Rroxscaffold_153G00436690

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000153
OG0000082
Physical Location & Seq
Reverse (-)
239713 .. 242837
3125 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_153G00436690.1

Sequence Viewer

Length: 378 bp
ATGGTCTCTTTTGACTTGGCTGTGCAGGAGTTCCGGAGAATGCCACTGCCTACTTTCGACCATGATGGTAAGAGTTTCAGCTATCTTGGGGTTTGTGGAGGGTGCCTGTGTGTGTCGCGTATTCCGAAGGGTGCTTGTGACTCTATTGATCTCTGGGTCATGAAAGAATATGACGTGTGTGACTCGTGGTCTATGCTCTTTAGCTTAAAGCTCTCCCATCCGCCTGAGTTGCGCTTGCATTCCAGAGAATTCTTGGTTGTGGAAACTCGTACAGTGGTCGCGGATTGGACTGGCAAGGGGTTCGAGTTGATAAGGATTGATCATGCAGAAGACGATAAGCTTGGGTTGTATATGCTTAAGGGGGTTCGCATTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

125

Amino Acids

14.27

Weight (kDa)

5.75

Isoelectric Point (pI)

40.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000082)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17540 FvH4_1g17540 FvH4_1g17540 FvH4_1g17540 FvH4_1g17550 FvH4_1g17560 FvH4_1g17570 FvH4_1g17570 FvH4_1g17570 FvH4_1g17581 FvH4_1g18380 FvH4_1g18391 FvH4_1g18430 FvH4_1g18470 FvH4_1g18480 FvH4_1g18480 FvH4_1g18480 FvH4_1g18870 FvH4_2g36701 FvH4_2g36701 FvH4_2g36710 FvH4_2g36711 FvH4_3g01100 FvH4_3g01100 FvH4_3g14940 FvH4_3g14941 FvH4_3g14950 FvH4_3g14952 FvH4_3g14954 FvH4_3g14954 FvH4_3g14954 FvH4_3g15782 FvH4_3g32340 FvH4_3g32350 FvH4_3g32390 FvH4_3g32390 FvH4_3g44560 FvH4_3g44581 FvH4_3g44650 FvH4_3g44660 FvH4_3g44671 FvH4_3g45110 FvH4_3g45120 FvH4_3g45161 FvH4_4g30361 FvH4_6g14790 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14972 FvH4_6g14980 FvH4_6g14980 FvH4_6g14981 FvH4_6g14990 FvH4_6g14991 FvH4_6g14991 FvH4_6g14993 FvH4_6g14993 FvH4_6g14994 FvH4_6g15010 FvH4_6g19961
malus_domestica MD09G1138900.v1.1
prunus_persica Prupe.6G214500_v2.0.a1 Prupe.6G214600_v2.0.a1 Prupe.6G214700_v2.0.a1 Prupe.6G214900_v2.0.a1 Prupe.6G215100_v2.0.a1 Prupe.7G008100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321661 RchiOBHm_Chr1g0378141 RchiOBHm_Chr2g0101031 RchiOBHm_Chr2g0107781 RchiOBHm_Chr2g0107801 RchiOBHm_Chr2g0107811 RchiOBHm_Chr2g0107821 RchiOBHm_Chr2g0107841 RchiOBHm_Chr2g0107851 RchiOBHm_Chr2g0107881 RchiOBHm_Chr2g0107891 RchiOBHm_Chr2g0109731 RchiOBHm_Chr2g0109761 RchiOBHm_Chr2g0109771 RchiOBHm_Chr2g0109781 RchiOBHm_Chr3g0468171 RchiOBHm_Chr3g0468191 RchiOBHm_Chr3g0475411 RchiOBHm_Chr5g0007501 RchiOBHm_Chr5g0024531 RchiOBHm_Chr5g0053901 RchiOBHm_Chr5g0059111 RchiOBHm_Chr5g0059201 RchiOBHm_Chr5g0059211 RchiOBHm_Chr5g0059291 RchiOBHm_Chr5g0059301 RchiOBHm_Chr5g0059321 RchiOBHm_Chr5g0059551 RchiOBHm_Chr5g0081341 RchiOBHm_Chr7g0211081
