RchiOBHm_Chr5g0007501

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000082
Physical Location & Seq
Forward (+)
4716829 .. 4717788
960 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28854

Sequence Viewer

Length: 609 bp
ATGGCGGACTACCTACCGGAACATGTGATAGTTCAAATCATGGAGAGGTTGCCGATCAAATCCCTAATCCGCTTCACCTCCGTTTCGAAACGCTGGCGTTTCATCATATTGTCCGACCCAAATTTCGCCAAATCCCGATTCCAGCAAACCCGAAGTCGCAGAGTCCTCCTCTGCCACGAATGCGAATACGATAGAATGAGTTTCCCCTGCCCCGACTGCCCAGAACCTGAGTTCGGATCCCGAGACTTGGAGACGCCGTGGTCCACCGAAGACAGAAAGGTCAGATGTCCGTTCAAGAAGCCGGGCGATGAACTCCAATCACTCTACTCGTGCAATGGTTTAGTATGTGTAACTCTTTATCATCGACACTGCATGGAGGATTTGGACATTTATATTTGGAACCCATCAACTCAATTCTTCAAAAAACTACCCGCTTCTCCTTTACAAGTACAAAAGAGCTCCAAAGTACTATACGCTGTGATGGTTTTGGCTACTTGTCAGCCACCGGCGACTACAAAGTTCTCATCTCATCAGACAGTGAGCAATACATCTTCTCATCGAACACTGACATTTGGAAAAGGATCGAAGTCCCTTTCCGCCTTTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

202

Amino Acids

23.26

Weight (kDa)

9.08

Isoelectric Point (pI)

56.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 3 - 39 6.7e-08 F-box-like
F-box PF00646 5 - 42 1.2e-09 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000082)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17540 FvH4_1g17540 FvH4_1g17540 FvH4_1g17540 FvH4_1g17550 FvH4_1g17560 FvH4_1g17570 FvH4_1g17570 FvH4_1g17570 FvH4_1g17581 FvH4_1g18380 FvH4_1g18391 FvH4_1g18430 FvH4_1g18470 FvH4_1g18480 FvH4_1g18480 FvH4_1g18480 FvH4_1g18870 FvH4_2g36701 FvH4_2g36701 FvH4_2g36710 FvH4_2g36711 FvH4_3g01100 FvH4_3g01100 FvH4_3g14940 FvH4_3g14941 FvH4_3g14950 FvH4_3g14952 FvH4_3g14954 FvH4_3g14954 FvH4_3g14954 FvH4_3g15782 FvH4_3g32340 FvH4_3g32350 FvH4_3g32390 FvH4_3g32390 FvH4_3g44560 FvH4_3g44581 FvH4_3g44650 FvH4_3g44660 FvH4_3g44671 FvH4_3g45110 FvH4_3g45120 FvH4_3g45161 FvH4_4g30361 FvH4_6g14790 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14972 FvH4_6g14980 FvH4_6g14980 FvH4_6g14981 FvH4_6g14990 FvH4_6g14991 FvH4_6g14991 FvH4_6g14993 FvH4_6g14993 FvH4_6g14994 FvH4_6g15010 FvH4_6g19961
malus_domestica MD09G1138900.v1.1
