Rroxscaffold_2G00135920

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
73419713 .. 73420321
609 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00135920.1

Sequence Viewer

Length: 609 bp
ATGGCAGAAACAGAAGACCTACCTGAAGATATTATAGTGAACATCTTCTCTAGATTGCCCGTCAAGTCTTTAATCCGATTCACCTCCGTCTCAAAACGTCTGCGTTTCACTATATTGTCGGATCCCAAATTCGCCCAATCCCAACTAAAAGCAGCTCGTCAGCAGAAAACCCTCAGCTGCAGACTCCTCGTCTCCACCGACACTCCTCAACTCGAATCCCTACACTTGGGTGATACGCCGTCGTTTGGAGAGCCTTCATCCGTTAGAAAGCTCAGCTTCCCTTTCCAGCCACAACCGGGCGGTTATGTCAAGCTGCTGGGCTCCTGCAATGGTCTGGTACTCGTAGCTGTTGATAATAAATTATTTTTTATCTGGAACCCATCCATTGGGTTCTTGAAGCTATTACCTGATCCAGGTTTTCCCTTAAATGATAATGTGCTACCCTATTATGGTGTTGCCTATTTATCCGCCACCGATGACTACAAAGTTTTGGTAGCCTCCTATTGCATTCGTGAACAGGAGTTAGAGGTCCAGATGTTCTCATTGAGAACTCACATTGGGGCGAAAATAAAGGGACAAAACGGGACGAAATCATCCCAGTGGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

202

Amino Acids

22.6

Weight (kDa)

8.96

Isoelectric Point (pI)

45.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 5 - 39 1.6e-07 F-box-like
F-box PF00646 6 - 43 8e-10 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000082)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17540 FvH4_1g17540 FvH4_1g17540 FvH4_1g17540 FvH4_1g17550 FvH4_1g17560 FvH4_1g17570 FvH4_1g17570 FvH4_1g17570 FvH4_1g17581 FvH4_1g18380 FvH4_1g18391 FvH4_1g18430 FvH4_1g18470 FvH4_1g18480 FvH4_1g18480 FvH4_1g18480 FvH4_1g18870 FvH4_2g36701 FvH4_2g36701 FvH4_2g36710 FvH4_2g36711 FvH4_3g01100 FvH4_3g01100 FvH4_3g14940 FvH4_3g14941 FvH4_3g14950 FvH4_3g14952 FvH4_3g14954 FvH4_3g14954 FvH4_3g14954 FvH4_3g15782 FvH4_3g32340 FvH4_3g32350 FvH4_3g32390 FvH4_3g32390 FvH4_3g44560 FvH4_3g44581 FvH4_3g44650 FvH4_3g44660 FvH4_3g44671 FvH4_3g45110 FvH4_3g45120 FvH4_3g45161 FvH4_4g30361 FvH4_6g14790 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14972 FvH4_6g14980 FvH4_6g14980 FvH4_6g14981 FvH4_6g14990 FvH4_6g14991 FvH4_6g14991 FvH4_6g14993 FvH4_6g14993 FvH4_6g14994 FvH4_6g15010 FvH4_6g19961
malus_domestica MD09G1138900.v1.1