rosa_laevigata RLG00000003023 RLG00000017039 RLG00000017135 RLG00000017616 RLG00000017620 RLG00000017621 RLG00000017622 RLG00000017623 RLG00000017624 RLG00000017625 RLG00000017762 RLG00000017763 RLG00000017764 RLG00000017765 RLG00000024443 RLG00000026103 RLG00000031462 RLG00000035283 RLG00000036923 RLG00000036924 RLG00000036925
rosa_multiflora Rmu_co7981142.1_g000001 Rmu_co8037462.1_g000001 Rmu_co8043938.1_g000001 Rmu_co8085092.1_g000001 Rmu_co8243479.1_g000002 Rmu_co8254857.1_g000001 Rmu_co8270991.1_g000001 Rmu_co8304467.1_g000001 Rmu_co8322247.1_g000001 Rmu_sc0000186.1_g000008 Rmu_sc0000375.1_g000022 Rmu_sc0000625.1_g000006 Rmu_sc0001465.1_g000001 Rmu_sc0001484.1_g000034 Rmu_sc0001484.1_g000035 Rmu_sc0001484.1_g000036 Rmu_sc0001484.1_g000038 Rmu_sc0001484.1_g000041 Rmu_sc0001484.1_g000042 Rmu_sc0001793.1_g000054 Rmu_sc0001810.1_g000002 Rmu_sc0001810.1_g000003 Rmu_sc0001810.1_g000004 Rmu_sc0001862.1_g000003 Rmu_sc0002076.1_g000008 Rmu_sc0002076.1_g000009 Rmu_sc0002983.1_g000017 Rmu_sc0002983.1_g000035 Rmu_sc0002983.1_g000038 Rmu_sc0003121.1_g000002 Rmu_sc0003121.1_g000005 Rmu_sc0003121.1_g000006 Rmu_sc0003121.1_g000007 Rmu_sc0003659.1_g000007 Rmu_sc0004524.1_g000009 Rmu_sc0004524.1_g000010 Rmu_sc0004524.1_g000012 Rmu_sc0004650.1_g000003 Rmu_sc0006215.1_g000003 Rmu_sc0006889.1_g000020 Rmu_sc0006889.1_g000030 Rmu_sc0006959.1_g000021 Rmu_sc0007173.1_g000008 Rmu_sc0007698.1_g000019 Rmu_sc0007768.1_g000009 Rmu_sc0008992.1_g000002 Rmu_sc0008992.1_g000004 Rmu_sc0009575.1_g000001 Rmu_sc0009575.1_g000008 Rmu_sc0009650.1_g000002 Rmu_sc0009650.1_g000005 Rmu_sc0009650.1_g000009 Rmu_sc0012421.1_g000005 Rmu_sc0012471.1_g000023 Rmu_sc0012471.1_g000025 Rmu_sc0012670.1_g000002 Rmu_sc0012670.1_g000003 Rmu_sc0016637.1_g000005 Rmu_sc0018174.1_g000002 Rmu_sc0031424.1_g000001 Rmu_ssc0000182.1_g000007 Rmu_ssc0000182.1_g000010 Rmu_ssc0000432.1_g000029 Rmu_ssc0000432.1_g000035 Rmu_ssc0000432.1_g000036 Rmu_ssc0000432.1_g000042
rosa_roxburghii Rroxscaffold_153G00436690 Rroxscaffold_1G00002200 Rroxscaffold_1G00002220 Rroxscaffold_1G00021160 Rroxscaffold_1G00021240 Rroxscaffold_1G00021310 Rroxscaffold_1G00025950 Rroxscaffold_1G00026710 Rroxscaffold_1G00054720 Rroxscaffold_2G00104770 Rroxscaffold_2G00104780 Rroxscaffold_2G00133820 Rroxscaffold_2G00133950 Rroxscaffold_2G00133970 Rroxscaffold_2G00133980 Rroxscaffold_2G00133990 Rroxscaffold_2G00135690 Rroxscaffold_2G00135820 Rroxscaffold_2G00135850 Rroxscaffold_2G00135860 Rroxscaffold_2G00135890 Rroxscaffold_2G00135910 Rroxscaffold_2G00135920 Rroxscaffold_2G00135930 Rroxscaffold_2G00135940 Rroxscaffold_2G00141620 Rroxscaffold_3G00248120 Rroxscaffold_4G00277310 Rroxscaffold_6G00406330 Rroxscaffold_6G00412930 Rroxscaffold_6G00412940 Rroxscaffold_6G00412950 Rroxscaffold_6G00412970 Rroxscaffold_6G00413290
