Rmu_sc0012670.1_g000003

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012670.1
OG0000082
Physical Location & Seq
Reverse (-)
10648 .. 11247
600 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012670.1_g000003.1.cds

Sequence Viewer

Length: 600 bp
atgagagctaatatttggaaaaggattgaatcccctatcgagtctgtaatccagggagagggggttcttttaaatgaggcacttcattggcttgatgatttgaatgtaccagaaccagttatctttgcatttgatttggtaaaggaggagttccggaaaatacagctgcctaattttgatggagatggcaaggatttccgccgtttggaggttgtttgtggaggacgccttttagtatctcgttgtacatcgtgtgctcgtgacacttaccattatatcgatttttgggtcatggaagagtatggtgtttgccaatcctggactatgctgtttgactacgaggtttcccagaagcctgggtattggtccctcataccaatcctggttatggagactataacacttactgtgcagatgacctgcagggctgacattttggtcaagcatgatcataaagaagggaagctttcctttcactttcttgatagatataagtggcacatgattaaatatgaggagagtttactttggctcagtgattattatgcagtggaagagaaggtcaaaagactcaaaaccgaacaagtcctgacaagctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

199

Amino Acids

23.59

Weight (kDa)

5.42

Isoelectric Point (pI)

49.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000082)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17540 FvH4_1g17540 FvH4_1g17540 FvH4_1g17540 FvH4_1g17550 FvH4_1g17560 FvH4_1g17570 FvH4_1g17570 FvH4_1g17570 FvH4_1g17581 FvH4_1g18380 FvH4_1g18391 FvH4_1g18430 FvH4_1g18470 FvH4_1g18480 FvH4_1g18480 FvH4_1g18480 FvH4_1g18870 FvH4_2g36701 FvH4_2g36701 FvH4_2g36710 FvH4_2g36711 FvH4_3g01100 FvH4_3g01100 FvH4_3g14940 FvH4_3g14941 FvH4_3g14950 FvH4_3g14952 FvH4_3g14954 FvH4_3g14954 FvH4_3g14954 FvH4_3g15782 FvH4_3g32340 FvH4_3g32350 FvH4_3g32390 FvH4_3g32390 FvH4_3g44560 FvH4_3g44581 FvH4_3g44650 FvH4_3g44660 FvH4_3g44671 FvH4_3g45110 FvH4_3g45120 FvH4_3g45161 FvH4_4g30361 FvH4_6g14790 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14972 FvH4_6g14980 FvH4_6g14980 FvH4_6g14981 FvH4_6g14990 FvH4_6g14991 FvH4_6g14991 FvH4_6g14993 FvH4_6g14993 FvH4_6g14994 FvH4_6g15010 FvH4_6g19961
malus_domestica MD09G1138900.v1.1
prunus_persica Prupe.6G214500_v2.0.a1 Prupe.6G214600_v2.0.a1 Prupe.6G214700_v2.0.a1 Prupe.6G214900_v2.0.a1 Prupe.6G215100_v2.0.a1 Prupe.7G008100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321661 RchiOBHm_Chr1g0378141 RchiOBHm_Chr2g0101031 RchiOBHm_Chr2g0107781 RchiOBHm_Chr2g0107801 RchiOBHm_Chr2g0107811 RchiOBHm_Chr2g0107821 RchiOBHm_Chr2g0107841 RchiOBHm_Chr2g0107851 RchiOBHm_Chr2g0107881 RchiOBHm_Chr2g0107891 RchiOBHm_Chr2g0109731 RchiOBHm_Chr2g0109761 RchiOBHm_Chr2g0109771 RchiOBHm_Chr2g0109781 RchiOBHm_Chr3g0468171 RchiOBHm_Chr3g0468191 RchiOBHm_Chr3g0475411 RchiOBHm_Chr5g0007501 RchiOBHm_Chr5g0024531 RchiOBHm_Chr5g0053901 RchiOBHm_Chr5g0059111 RchiOBHm_Chr5g0059201 RchiOBHm_Chr5g0059211 RchiOBHm_Chr5g0059291 RchiOBHm_Chr5g0059301 RchiOBHm_Chr5g0059321 RchiOBHm_Chr5g0059551 RchiOBHm_Chr5g0081341 RchiOBHm_Chr7g0211081