prunus_persica Prupe.6G214500_v2.0.a1 Prupe.6G214600_v2.0.a1 Prupe.6G214700_v2.0.a1 Prupe.6G214900_v2.0.a1 Prupe.6G215100_v2.0.a1 Prupe.7G008100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321661 RchiOBHm_Chr1g0378141 RchiOBHm_Chr2g0101031 RchiOBHm_Chr2g0107781 RchiOBHm_Chr2g0107801 RchiOBHm_Chr2g0107811 RchiOBHm_Chr2g0107821 RchiOBHm_Chr2g0107841 RchiOBHm_Chr2g0107851 RchiOBHm_Chr2g0107881 RchiOBHm_Chr2g0107891 RchiOBHm_Chr2g0109731 RchiOBHm_Chr2g0109761 RchiOBHm_Chr2g0109771 RchiOBHm_Chr2g0109781 RchiOBHm_Chr3g0468171 RchiOBHm_Chr3g0468191 RchiOBHm_Chr3g0475411 RchiOBHm_Chr5g0007501 RchiOBHm_Chr5g0024531 RchiOBHm_Chr5g0053901 RchiOBHm_Chr5g0059111 RchiOBHm_Chr5g0059201 RchiOBHm_Chr5g0059211 RchiOBHm_Chr5g0059291 RchiOBHm_Chr5g0059301 RchiOBHm_Chr5g0059321 RchiOBHm_Chr5g0059551 RchiOBHm_Chr5g0081341 RchiOBHm_Chr7g0211081
rosa_laevigata RLG00000003023 RLG00000017039 RLG00000017135 RLG00000017616 RLG00000017620 RLG00000017621 RLG00000017622 RLG00000017623 RLG00000017624 RLG00000017625 RLG00000017762 RLG00000017763 RLG00000017764 RLG00000017765 RLG00000024443 RLG00000026103 RLG00000031462 RLG00000035283 RLG00000036923 RLG00000036924 RLG00000036925
rosa_multiflora Rmu_co7981142.1_g000001 Rmu_co8037462.1_g000001 Rmu_co8043938.1_g000001 Rmu_co8085092.1_g000001 Rmu_co8243479.1_g000002 Rmu_co8254857.1_g000001 Rmu_co8270991.1_g000001 Rmu_co8304467.1_g000001 Rmu_co8322247.1_g000001 Rmu_sc0000186.1_g000008 Rmu_sc0000375.1_g000022 Rmu_sc0000625.1_g000006 Rmu_sc0001465.1_g000001 Rmu_sc0001484.1_g000034 Rmu_sc0001484.1_g000035 Rmu_sc0001484.1_g000036 Rmu_sc0001484.1_g000038 Rmu_sc0001484.1_g000041 Rmu_sc0001484.1_g000042 Rmu_sc0001793.1_g000054 Rmu_sc0001810.1_g000002 Rmu_sc0001810.1_g000003 Rmu_sc0001810.1_g000004 Rmu_sc0001862.1_g000003 Rmu_sc0002076.1_g000008 Rmu_sc0002076.1_g000009 Rmu_sc0002983.1_g000017 Rmu_sc0002983.1_g000035 Rmu_sc0002983.1_g000038 Rmu_sc0003121.1_g000002 Rmu_sc0003121.1_g000005 Rmu_sc0003121.1_g000006 Rmu_sc0003121.1_g000007 Rmu_sc0003659.1_g000007 Rmu_sc0004524.1_g000009 Rmu_sc0004524.1_g000010 Rmu_sc0004524.1_g000012 Rmu_sc0004650.1_g000003 Rmu_sc0006215.1_g000003 Rmu_sc0006889.1_g000020 Rmu_sc0006889.1_g000030 Rmu_sc0006959.1_g000021 Rmu_sc0007173.1_g000008 Rmu_sc0007698.1_g000019 Rmu_sc0007768.1_g000009 Rmu_sc0008992.1_g000002 Rmu_sc0008992.1_g000004 Rmu_sc0009575.1_g000001 