prunus_persica Prupe.6G214500_v2.0.a1 Prupe.6G214600_v2.0.a1 Prupe.6G214700_v2.0.a1 Prupe.6G214900_v2.0.a1 Prupe.6G215100_v2.0.a1 Prupe.7G008100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321661 RchiOBHm_Chr1g0378141 RchiOBHm_Chr2g0101031 RchiOBHm_Chr2g0107781 RchiOBHm_Chr2g0107801 RchiOBHm_Chr2g0107811 RchiOBHm_Chr2g0107821 RchiOBHm_Chr2g0107841 RchiOBHm_Chr2g0107851 RchiOBHm_Chr2g0107881 RchiOBHm_Chr2g0107891 RchiOBHm_Chr2g0109731 RchiOBHm_Chr2g0109761 RchiOBHm_Chr2g0109771 RchiOBHm_Chr2g0109781 RchiOBHm_Chr3g0468171 RchiOBHm_Chr3g0468191 RchiOBHm_Chr3g0475411 RchiOBHm_Chr5g0007501 RchiOBHm_Chr5g0024531 RchiOBHm_Chr5g0053901 RchiOBHm_Chr5g0059111 RchiOBHm_Chr5g0059201 RchiOBHm_Chr5g0059211 RchiOBHm_Chr5g0059291 RchiOBHm_Chr5g0059301 RchiOBHm_Chr5g0059321 RchiOBHm_Chr5g0059551 RchiOBHm_Chr5g0081341 RchiOBHm_Chr7g0211081
rosa_laevigata RLG00000003023 RLG00000017039 RLG00000017135 RLG00000017616 RLG00000017620 RLG00000017621 RLG00000017622 RLG00000017623 RLG00000017624 RLG00000017625 RLG00000017762 RLG00000017763 RLG00000017764 RLG00000017765 RLG00000024443 RLG00000026103 RLG00000031462 RLG00000035283 RLG00000036923 RLG00000036924 RLG00000036925
rosa_multiflora Rmu_co7981142.1_g000001 Rmu_co8037462.1_g000001 Rmu_co8043938.1_g000001 Rmu_co8085092.1_g000001 Rmu_co8243479.1_g000002 Rmu_co8254857.1_g000001 Rmu_co8270991.1_g000001 Rmu_co8304467.1_g000001 Rmu_co8322247.1_g000001 Rmu_sc0000186.1_g000008 Rmu_sc0000375.1_g000022 Rmu_sc0000625.1_g000006 Rmu_sc0001465.1_g000001 Rmu_sc0001484.1_g000034 Rmu_sc0001484.1_g000035 Rmu_sc0001484.1_g000036 Rmu_sc0001484.1_g000038 Rmu_sc0001484.1_g000041 Rmu_sc0001484.1_g000042 Rmu_sc0001793.1_g000054 Rmu_sc0001810.1_g000002 Rmu_sc0001810.1_g000003 Rmu_sc0001810.1_g000004 Rmu_sc0001862.1_g000003 Rmu_sc0002076.1_g000008 Rmu_sc0002076.1_g000009 Rmu_sc0002983.1_g000017 Rmu_sc0002983.1_g000035 Rmu_sc0002983.1_g000038 Rmu_sc0003121.1_g000002 Rmu_sc0003121.1_g000005 Rmu_sc0003121.1_g000006 Rmu_sc0003121.1_g000007 Rmu_sc0003659.1_g000007 Rmu_sc0004524.1_g000009 Rmu_sc0004524.1_g000010 Rmu_sc0004524.1_g000012 Rmu_sc0004650.1_g000003 Rmu_sc0006215.1_g000003 Rmu_sc0006889.1_g000020 Rmu_sc0006889.1_g000030 Rmu_sc0006959.1_g000021 Rmu_sc0007173.1_g000008 Rmu_sc0007698.1_g000019 Rmu_sc0007768.1_g000009 Rmu_sc0008992.1_g000002 Rmu_sc0008992.1_g000004 Rmu_sc0009575.1_g000001 Rmu_sc0009575.1_g000008 Rmu_sc0009650.1_g000002 