57
Bme18I GGWCC 1 cut(s) 703
BmgT120I GGNCC 1 cut(s) 703
BmiI GGNNCC 3 cut(s) 85, 146, 613
BmrFI CCNGG 1 cut(s) 57
BmsI GCATC 1 cut(s) 78
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 2 cut(s) 56, 699
Bsc4I CCNNNNNNNGG 2 cut(s) 224, 530
Bse1I ACTGG 1 cut(s) 615
BseBI CCWGG 1 cut(s) 57
BseDI CCNNGG 2 cut(s) 56, 699
BseGI GGATG 2 cut(s) 149, 732
BseLI CCNNNNNNNGG 2 cut(s) 224, 530
BseMII CTCAG 1 cut(s) 207
BseNI ACTGG 1 cut(s) 615
BslI CCNNNNNNNGG 2 cut(s) 224, 530
BsmAI GTCTC 1 cut(s) 601
BsmI GAATGC 1 cut(s) 158
Bsp1286I GDGCHC 1 cut(s) 86
Bsp143I GATC 4 cut(s) 377, 382, 645, 761
BspACI CCGC 2 cut(s) 14, 460
BspCNI CTCAG 1 cut(s) 206
BspHI TCATGA 2 cut(s) 648, 667
BspLI GGNNCC 3 cut(s) 85, 146, 613
BspMI ACCTGC 1 cut(s) 47
BspPI GGATC 2 cut(s) 372, 653
BsrI ACTGG 1 cut(s) 615
BssECI CCNNGG 2 cut(s) 56, 699
BssMI GATC 4 cut(s) 377, 382, 645, 761
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 386
Bst2BI CACGAG 1 cut(s) 386
Bst2UI CCWGG 1 cut(s) 57
Bst4CI ACNGT 1 cut(s) 472
Bst6I CTCTTC 2 cut(s) 344, 362
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 1 cut(s) 98
BstDEI CTNAG 2 cut(s) 193, 402
BstF5I GGATG 2 cut(s) 149, 732
BstKTI GATC 4 cut(s) 380, 385, 648, 764
BstMAI GTCTC 1 cut(s) 601
BstMBI GATC 4 cut(s) 377, 382, 645, 761
BstMWI GCNNNNNNNGC 2 cut(s) 11, 459
BstNI CCWGG 1 cut(s) 57
BstNSI RCATGY 1 cut(s) 100
BstSCI CCNGG 1 cut(s) 55
BstX2I RGATCY 1 cut(s) 377
BstXI CCANNNNNNTGG 1 cut(s) 713
BstYI RGATCY 1 cut(s) 377
BtsCI GGATG 2 cut(s) 149, 732
BtsI GCAGTG 1 cut(s) 153
BtsIMutI CAGTG 1 cut(s) 153
BveI ACCTGC 1 cut(s) 47
Cac8I GCNNGC 1 cut(s) 98
CaiI CAGNNNCTG 1 cut(s) 251
CciI TCATGA 2 cut(s) 648, 667
Cfr13I GGNCC 1 cut(s) 703
CviAII CATG 6 cut(s) 76, 97, 310, 649, 668, 707
DdeI CTNAG 2 cut(s) 193, 402
DpnI GATC 4 cut(s) 379, 384, 647, 763
DpnII GATC 4 cut(s) 377, 382, 645, 761
DraI TTTAAA 1 cut(s) 423
DraIII CACNNNGTG 1 cut(s) 405
Eam1104I CTCTTC 2 cut(s) 344, 362
EarI CTCTTC 2 cut(s) 344, 362
Eco24I GRGCYC 1 cut(s) 86
Eco47I GGWCC 1 cut(s) 703
EcoRII CCWGG 1 cut(s) 55
EcoT38I GRGCYC 1 cut(s) 86
FaeI CATG 6 cut(s) 79, 100, 313, 652, 671, 710
FatI CATG 6 cut(s) 75, 96, 309, 648, 667, 706
FokI GGATG 2 cut(s) 136, 719
FriOI GRGCYC 1 cut(s) 86
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 6 cut(s) 79, 100, 313, 652, 671, 710
HinfI GANTC 5 cut(s) 61, 197, 321, 354, 671
Hpy166II GTNNAC 1 cut(s) 408
Hpy188I TCNGA 4 cut(s) 196, 307, 382, 581
Hpy188III TCNNGA 6 cut(s) 113, 125, 388, 506, 649, 668
Hpy8I GTNNAC 1 cut(s) 408
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 1 cut(s) 646