Rmu_sc0009575.1_g000008 Rmu_sc0009650.1_g000002 Rmu_sc0009650.1_g000005 Rmu_sc0009650.1_g000009 Rmu_sc0012421.1_g000005 Rmu_sc0012471.1_g000023 Rmu_sc0012471.1_g000025 Rmu_sc0012670.1_g000002 Rmu_sc0012670.1_g000003 Rmu_sc0016637.1_g000005 Rmu_sc0018174.1_g000002 Rmu_sc0031424.1_g000001 Rmu_ssc0000182.1_g000007 Rmu_ssc0000182.1_g000010 Rmu_ssc0000432.1_g000029 Rmu_ssc0000432.1_g000035 Rmu_ssc0000432.1_g000036 Rmu_ssc0000432.1_g000042
rosa_roxburghii Rroxscaffold_153G00436690 Rroxscaffold_1G00002200 Rroxscaffold_1G00002220 Rroxscaffold_1G00021160 Rroxscaffold_1G00021240 Rroxscaffold_1G00021310 Rroxscaffold_1G00025950 Rroxscaffold_1G00026710 Rroxscaffold_1G00054720 Rroxscaffold_2G00104770 Rroxscaffold_2G00104780 Rroxscaffold_2G00133820 Rroxscaffold_2G00133950 Rroxscaffold_2G00133970 Rroxscaffold_2G00133980 Rroxscaffold_2G00133990 Rroxscaffold_2G00135690 Rroxscaffold_2G00135820 Rroxscaffold_2G00135850 Rroxscaffold_2G00135860 Rroxscaffold_2G00135890 Rroxscaffold_2G00135910 Rroxscaffold_2G00135920 Rroxscaffold_2G00135930 Rroxscaffold_2G00135940 Rroxscaffold_2G00141620 Rroxscaffold_3G00248120 Rroxscaffold_4G00277310 Rroxscaffold_6G00406330 Rroxscaffold_6G00412930 Rroxscaffold_6G00412940 Rroxscaffold_6G00412950 Rroxscaffold_6G00412970 Rroxscaffold_6G00413290
rosa_rugosa Rorug01G0019000 Rorug02G0095500 Rorug02G0095600 Rorug02G0095700 Rorug02G0095800 Rorug02G0095900 Rorug02G0096000 Rorug02G0096100 Rorug02G0096200 Rorug02G0147500 Rorug02G0147600 Rorug02G0147700 Rorug02G0147800 Rorug02G0148100 Rorug02G0148300 Rorug02G0148400 Rorug02G0148500 Rorug02G0148600 Rorug02G0149800 Rorug02G0162500 Rorug02G0162600 Rorug02G0162700 Rorug02G0162800 Rorug02G0510300 Rorug03G0090600 Rorug03G0093700 Rorug03G0093800 Rorug03G0093900 Rorug03G0094000 Rorug03G0148600 Rorug04G0427700 Rorug05G0083700 Rorug05G0321200 Rorug05G0321300 Rorug05G0321400 Rorug05G0321500 Rorug05G0321600 Rorug05G0321900 Rorug05G0322000 Rorug05G0322000 Rorug05G0322300 Rorug05G0475400 Rorug05G0475500 Rorug05G0475600.1 Rorug05G0475700 Rorug05G0475900
rosa_samantha Rh1DG457400 Rh2AG197800 Rh2AG208800 Rh5AG386200 Rh5BG397600 Rh5DG174500 Rh5DG381100 Rh5DG414700 Rh5DG414800 Rh5DG415500 Rh5DG415800