rosa_laevigata RLG00000003023 RLG00000017039 RLG00000017135 RLG00000017616 RLG00000017620 RLG00000017621 RLG00000017622 RLG00000017623 RLG00000017624 RLG00000017625 RLG00000017762 RLG00000017763 RLG00000017764 RLG00000017765 RLG00000024443 RLG00000026103 RLG00000031462 RLG00000035283 RLG00000036923 RLG00000036924 RLG00000036925
rosa_multiflora Rmu_co7981142.1_g000001 Rmu_co8037462.1_g000001 Rmu_co8043938.1_g000001 Rmu_co8085092.1_g000001 Rmu_co8243479.1_g000002 Rmu_co8254857.1_g000001 Rmu_co8270991.1_g000001 Rmu_co8304467.1_g000001 Rmu_co8322247.1_g000001 Rmu_sc0000186.1_g000008 Rmu_sc0000375.1_g000022 Rmu_sc0000625.1_g000006 Rmu_sc0001465.1_g000001 Rmu_sc0001484.1_g000034 Rmu_sc0001484.1_g000035 Rmu_sc0001484.1_g000036 Rmu_sc0001484.1_g000038 Rmu_sc0001484.1_g000041 Rmu_sc0001484.1_g000042 Rmu_sc0001793.1_g000054 Rmu_sc0001810.1_g000002 Rmu_sc0001810.1_g000003 Rmu_sc0001810.1_g000004 Rmu_sc0001862.1_g000003 Rmu_sc0002076.1_g000008 Rmu_sc0002076.1_g000009 Rmu_sc0002983.1_g000017 Rmu_sc0002983.1_g000035 Rmu_sc0002983.1_g000038 Rmu_sc0003121.1_g000002 Rmu_sc0003121.1_g000005 Rmu_sc0003121.1_g000006 Rmu_sc0003121.1_g000007 Rmu_sc0003659.1_g000007 Rmu_sc0004524.1_g000009 Rmu_sc0004524.1_g000010 Rmu_sc0004524.1_g000012 Rmu_sc0004650.1_g000003 Rmu_sc0006215.1_g000003 Rmu_sc0006889.1_g000020 Rmu_sc0006889.1_g000030 Rmu_sc0006959.1_g000021 Rmu_sc0007173.1_g000008 Rmu_sc0007698.1_g000019 Rmu_sc0007768.1_g000009 Rmu_sc0008992.1_g000002 Rmu_sc0008992.1_g000004 Rmu_sc0009575.1_g000001 Rmu_sc0009575.1_g000008 Rmu_sc0009650.1_g000002 Rmu_sc0009650.1_g000005 Rmu_sc0009650.1_g000009 Rmu_sc0012421.1_g000005 Rmu_sc0012471.1_g000023 Rmu_sc0012471.1_g000025 Rmu_sc0012670.1_g000002 Rmu_sc0012670.1_g000003 Rmu_sc0016637.1_g000005 Rmu_sc0018174.1_g000002 Rmu_sc0031424.1_g000001 Rmu_ssc0000182.1_g000007 Rmu_ssc0000182.1_g000010 Rmu_ssc0000432.1_g000029 Rmu_ssc0000432.1_g000035 Rmu_ssc0000432.1_g000036 Rmu_ssc0000432.1_g000042
rosa_roxburghii Rroxscaffold_153G00436690 Rroxscaffold_1G00002200 Rroxscaffold_1G00002220 Rroxscaffold_1G00021160 Rroxscaffold_1G00021240 Rroxscaffold_1G00021310 Rroxscaffold_1G00025950 Rroxscaffold_1G00026710 Rroxscaffold_1G00054720 Rroxscaffold_2G00104770 Rroxscaffold_2G00104780 Rroxscaffold_2G00133820 Rroxscaffold_2G00133950 Rroxscaffold_2G00133970 Rroxscaffold_2G00133980 