HpyCH4III ACNGT 1 cut(s) 472
HpyCH4V TGCA 2 cut(s) 158, 479
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 459
HpyF3I CTNAG 2 cut(s) 193, 402
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 6 cut(s) 79, 100, 313, 652, 671, 710
Kzo9I GATC 4 cut(s) 377, 382, 645, 761
LmnI GCTCC 3 cut(s) 16, 89, 560
LpnPI CCDG 9 cut(s) 9, 34, 42, 52, 69, 219, 282, 286, 628
LweI GCATC 1 cut(s) 78
MalI GATC 4 cut(s) 379, 384, 647, 763
MboI GATC 4 cut(s) 377, 382, 645, 761
MboII GAAGA 6 cut(s) 64, 113, 154, 361, 379, 506
MflI RGATCY 1 cut(s) 377
MhlI GDGCHC 1 cut(s) 86
MluCI AATT 7 cut(s) 170, 184, 340, 394, 500, 510, 632
MlyI GAGTC 2 cut(s) 70, 363
MmeI TCCRAC 1 cut(s) 298
MroXI GAANNNNTTC 3 cut(s) 325, 395, 501
MseI TTAA 2 cut(s) 422, 690
MslI CAYNNNNRTG 3 cut(s) 74, 225, 711
MspR9I CCNGG 1 cut(s) 57
Mva1269I GAATGC 1 cut(s) 158
MvaI CCWGG 1 cut(s) 57
MwoI GCNNNNNNNGC 2 cut(s) 11, 459
NdeII GATC 4 cut(s) 377, 382, 645, 761
NlaIII CATG 6 cut(s) 79, 100, 313, 652, 671, 710
NlaIV GGNNCC 3 cut(s) 85, 146, 613
NspI RCATGY 1 cut(s) 100
OliI CACNNNNGTG 1 cut(s) 225
PaeI GCATGC 1 cut(s) 100
PagI TCATGA 2 cut(s) 648, 667
PctI GAATGC 1 cut(s) 158
PdmI GAANNNNTTC 3 cut(s) 325, 395, 501
PfeI GAWTC 3 cut(s) 197, 321, 671
PleI GAGTC 2 cut(s) 69, 362
PpsI GAGTC 2 cut(s) 69, 362
Psp6I CCWGG 1 cut(s) 55
PspGI CCWGG 1 cut(s) 55
PspN4I GGNNCC 3 cut(s) 85, 146, 613
PspPI GGNCC 1 cut(s) 703
PstNI CAGNNNCTG 1 cut(s) 251
PsuI RGATCY 1 cut(s) 377
RseI CAYNNNNRTG 3 cut(s) 74, 225, 711
SaqAI TTAA 2 cut(s) 422, 690
Sau3AI GATC 4 cut(s) 377, 382, 645, 761
Sau96I GGNCC 1 cut(s) 703
SchI GAGTC 2 cut(s) 70, 363
ScrFI CCNGG 1 cut(s) 57
SduI GDGCHC 1 cut(s) 86
SetI ASST 6 cut(s) 21, 36, 41, 112, 374, 557
SfaNI GCATC 1 cut(s) 78
SinI GGWCC 1 cut(s) 703
SmiMI CAYNNNNRTG 3 cut(s) 74, 225, 711
SphI GCATGC 1 cut(s) 100
Sse9I AATT 7 cut(s) 170, 184, 340, 394, 500, 510, 632
SsiI CCGC 2 cut(s) 14, 460
SspI AATATT 1 cut(s) 134
StyD4I CCNGG 1 cut(s) 55
TaaI ACNGT 1 cut(s) 472
TaqI TCGA 2 cut(s) 711, 724
TaqII GACCGA 1 cut(s) 691
TasI AATT 7 cut(s) 170, 184, 340, 394, 500, 510, 632
TfiI GAWTC 3 cut(s) 197, 321, 671
Tru1I TTAA 2 cut(s) 422, 690
Tru9I TTAA 2 cut(s) 422, 690
TscAI CASTG 1 cut(s) 160
TspDTI ATGAA 6 cut(s) 64, 144, 656, 665, 684, 710
TspGWI ACGGA 1 cut(s) 755
TspRI CASTG 1 cut(s) 160
VpaK11BI GGWCC 1 cut(s) 703
XapI RAATTY 4 cut(s) 340, 394, 500, 510
XceI RCATGY 1 cut(s) 100
XcmI CCANNNNNNNNNTGG 1 cut(s) 743
XmnI GAANNNNTTC 3 cut(s) 325, 395, 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.