rosa_wichuraiana Rw0G010830 Rw0G010840 Rw0G010870 Rw0G015860 Rw0G015870 Rw1G037410 Rw1G040530 Rw2G011200 Rw2G011230 Rw2G015590 Rw2G015600 Rw2G015610 Rw2G015630 Rw2G015640 Rw2G015660 Rw2G015680 Rw2G015690 Rw3G013400 Rw3G013410 Rw3G018040 Rw5G036340 Rw5G036390 Rw5G049010 Rw5G049020 Rw5G049030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 259, 278
AciI CCGC 4 cut(s) 5, 70, 432, 597
AclWI GGATC 3 cut(s) 231, 244, 589
AcsI RAATTY 1 cut(s) 121
AcyI GRCGYC 1 cut(s) 254
AfaI GTAC 2 cut(s) 450, 468
AfiI CCNNNNNNNGG 2 cut(s) 233, 247
AflIII ACRYGT 1 cut(s) 22
AgsI TTSAA 3 cut(s) 35, 295, 421
AjuI GAANNNNNNNTTGG 2 cut(s) 122, 154
AluBI AGCT 1 cut(s) 459
AluI AGCT 1 cut(s) 459
Alw21I GWGCWC 1 cut(s) 461
Alw26I GTCTC 2 cut(s) 237, 245
AlwI GGATC 3 cut(s) 231, 244, 589
AlwNI CAGNNNCTG 1 cut(s) 227
Ama87I CYCGRG 1 cut(s) 240
ApoI RAATTY 1 cut(s) 121
ArsI GACNNNNNNTTYG 4 cut(s) 107, 139, 139, 171
AspS9I GGNCC 1 cut(s) 261
AsuC2I CCSGG 1 cut(s) 303
AsuHPI GGTGA 1 cut(s) 67
AsuII TTCGAA 1 cut(s) 86
AvaI CYCGRG 1 cut(s) 240
AvaII GGWCC 1 cut(s) 261
BamHI GGATCC 1 cut(s) 236
BanII GRGCYC 1 cut(s) 461
BauI CACGAG 1 cut(s) 328
BbsI GAAGAC 1 cut(s) 276
Bbv12I GWGCWC 1 cut(s) 461
BccI CCATC 2 cut(s) 412, 475
BceAI ACGGC 1 cut(s) 241
BcnI CCSGG 1 cut(s) 303
BcoDI GTCTC 2 cut(s) 237, 245
BmcAI AGTACT 1 cut(s) 468
Bme1390I CCNGG 1 cut(s) 303
Bme18I GGWCC 1 cut(s) 261
BmeT110I CYCGRG 1 cut(s) 240
BmgT120I GGNCC 1 cut(s) 261
BmiI GGNNCC 2 cut(s) 238, 401
BmrFI CCNGG 1 cut(s) 303
BpiI GAAGAC 1 cut(s) 276
BplI GAGNNNNNCTC 2 cut(s) 153, 185
Bpu14I TTCGAA 1 cut(s) 86
BpuMI CCSGG 1 cut(s) 303
BsaHI GRCGYC 1 cut(s) 254
BsaJI CCNNGG 1 cut(s) 257
BsaWI WCCGGW 1 cut(s) 16
BsaXI ACNNNNNCTCC 2 cut(s) 242, 272
Bsc4I CCNNNNNNNGG 2 cut(s) 233, 247
Bse118I RCCGGY 1 cut(s) 505
Bse3DI GCAATG 1 cut(s) 340
BseDI CCNNGG 1 cut(s) 257
BseLI CCNNNNNNNGG 2 cut(s) 233, 247
BseMI GCAATG 1 cut(s) 340
BseMII CTCAG 1 cut(s) 219
BseRI GAGGAG 1 cut(s) 158
BsiHKAI GWGCWC 1 cut(s) 461
BsiHKCI CYCGRG 1 cut(s) 240
BsiSI CCGG 3 cut(s) 17, 302, 506
BslFI GGGAC 1 cut(s) 574
BslI CCNNNNNNNGG 2 cut(s) 233, 247
BsmAI GTCTC 2 cut(s) 237, 245
BsmBI CGTCTC 1 cut(s) 245
BsmFI GGGAC 1 cut(s) 574
BsmI GAATGC 1 cut(s) 185