Rroxscaffold_2G00133990 Rroxscaffold_2G00135690 Rroxscaffold_2G00135820 Rroxscaffold_2G00135850 Rroxscaffold_2G00135860 Rroxscaffold_2G00135890 Rroxscaffold_2G00135910 Rroxscaffold_2G00135920 Rroxscaffold_2G00135930 Rroxscaffold_2G00135940 Rroxscaffold_2G00141620 Rroxscaffold_3G00248120 Rroxscaffold_4G00277310 Rroxscaffold_6G00406330 Rroxscaffold_6G00412930 Rroxscaffold_6G00412940 Rroxscaffold_6G00412950 Rroxscaffold_6G00412970 Rroxscaffold_6G00413290
rosa_rugosa Rorug01G0019000 Rorug02G0095500 Rorug02G0095600 Rorug02G0095700 Rorug02G0095800 Rorug02G0095900 Rorug02G0096000 Rorug02G0096100 Rorug02G0096200 Rorug02G0147500 Rorug02G0147600 Rorug02G0147700 Rorug02G0147800 Rorug02G0148100 Rorug02G0148300 Rorug02G0148400 Rorug02G0148500 Rorug02G0148600 Rorug02G0149800 Rorug02G0162500 Rorug02G0162600 Rorug02G0162700 Rorug02G0162800 Rorug02G0510300 Rorug03G0090600 Rorug03G0093700 Rorug03G0093800 Rorug03G0093900 Rorug03G0094000 Rorug03G0148600 Rorug04G0427700 Rorug05G0083700 Rorug05G0321200 Rorug05G0321300 Rorug05G0321400 Rorug05G0321500 Rorug05G0321600 Rorug05G0321900 Rorug05G0322000 Rorug05G0322000 Rorug05G0322300 Rorug05G0475400 Rorug05G0475500 Rorug05G0475600.1 Rorug05G0475700 Rorug05G0475900
rosa_samantha Rh1DG457400 Rh2AG197800 Rh2AG208800 Rh5AG386200 Rh5BG397600 Rh5DG174500 Rh5DG381100 Rh5DG414700 Rh5DG414800 Rh5DG415500 Rh5DG415800
rosa_wichuraiana Rw0G010830 Rw0G010840 Rw0G010870 Rw0G015860 Rw0G015870 Rw1G037410 Rw1G040530 Rw2G011200 Rw2G011230 Rw2G015590 Rw2G015600 Rw2G015610 Rw2G015630 Rw2G015640 Rw2G015660 Rw2G015680 Rw2G015690 Rw3G013400 Rw3G013410 Rw3G018040 Rw5G036340 Rw5G036390 Rw5G049010 Rw5G049020 Rw5G049030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 437
Acc36I ACCTGC 1 cut(s) 428
AccIII TCCGGA 1 cut(s) 153
AciI CCGC 1 cut(s) 199
AcyI GRCGYC 1 cut(s) 226
AfaI GTAC 2 cut(s) 108, 247
AfiI CCNNNNNNNGG 4 cut(s) 58, 205, 208, 388
AgsI TTSAA 2 cut(s) 29, 103
AjnI CCWGG 4 cut(s) 51, 317, 355, 381
AloI GAACNNNNNNTCC 2 cut(s) 48, 80
AluBI AGCT 4 cut(s) 8, 166, 466, 597
AluI AGCT 4 cut(s) 8, 166, 466, 597
Alw21I GWGCWC 1 cut(s) 259
Alw26I GTCTC 1 cut(s) 386
Aor13HI TCCGGA 1 cut(s) 153
ApeKI GCWGC 1 cut(s) 166
AspS9I GGNCC 1 cut(s) 366
AvaII GGWCC 1 cut(s) 366
BauI CACGAG 1 cut(s) 258
Bbv12I GWGCWC 1 cut(s) 259
BbvI GCAGC 1 cut(s) 153
BccI CCATC 2 cut(s) 173, 179
BceAI ACGGC 1 cut(s) 186
BciT130I CCWGG 4 cut(s) 53, 319, 357, 383
BclI TGATCA 1 cut(s) 448
BcoDI GTCTC 1 cut(s) 386
BfmI CTRYAG 1 cut(s) 421
BfuAI ACCTGC 1 cut(s) 428
BisI GCNGC 1 cut(s) 167
BlsI GCNGC 1 cut(s) 168
Bme1390I CCNGG 4 cut(s) 53, 319, 357, 383