Rmu_sc0009650.1_g000005 Rmu_sc0009650.1_g000009 Rmu_sc0012421.1_g000005 Rmu_sc0012471.1_g000023 Rmu_sc0012471.1_g000025 Rmu_sc0012670.1_g000002 Rmu_sc0012670.1_g000003 Rmu_sc0016637.1_g000005 Rmu_sc0018174.1_g000002 Rmu_sc0031424.1_g000001 Rmu_ssc0000182.1_g000007 Rmu_ssc0000182.1_g000010 Rmu_ssc0000432.1_g000029 Rmu_ssc0000432.1_g000035 Rmu_ssc0000432.1_g000036 Rmu_ssc0000432.1_g000042
rosa_roxburghii Rroxscaffold_153G00436690 Rroxscaffold_1G00002200 Rroxscaffold_1G00002220 Rroxscaffold_1G00021160 Rroxscaffold_1G00021240 Rroxscaffold_1G00021310 Rroxscaffold_1G00025950 Rroxscaffold_1G00026710 Rroxscaffold_1G00054720 Rroxscaffold_2G00104770 Rroxscaffold_2G00104780 Rroxscaffold_2G00133820 Rroxscaffold_2G00133950 Rroxscaffold_2G00133970 Rroxscaffold_2G00133980 Rroxscaffold_2G00133990 Rroxscaffold_2G00135690 Rroxscaffold_2G00135820 Rroxscaffold_2G00135850 Rroxscaffold_2G00135860 Rroxscaffold_2G00135890 Rroxscaffold_2G00135910 Rroxscaffold_2G00135920 Rroxscaffold_2G00135930 Rroxscaffold_2G00135940 Rroxscaffold_2G00141620 Rroxscaffold_3G00248120 Rroxscaffold_4G00277310 Rroxscaffold_6G00406330 Rroxscaffold_6G00412930 Rroxscaffold_6G00412940 Rroxscaffold_6G00412950 Rroxscaffold_6G00412970 Rroxscaffold_6G00413290
rosa_rugosa Rorug01G0019000 Rorug02G0095500 Rorug02G0095600 Rorug02G0095700 Rorug02G0095800 Rorug02G0095900 Rorug02G0096000 Rorug02G0096100 Rorug02G0096200 Rorug02G0147500 Rorug02G0147600 Rorug02G0147700 Rorug02G0147800 Rorug02G0148100 Rorug02G0148300 Rorug02G0148400 Rorug02G0148500 Rorug02G0148600 Rorug02G0149800 Rorug02G0162500 Rorug02G0162600 Rorug02G0162700 Rorug02G0162800 Rorug02G0510300 Rorug03G0090600 Rorug03G0093700 Rorug03G0093800 Rorug03G0093900 Rorug03G0094000 Rorug03G0148600 Rorug04G0427700 Rorug05G0083700 Rorug05G0321200 Rorug05G0321300 Rorug05G0321400 Rorug05G0321500 Rorug05G0321600 Rorug05G0321900 Rorug05G0322000 Rorug05G0322000 Rorug05G0322300 Rorug05G0475400 Rorug05G0475500 Rorug05G0475600.1 Rorug05G0475700 Rorug05G0475900
rosa_samantha Rh1DG457400 Rh2AG197800 Rh2AG208800 Rh5AG386200 Rh5BG397600 Rh5DG174500 Rh5DG381100 Rh5DG414700 Rh5DG414800 Rh5DG415500 Rh5DG415800