BsoBI CYCGRG 1 cut(s) 240
Bsp119I TTCGAA 1 cut(s) 86
Bsp1286I GDGCHC 1 cut(s) 461
Bsp143I GATC 3 cut(s) 54, 236, 581
BspACI CCGC 4 cut(s) 5, 70, 432, 597
BspCNI CTCAG 1 cut(s) 220
BspLI GGNNCC 2 cut(s) 238, 401
BspPI GGATC 3 cut(s) 231, 244, 589
BspT104I TTCGAA 1 cut(s) 86
BsrDI GCAATG 1 cut(s) 340
BsrFI RCCGGY 1 cut(s) 505
BssAI RCCGGY 1 cut(s) 505
BssECI CCNNGG 1 cut(s) 257
BssMI GATC 3 cut(s) 54, 236, 581
BssNI GRCGYC 1 cut(s) 254
BssSI CACGAG 1 cut(s) 328
Bst2BI CACGAG 1 cut(s) 328
Bst4CI ACNGT 1 cut(s) 538
BstACI GRCGYC 1 cut(s) 254
BstBI TTCGAA 1 cut(s) 86
BstC8I GCNNGC 1 cut(s) 95
BstDEI CTNAG 1 cut(s) 228
BstDSI CCRYGG 1 cut(s) 257
BstKTI GATC 3 cut(s) 57, 239, 584
BstMAI GTCTC 2 cut(s) 237, 245
BstMBI GATC 3 cut(s) 54, 236, 581
BstMWI GCNNNNNNNGC 2 cut(s) 180, 216
BstNSI RCATGY 1 cut(s) 26
BstSCI CCNGG 1 cut(s) 301
BstV2I GAAGAC 1 cut(s) 276
BstX2I RGATCY 1 cut(s) 236
BstYI RGATCY 1 cut(s) 236
BtgI CCRYGG 1 cut(s) 257
BtgZI GCGATG 1 cut(s) 321
BtsI GCAGTG 1 cut(s) 367
BtsIMutI CAGTG 3 cut(s) 367, 543, 563
Cac8I GCNNGC 1 cut(s) 95
CaiI CAGNNNCTG 1 cut(s) 227
Cfr10I RCCGGY 1 cut(s) 505
Cfr13I GGNCC 1 cut(s) 261
CseI GACGC 1 cut(s) 262
Csp6I GTAC 2 cut(s) 449, 467
CviAII CATG 3 cut(s) 23, 40, 373
CviJI RGCY 4 cut(s) 301, 459, 491, 502
CviKI_1 RGCY 4 cut(s) 301, 459, 491, 502
CviQI GTAC 2 cut(s) 449, 467
DdeI CTNAG 1 cut(s) 228
DpnI GATC 3 cut(s) 56, 238, 583
DpnII GATC 3 cut(s) 54, 236, 581
DrdI GACNNNNNNGTC 2 cut(s) 259, 278
DseDI GACNNNNNNGTC 2 cut(s) 259, 278
EciI GGCGGA 2 cut(s) 20, 586
Ecl136II GAGCTC 1 cut(s) 459
Eco24I GRGCYC 1 cut(s) 461
Eco47I GGWCC 1 cut(s) 261
Eco53kI GAGCTC 1 cut(s) 459
Eco88I CYCGRG 1 cut(s) 240
EcoICRI GAGCTC 1 cut(s) 459
EcoT38I GRGCYC 1 cut(s) 461
Esp3I CGTCTC 1 cut(s) 245
FaeI CATG 3 cut(s) 26, 43, 376
FaiI YATR 7 cut(s) 24, 41, 107, 346, 374, 393, 472
FaqI GGGAC 1 cut(s) 574
FatI CATG 3 cut(s) 22, 39, 372
FauI CCCGC 1 cut(s) 439
FriOI GRGCYC 1 cut(s) 461
HapII CCGG 3 cut(s) 17, 302, 506
HgaI GACGC 1 cut(s) 262
Hin1I GRCGYC 1 cut(s) 254
Hin1II CATG 3 cut(s) 26, 43, 376
HinfI GANTC 2 cut(s) 138, 162
HpaII CCGG 3 cut(s) 17, 302, 506
HphI GGTGA 1 cut(s) 67
Hpy166II GTNNAC 1 cut(s) 264