Bme18I GGWCC 1 cut(s) 366
BmgT120I GGNCC 1 cut(s) 366
BmiI GGNNCC 1 cut(s) 368
BmrFI CCNGG 4 cut(s) 53, 319, 357, 383
Bsa29I ATCGAT 1 cut(s) 279
BsaHI GRCGYC 1 cut(s) 226
BsaJI CCNNGG 2 cut(s) 52, 356
BsaWI WCCGGW 1 cut(s) 153
BsaXI ACNNNNNCTCC 2 cut(s) 48, 78
Bsc4I CCNNNNNNNGG 4 cut(s) 58, 205, 208, 388
Bse1I ACTGG 1 cut(s) 116
BseAI TCCGGA 1 cut(s) 153
BseBI CCWGG 4 cut(s) 53, 319, 357, 383
BseCI ATCGAT 1 cut(s) 279
BseDI CCNNGG 2 cut(s) 52, 356
BseLI CCNNNNNNNGG 4 cut(s) 58, 205, 208, 388
BseMII CTCAG 1 cut(s) 547
BseNI ACTGG 1 cut(s) 116
BseRI GAGGAG 2 cut(s) 161, 530
BseXI GCAGC 1 cut(s) 153
BsgI GTGCAG 1 cut(s) 431
BshVI ATCGAT 1 cut(s) 279
BsiHKAI GWGCWC 1 cut(s) 259
BsiSI CCGG 1 cut(s) 154
BslFI GGGAC 1 cut(s) 352
BslI CCNNNNNNNGG 4 cut(s) 58, 205, 208, 388
BsmAI GTCTC 1 cut(s) 386
BsmFI GGGAC 1 cut(s) 352
Bsp1286I GDGCHC 1 cut(s) 259
Bsp13I TCCGGA 1 cut(s) 153
Bsp1407I TGTACA 1 cut(s) 245
Bsp143I GATC 1 cut(s) 448
BspACI CCGC 1 cut(s) 199
BspCNI CTCAG 1 cut(s) 546
BspDI ATCGAT 1 cut(s) 279
BspEI TCCGGA 1 cut(s) 153
BspLI GGNNCC 1 cut(s) 368
BspMAI CTGCAG 1 cut(s) 425
BspMI ACCTGC 1 cut(s) 428
BsrGI TGTACA 1 cut(s) 245
BsrI ACTGG 1 cut(s) 116
BssECI CCNNGG 2 cut(s) 52, 356
BssMI GATC 1 cut(s) 448
BssNI GRCGYC 1 cut(s) 226
BssSI CACGAG 1 cut(s) 258
Bst2BI CACGAG 1 cut(s) 258
Bst2UI CCWGG 4 cut(s) 53, 319, 357, 383
Bst4CI ACNGT 1 cut(s) 409
Bst6I CTCTTC 2 cut(s) 291, 549
BstACI GRCGYC 1 cut(s) 226
BstAUI TGTACA 1 cut(s) 245
BstDEI CTNAG 1 cut(s) 533
BstKTI GATC 1 cut(s) 451
BstMAI GTCTC 1 cut(s) 386
BstMBI GATC 1 cut(s) 448
BstNI CCWGG 4 cut(s) 53, 319, 357, 383
BstSCI CCNGG 4 cut(s) 51, 317, 355, 381
BstSFI CTRYAG 1 cut(s) 421
BstV1I GCAGC 1 cut(s) 153
BstXI CCANNNNNNTGG 1 cut(s) 356
Bsu15I ATCGAT 1 cut(s) 279
BsuTUI ATCGAT 1 cut(s) 279
BtsI GCAGTG 1 cut(s) 555
BtsIMutI CAGTG 2 cut(s) 541, 555
BveI ACCTGC 1 cut(s) 428
Cfr13I GGNCC 1 cut(s) 366
ClaI ATCGAT 1 cut(s) 279
CseI GACGC 1 cut(s) 234
Csp6I GTAC 2 cut(s) 107, 246
CviAII CATG 3 cut(s) 292, 446, 502
CviJI RGCY 8 cut(s) 8, 91, 166, 355, 428, 466, 532, 597
CviKI_1 RGCY 8 cut(s) 8, 91, 166, 355, 428, 466, 532, 597
CviQI GTAC 2 cut(s) 107, 246
DdeI CTNAG 1 cut(s) 533
DpnI GATC 1 cut(s) 450
DpnII GATC 1 cut(s) 448
DraI TTTAAA 1 cut(s) 72
DrdI GACNNNNNNGTC 1 cut(s) 437
DseDI GACNNNNNNGTC 1 cut(s) 437
Eam1104I CTCTTC 2 cut(s) 291, 549
EarI CTCTTC 2 cut(s) 291, 549
EciI GGCGGA 1 cut(s) 188
Eco47I GGWCC 1 cut(s) 366
EcoRII CCWGG 4 cut(s) 51, 317, 355, 381
FaeI CATG 3 cut(s) 295, 449, 505
FalI AAGNNNNNCTT 4 cut(s) 450, 482, 455, 487