rosa_wichuraiana Rw0G010830 Rw0G010840 Rw0G010870 Rw0G015860 Rw0G015870 Rw1G037410 Rw1G040530 Rw2G011200 Rw2G011230 Rw2G015590 Rw2G015600 Rw2G015610 Rw2G015630 Rw2G015640 Rw2G015660 Rw2G015680 Rw2G015690 Rw3G013400 Rw3G013410 Rw3G018040 Rw5G036340 Rw5G036390 Rw5G049010 Rw5G049020 Rw5G049030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 386
AciI CCGC 2 cut(s) 300, 468
AclWI GGATC 3 cut(s) 116, 129, 404
AcsI RAATTY 1 cut(s) 128
AcuI CTGAAG 1 cut(s) 45
AfaI GTAC 1 cut(s) 339
AfiI CCNNNNNNNGG 6 cut(s) 226, 245, 296, 386, 413, 449
AgsI TTSAA 1 cut(s) 397
AhdI GACNNNNNGTC 1 cut(s) 188
AjnI CCWGG 1 cut(s) 412
AleI CACNNNNGTG 1 cut(s) 228
AluBI AGCT 7 cut(s) 155, 177, 271, 276, 313, 347, 400
AluI AGCT 7 cut(s) 155, 177, 271, 276, 313, 347, 400
Alw26I GTCTC 2 cut(s) 94, 196
AlwI GGATC 3 cut(s) 116, 129, 404
ApeKI GCWGC 3 cut(s) 152, 177, 313
ApoI RAATTY 1 cut(s) 128
Asp700I GAANNNNTTC 1 cut(s) 44
AspS9I GGNCC 1 cut(s) 529
AsuC2I CCSGG 1 cut(s) 297
AsuHPI GGTGA 2 cut(s) 73, 242
AvaII GGWCC 1 cut(s) 529
BamHI GGATCC 1 cut(s) 121
BanII GRGCYC 1 cut(s) 323
BbsI GAAGAC 1 cut(s) 21
BbvCI CCTCAGC 1 cut(s) 173
BbvI GCAGC 3 cut(s) 164, 164, 300
BccI CCATC 1 cut(s) 388
BceAI ACGGC 1 cut(s) 223
BcgI CGANNNNNNTGC 2 cut(s) 169, 203
BciT130I CCWGG 1 cut(s) 414
BcnI CCSGG 1 cut(s) 297
BcoDI GTCTC 2 cut(s) 94, 196
BfaI CTAG 1 cut(s) 51
BfmI CTRYAG 1 cut(s) 178
BisI GCNGC 3 cut(s) 153, 178, 314
BlpI GCTNAGC 1 cut(s) 272
BlsI GCNGC 3 cut(s) 154, 179, 315
Bme1390I CCNGG 2 cut(s) 297, 414
Bme18I GGWCC 1 cut(s) 529
BmeRI GACNNNNNGTC 1 cut(s) 188
BmgT120I GGNCC 1 cut(s) 529
BmiI GGNNCC 3 cut(s) 123, 322, 377
BmrFI CCNGG 2 cut(s) 297, 414
BmrI ACTGGG 1 cut(s) 592
BmuI ACTGGG 1 cut(s) 592
BpiI GAAGAC 1 cut(s) 21
Bpu10I CCTNAGC 1 cut(s) 173
Bpu1102I GCTNAGC 1 cut(s) 272
BpuMI CCSGG 1 cut(s) 297
BsaXI ACNNNNNCTCC 2 cut(s) 187, 217
Bsc4I CCNNNNNNNGG 6 cut(s) 226, 245, 296, 386, 413, 449
Bse1I ACTGG 1 cut(s) 598
Bse3DI GCAATG 1 cut(s) 334
BseBI CCWGG 1 cut(s) 414
BseGI GGATG 3 cut(s) 257, 380, 593
BseLI CCNNNNNNNGG 6 cut(s) 226, 245, 296, 386, 413, 449
BseMI GCAATG 1 cut(s) 334
BseMII CTCAG 2 cut(s) 187, 286
BseNI ACTGG 1 cut(s) 598
BseRI GAGGAG 2 cut(s) 176, 195
BseXI GCAGC 3 cut(s) 164, 164, 300
BseYI CCCAGC 1 cut(s) 316
BsiSI CCGG 1 cut(s) 296