rosa_rugosa Rorug01G0019000 Rorug02G0095500 Rorug02G0095600 Rorug02G0095700 Rorug02G0095800 Rorug02G0095900 Rorug02G0096000 Rorug02G0096100 Rorug02G0096200 Rorug02G0147500 Rorug02G0147600 Rorug02G0147700 Rorug02G0147800 Rorug02G0148100 Rorug02G0148300 Rorug02G0148400 Rorug02G0148500 Rorug02G0148600 Rorug02G0149800 Rorug02G0162500 Rorug02G0162600 Rorug02G0162700 Rorug02G0162800 Rorug02G0510300 Rorug03G0090600 Rorug03G0093700 Rorug03G0093800 Rorug03G0093900 Rorug03G0094000 Rorug03G0148600 Rorug04G0427700 Rorug05G0083700 Rorug05G0321200 Rorug05G0321300 Rorug05G0321400 Rorug05G0321500 Rorug05G0321600 Rorug05G0321900 Rorug05G0322000 Rorug05G0322000 Rorug05G0322300 Rorug05G0475400 Rorug05G0475500 Rorug05G0475600.1 Rorug05G0475700 Rorug05G0475900
rosa_samantha Rh1DG457400 Rh2AG197800 Rh2AG208800 Rh5AG386200 Rh5BG397600 Rh5DG174500 Rh5DG381100 Rh5DG414700 Rh5DG414800 Rh5DG415500 Rh5DG415800
rosa_wichuraiana Rw0G010830 Rw0G010840 Rw0G010870 Rw0G015860 Rw0G015870 Rw1G037410 Rw1G040530 Rw2G011200 Rw2G011230 Rw2G015590 Rw2G015600 Rw2G015610 Rw2G015630 Rw2G015640 Rw2G015660 Rw2G015680 Rw2G015690 Rw3G013400 Rw3G013410 Rw3G018040 Rw5G036340 Rw5G036390 Rw5G049010 Rw5G049020 Rw5G049030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 102
AccII CGCG 2 cut(s) 118, 281
AccIII TCCGGA 1 cut(s) 33
AciI CCGC 2 cut(s) 221, 281
AcsI RAATTY 1 cut(s) 248
AfaI GTAC 1 cut(s) 271
AflII CTTAAG 1 cut(s) 356
AflIII ACRYGT 1 cut(s) 174
AhdI GACNNNNNGTC 1 cut(s) 187
AjiI CACGTC 1 cut(s) 175
AluBI AGCT 4 cut(s) 81, 204, 211, 340
AluI AGCT 4 cut(s) 81, 204, 211, 340
Alw26I GTCTC 1 cut(s) 10
Aor13HI TCCGGA 1 cut(s) 33
ApoI RAATTY 1 cut(s) 248
AspLEI GCGC 1 cut(s) 234
BanI GGYRCC 1 cut(s) 102
BauI CACGAG 1 cut(s) 184
BbsI GAAGAC 1 cut(s) 336
BccI CCATC 2 cut(s) 59, 225
BcgI CGANNNNNNTGC 2 cut(s) 283, 317
BclI TGATCA 1 cut(s) 319
BcoDI GTCTC 1 cut(s) 10
BfrI CTTAAG 1 cut(s) 356
BmeRI GACNNNNNGTC 1 cut(s) 187
BmgBI CACGTC 1 cut(s) 175
BmiI GGNNCC 1 cut(s) 104
BpiI GAAGAC 1 cut(s) 336
BsaI GGTCTC 1 cut(s) 10
BsaWI WCCGGW 1 cut(s) 33
Bse1I ACTGG 1 cut(s) 295
BseAI TCCGGA 1 cut(s) 33
BseGI GGATG 1 cut(s) 217
BseMII CTCAG 1 cut(s) 216
BseNI ACTGG 1 cut(s) 295
BsgI GTGCAG 1 cut(s) 44
Bsh1236I CGCG 2 cut(s) 118, 281
BshNI GGYRCC 1 cut(s) 102
BsiSI CCGG 1 cut(s) 34
BsmAI GTCTC 1 cut(s) 10