FaqI GGGAC 1 cut(s) 352
FatI CATG 3 cut(s) 291, 445, 501
FbaI TGATCA 1 cut(s) 448
Fnu4HI GCNGC 1 cut(s) 167
Fsp4HI GCNGC 1 cut(s) 167
GluI GCNGC 1 cut(s) 167
HapII CCGG 1 cut(s) 154
HgaI GACGC 1 cut(s) 234
Hin1I GRCGYC 1 cut(s) 226
Hin1II CATG 3 cut(s) 295, 449, 505
HindIII AAGCTT 1 cut(s) 464
HinfI GANTC 3 cut(s) 29, 41, 570
HpaII CCGG 1 cut(s) 154
Hpy166II GTNNAC 1 cut(s) 524
Hpy188III TCNNGA 4 cut(s) 154, 260, 482, 589
Hpy8I GTNNAC 1 cut(s) 524
HpyAV CCTTC 2 cut(s) 452, 553
HpyCH4III ACNGT 1 cut(s) 409
HpyCH4V TGCA 4 cut(s) 128, 412, 423, 548
HpyF3I CTNAG 1 cut(s) 533
Hsp92I GRCGYC 1 cut(s) 226
Hsp92II CATG 3 cut(s) 295, 449, 505
Kpn2I TCCGGA 1 cut(s) 153
Ksp22I TGATCA 1 cut(s) 448
Kzo9I GATC 1 cut(s) 448
Lsp1109I GCAGC 1 cut(s) 153
MaeIII GTNAC 1 cut(s) 260
MalI GATC 1 cut(s) 450
MboI GATC 1 cut(s) 448
MboII GAAGA 2 cut(s) 308, 566
MhlI GDGCHC 1 cut(s) 259
MluCI AATT 1 cut(s) 172
MlyI GAGTC 2 cut(s) 50, 564
MnlI CCTC 8 cut(s) 52, 70, 139, 202, 215, 334, 380, 508
MroI TCCGGA 1 cut(s) 153
MseI TTAA 2 cut(s) 71, 507
MspA1I CMGCKG 1 cut(s) 166
MspI CCGG 1 cut(s) 154
MspR9I CCNGG 4 cut(s) 53, 319, 357, 383
MvaI CCWGG 4 cut(s) 53, 319, 357, 383
NdeII GATC 1 cut(s) 448
NlaIII CATG 3 cut(s) 295, 449, 505
NlaIV GGNNCC 1 cut(s) 368
NmuCI GTSAC 1 cut(s) 260
PfeI GAWTC 1 cut(s) 29
PfoI TCCNGGA 1 cut(s) 317
PkrI GCNGC 1 cut(s) 168
PleI GAGTC 2 cut(s) 49, 564
PpsI GAGTC 2 cut(s) 49, 564
Psp6I CCWGG 4 cut(s) 51, 317, 355, 381
PspGI CCWGG 4 cut(s) 51, 317, 355, 381
PspN4I GGNNCC 1 cut(s) 368
PspPI GGNCC 1 cut(s) 366
PstI CTGCAG 1 cut(s) 425
PvuII CAGCTG 1 cut(s) 166
RsaI GTAC 2 cut(s) 108, 247
RsaNI GTAC 2 cut(s) 107, 246
SaqAI TTAA 2 cut(s) 71, 507
SatI GCNGC 1 cut(s) 167
Sau3AI GATC 1 cut(s) 448
Sau96I GGNCC 1 cut(s) 366
SbfI CCTGCAGG 1 cut(s) 425
SchI GAGTC 2 cut(s) 50, 564
ScrFI CCNGG 4 cut(s) 53, 319, 357, 383
SdaI CCTGCAGG 1 cut(s) 425
SduI GDGCHC 1 cut(s) 259
SetI ASST 8 cut(s) 10, 168, 213, 345, 422, 468, 564, 599
SfcI CTRYAG 1 cut(s) 421
SinI GGWCC 1 cut(s) 366
Sse8387I CCTGCAGG 1 cut(s) 425
Sse9I AATT 1 cut(s) 172
SsiI CCGC 1 cut(s) 199
SspI AATATT 1 cut(s) 13
StyD4I CCNGG 4 cut(s) 51, 317, 355, 381
TaaI ACNGT 1 cut(s) 409
TaqI TCGA 2 cut(s) 39, 279
TasI AATT 1 cut(s) 172
TatI WGTACW 1 cut(s) 245
TfiI GAWTC 1 cut(s) 29
Tru1I TTAA 2 cut(s) 71, 507
Tru9I TTAA 2 cut(s) 71, 507
TscAI CASTG 2 cut(s) 541, 555
TseFI GTSAC 1 cut(s) 260
TseI GCWGC 1 cut(s) 166
Tsp45I GTSAC 1 cut(s) 260
TspDTI ATGAA 1 cut(s) 74
TspRI CASTG 2 cut(s) 541, 555
VpaK11BI GGWCC 1 cut(s) 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.