BslFI GGGAC 2 cut(s) 588, 598
BslI CCNNNNNNNGG 6 cut(s) 226, 245, 296, 386, 413, 449
BsmAI GTCTC 2 cut(s) 94, 196
BsmBI CGTCTC 2 cut(s) 94, 196
BsmFI GGGAC 2 cut(s) 588, 598
BsmI GAATGC 1 cut(s) 507
Bsp1286I GDGCHC 1 cut(s) 323
Bsp143I GATC 2 cut(s) 121, 409
Bsp1720I GCTNAGC 1 cut(s) 272
BspACI CCGC 2 cut(s) 300, 468
BspCNI CTCAG 2 cut(s) 186, 285
BspLI GGNNCC 3 cut(s) 123, 322, 377
BspMAI CTGCAG 1 cut(s) 182
BspPI GGATC 3 cut(s) 116, 129, 404
BsrDI GCAATG 1 cut(s) 334
BsrI ACTGG 1 cut(s) 598
BssMI GATC 2 cut(s) 121, 409
Bst2UI CCWGG 1 cut(s) 414
BstDEI CTNAG 2 cut(s) 173, 272
BstENI CCTNNNNNAGG 1 cut(s) 411
BstF5I GGATG 3 cut(s) 257, 380, 593
BstKTI GATC 2 cut(s) 124, 412
BstMAI GTCTC 2 cut(s) 94, 196
BstMBI GATC 2 cut(s) 121, 409
BstNI CCWGG 1 cut(s) 414
BstSCI CCNGG 2 cut(s) 295, 412
BstSFI CTRYAG 1 cut(s) 178
BstV1I GCAGC 3 cut(s) 164, 164, 300
BstV2I GAAGAC 1 cut(s) 21
BstX2I RGATCY 1 cut(s) 121
BstYI RGATCY 1 cut(s) 121
BtsCI GGATG 3 cut(s) 257, 380, 593
BtsIMutI CAGTG 1 cut(s) 605
Cfr13I GGNCC 1 cut(s) 529
Csp6I GTAC 1 cut(s) 338
CviQI GTAC 1 cut(s) 338
DdeI CTNAG 2 cut(s) 173, 272
DpnI GATC 2 cut(s) 123, 411
DpnII GATC 2 cut(s) 121, 409
DriI GACNNNNNGTC 1 cut(s) 188
Eam1105I GACNNNNNGTC 1 cut(s) 188
EciI GGCGGA 1 cut(s) 457
Eco24I GRGCYC 1 cut(s) 323
Eco47I GGWCC 1 cut(s) 529
Eco57I CTGAAG 1 cut(s) 45
EcoNI CCTNNNNNAGG 1 cut(s) 411
EcoRII CCWGG 1 cut(s) 412
EcoT38I GRGCYC 1 cut(s) 323
Esp3I CGTCTC 2 cut(s) 94, 196
FaiI YATR 4 cut(s) 35, 113, 306, 450
FalI AAGNNNNNCTT 2 cut(s) 260, 292
FaqI GGGAC 2 cut(s) 588, 598
Fnu4HI GCNGC 3 cut(s) 153, 178, 314
FokI GGATG 3 cut(s) 244, 367, 580
FriOI GRGCYC 1 cut(s) 323
Fsp4HI GCNGC 3 cut(s) 153, 178, 314
FspBI CTAG 1 cut(s) 51
GluI GCNGC 3 cut(s) 153, 178, 314
GsaI CCCAGC 1 cut(s) 320
HapII CCGG 1 cut(s) 296
HinfI GANTC 3 cut(s) 78, 183, 215
HpaII CCGG 1 cut(s) 296
HphI GGTGA 2 cut(s) 73, 242
Hpy166II GTNNAC 2 cut(s) 40, 515
Hpy188I TCNGA 2 cut(s) 77, 121
Hpy188III TCNNGA 5 cut(s) 51, 373, 394, 512, 532
Hpy8I GTNNAC 2 cut(s) 40, 515
Hpy99I CGWCG 1 cut(s) 244
HpyAV CCTTC 1 cut(s) 264
HpyCH4IV ACGT 1 cut(s) 97
HpyCH4V TGCA 3 cut(s) 180, 327, 507
HpyF3I CTNAG 2 cut(s) 173, 272
HpySE526I ACGT 1 cut(s) 97