Hpy188I TCNGA 4 cut(s) 115, 236, 284, 534
Hpy188III TCNNGA 3 cut(s) 135, 240, 295
Hpy8I GTNNAC 1 cut(s) 264
HpyCH4III ACNGT 1 cut(s) 538
HpyCH4V TGCA 2 cut(s) 333, 372
HpyF10VI GCNNNNNNNGC 2 cut(s) 180, 216
HpyF3I CTNAG 1 cut(s) 228
Hsp92I GRCGYC 1 cut(s) 254
Hsp92II CATG 3 cut(s) 26, 43, 376
Kzo9I GATC 3 cut(s) 54, 236, 581
LmnI GCTCC 1 cut(s) 464
LpnPI CCDG 8 cut(s) 30, 79, 155, 220, 234, 240, 315, 519
MaeIII GTNAC 1 cut(s) 349
MalI GATC 3 cut(s) 56, 238, 583
MboI GATC 3 cut(s) 54, 236, 581
MboII GAAGA 3 cut(s) 281, 409, 543
MflI RGATCY 1 cut(s) 236
MhlI GDGCHC 1 cut(s) 461
MluCI AATT 2 cut(s) 121, 413
MlyI GAGTC 1 cut(s) 171
MmeI TCCRAC 1 cut(s) 138
MnlI CCTC 5 cut(s) 39, 88, 176, 179, 370
MspI CCGG 3 cut(s) 17, 302, 506
MspR9I CCNGG 1 cut(s) 303
Mva1269I GAATGC 1 cut(s) 185
MwoI GCNNNNNNNGC 2 cut(s) 180, 216
NciI CCSGG 1 cut(s) 303
NdeII GATC 3 cut(s) 54, 236, 581
NlaIII CATG 3 cut(s) 26, 43, 376
NlaIV GGNNCC 2 cut(s) 238, 401
NspI RCATGY 1 cut(s) 26
NspV TTCGAA 1 cut(s) 86
PciI ACATGT 1 cut(s) 22
PctI GAATGC 1 cut(s) 185
PfeI GAWTC 1 cut(s) 138
PleI GAGTC 1 cut(s) 170
PpsI GAGTC 1 cut(s) 170
PscI ACATGT 1 cut(s) 22
Psp124BI GAGCTC 1 cut(s) 461
PspN4I GGNNCC 2 cut(s) 238, 401
PspPI GGNCC 1 cut(s) 261
PstNI CAGNNNCTG 1 cut(s) 227
PsuI RGATCY 1 cut(s) 236
RsaI GTAC 2 cut(s) 450, 468
RsaNI GTAC 2 cut(s) 449, 467
SacI GAGCTC 1 cut(s) 461
Sau3AI GATC 3 cut(s) 54, 236, 581
Sau96I GGNCC 1 cut(s) 261
ScaI AGTACT 1 cut(s) 468
SchI GAGTC 1 cut(s) 171
ScrFI CCNGG 1 cut(s) 303
SduI GDGCHC 1 cut(s) 461
SetI ASST 6 cut(s) 15, 50, 80, 229, 282, 461
SfuI TTCGAA 1 cut(s) 86
SgrAI CRCCGGYG 1 cut(s) 505
SinI GGWCC 1 cut(s) 261
Sse9I AATT 2 cut(s) 121, 413
SsiI CCGC 4 cut(s) 5, 70, 432, 597
SstI GAGCTC 1 cut(s) 461
StyD4I CCNGG 1 cut(s) 301
TaaI ACNGT 1 cut(s) 538
TaqI TCGA 4 cut(s) 86, 364, 559, 584
TasI AATT 2 cut(s) 121, 413
TatI WGTACW 2 cut(s) 448, 466
TfiI GAWTC 1 cut(s) 138
TscAI CASTG 3 cut(s) 374, 543, 570
TspDTI ATGAA 2 cut(s) 91, 324
TspGWI ACGGA 2 cut(s) 70, 279
TspRI CASTG 3 cut(s) 374, 543, 570
VpaK11BI GGWCC 1 cut(s) 261
XapI RAATTY 1 cut(s) 121
XceI RCATGY 1 cut(s) 26
ZrmI AGTACT 1 cut(s) 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.