Kzo9I GATC 2 cut(s) 121, 409
LmnI GCTCC 1 cut(s) 326
Lsp1109I GCAGC 3 cut(s) 164, 164, 300
MaeI CTAG 1 cut(s) 51
MaeII ACGT 1 cut(s) 97
MalI GATC 2 cut(s) 123, 411
MboI GATC 2 cut(s) 121, 409
MboII GAAGA 3 cut(s) 26, 37, 38
MflI RGATCY 1 cut(s) 121
MhlI GDGCHC 1 cut(s) 323
MluCI AATT 2 cut(s) 128, 359
MlyI GAGTC 1 cut(s) 177
MmeI TCCRAC 1 cut(s) 99
MnlI CCTC 6 cut(s) 94, 182, 197, 216, 508, 520
MroXI GAANNNNTTC 1 cut(s) 44
MseI TTAA 3 cut(s) 71, 425, 607
MslI CAYNNNNRTG 2 cut(s) 228, 598
MspA1I CMGCKG 1 cut(s) 177
MspI CCGG 1 cut(s) 296
MspR9I CCNGG 2 cut(s) 297, 414
Mva1269I GAATGC 1 cut(s) 507
MvaI CCWGG 1 cut(s) 414
NciI CCSGG 1 cut(s) 297
NdeII GATC 2 cut(s) 121, 409
NlaIV GGNNCC 3 cut(s) 123, 322, 377
OliI CACNNNNGTG 1 cut(s) 228
PcsI WCGNNNNNNNCGW 1 cut(s) 195
PctI GAATGC 1 cut(s) 507
PdmI GAANNNNTTC 1 cut(s) 44
PfeI GAWTC 2 cut(s) 78, 215
PflMI CCANNNNNTGG 1 cut(s) 386
PkrI GCNGC 3 cut(s) 154, 179, 315
PleI GAGTC 1 cut(s) 177
PpsI GAGTC 1 cut(s) 177
Psp6I CCWGG 1 cut(s) 412
PspFI CCCAGC 1 cut(s) 316
PspGI CCWGG 1 cut(s) 412
PspN4I GGNNCC 3 cut(s) 123, 322, 377
PspPI GGNCC 1 cut(s) 529
PstI CTGCAG 1 cut(s) 182
PsuI RGATCY 1 cut(s) 121
PvuII CAGCTG 1 cut(s) 177
RsaI GTAC 1 cut(s) 339
RsaNI GTAC 1 cut(s) 338
RseI CAYNNNNRTG 2 cut(s) 228, 598
SaqAI TTAA 3 cut(s) 71, 425, 607
SatI GCNGC 3 cut(s) 153, 178, 314
Sau3AI GATC 2 cut(s) 121, 409
Sau96I GGNCC 1 cut(s) 529
SchI GAGTC 1 cut(s) 177
ScrFI CCNGG 2 cut(s) 297, 414
SduI GDGCHC 1 cut(s) 323
SfcI CTRYAG 1 cut(s) 178
SinI GGWCC 1 cut(s) 529
SmiMI CAYNNNNRTG 2 cut(s) 228, 598
Sse9I AATT 2 cut(s) 128, 359
SsiI CCGC 2 cut(s) 300, 468
SspMI CTAG 1 cut(s) 51
StyD4I CCNGG 2 cut(s) 295, 412
TaiI ACGT 1 cut(s) 100
TaqI TCGA 1 cut(s) 213
TasI AATT 2 cut(s) 128, 359
TfiI GAWTC 2 cut(s) 78, 215
Tru1I TTAA 3 cut(s) 71, 425, 607
Tru9I TTAA 3 cut(s) 71, 425, 607
TscAI CASTG 1 cut(s) 605
TseI GCWGC 3 cut(s) 152, 177, 313
TspDTI ATGAA 1 cut(s) 246
TspGWI ACGGA 2 cut(s) 76, 250
TspRI CASTG 1 cut(s) 605
Van91I CCANNNNNTGG 1 cut(s) 386
VpaK11BI GGWCC 1 cut(s) 529
XagI CCTNNNNNAGG 1 cut(s) 411
XapI RAATTY 1 cut(s) 128
XbaI TCTAGA 1 cut(s) 50
XmnI GAANNNNTTC 1 cut(s) 44
XspI CTAG 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.