BsmI GAATGC 2 cut(s) 45, 238
Bso31I GGTCTC 1 cut(s) 10
Bsp13I TCCGGA 1 cut(s) 33
Bsp143I GATC 2 cut(s) 148, 319
BspACI CCGC 2 cut(s) 221, 281
BspCNI CTCAG 1 cut(s) 217
BspEI TCCGGA 1 cut(s) 33
BspFNI CGCG 2 cut(s) 118, 281
BspHI TCATGA 1 cut(s) 159
BspLI GGNNCC 1 cut(s) 104
BspT107I GGYRCC 1 cut(s) 102
BspTI CTTAAG 1 cut(s) 356
BspTNI GGTCTC 1 cut(s) 10
BsrI ACTGG 1 cut(s) 295
BssMI GATC 2 cut(s) 148, 319
BssSI CACGAG 1 cut(s) 184
Bst2BI CACGAG 1 cut(s) 184
Bst4CI ACNGT 1 cut(s) 274
BstAFI CTTAAG 1 cut(s) 356
BstC8I GCNNGC 1 cut(s) 236
BstDEI CTNAG 1 cut(s) 225
BstF5I GGATG 1 cut(s) 217
BstFNI CGCG 2 cut(s) 118, 281
BstHHI GCGC 1 cut(s) 234
BstKTI GATC 2 cut(s) 151, 322
BstMAI GTCTC 1 cut(s) 10
BstMBI GATC 2 cut(s) 148, 319
BstMWI GCNNNNNNNGC 1 cut(s) 229
BstUI CGCG 2 cut(s) 118, 281
BstV2I GAAGAC 1 cut(s) 336
BtrI CACGTC 1 cut(s) 175
BtsCI GGATG 1 cut(s) 217
BtsI GCAGTG 1 cut(s) 44
BtsIMutI CAGTG 2 cut(s) 44, 279
Cac8I GCNNGC 1 cut(s) 236
CciI TCATGA 1 cut(s) 159
CfoI GCGC 1 cut(s) 234
Csp6I GTAC 1 cut(s) 270
CviAII CATG 3 cut(s) 62, 160, 323
CviJI RGCY 5 cut(s) 20, 81, 204, 211, 340
CviKI_1 RGCY 5 cut(s) 20, 81, 204, 211, 340
CviQI GTAC 1 cut(s) 270
DdeI CTNAG 1 cut(s) 225
DpnI GATC 2 cut(s) 150, 321
DpnII GATC 2 cut(s) 148, 319
DriI GACNNNNNGTC 1 cut(s) 187
Eam1105I GACNNNNNGTC 1 cut(s) 187
EciI GGCGGA 1 cut(s) 210
Eco31I GGTCTC 1 cut(s) 10
EcoRI GAATTC 1 cut(s) 248
FaeI CATG 3 cut(s) 65, 163, 326
FaiI YATR 8 cut(s) 63, 161, 171, 194, 324, 351, 353, 376
FatI CATG 3 cut(s) 61, 159, 322
FbaI TGATCA 1 cut(s) 319
FokI GGATG 1 cut(s) 204
GlaI GCGC 1 cut(s) 233
HapII CCGG 1 cut(s) 34
HhaI GCGC 1 cut(s) 234
Hin1II CATG 3 cut(s) 65, 163, 326
Hin6I GCGC 1 cut(s) 232
HinP1I GCGC 1 cut(s) 232
HindIII AAGCTT 1 cut(s) 338
HinfI GANTC 2 cut(s) 140, 182
HpaII CCGG 1 cut(s) 34
Hpy188I TCNGA 1 cut(s) 126
Hpy188III TCNNGA 3 cut(s) 34, 160, 243
HpyAV CCTTC 1 cut(s) 121
HpyCH4III ACNGT 1 cut(s) 274
HpyCH4IV ACGT 1 cut(s) 174
HpyCH4V TGCA 3 cut(s) 25, 238, 326
HpyF10VI GCNNNNNNNGC 1 cut(s) 229
HpyF3I CTNAG 1 cut(s) 225
HpySE526I ACGT 1 cut(s) 174
Hsp92II CATG 3 cut(s) 65, 163, 326
HspAI GCGC 1 cut(s) 232
Kpn2I TCCGGA 1 cut(s) 33
Ksp22I TGATCA 1 cut(s) 319
Kzo9I GATC 2 cut(s) 148, 319
LpnPI CCDG 7 cut(s) 11, 47, 119, 139, 237, 256, 276
MaeII ACGT 1 cut(s) 174
MaeIII GTNAC 2 cut(s) 137, 179
MalI GATC 2 cut(s) 150, 321
MboI GATC 2 cut(s) 148, 319
MboII GAAGA 1 cut(s) 341
MluCI AATT 1 cut(s) 248
MlyI GAGTC 2 cut(s) 134, 176
MnlI CCTC 1 cut(s) 92
MroI TCCGGA 1 cut(s) 33
MseI TTAA 2 cut(s) 206, 357
MspCI CTTAAG 1 cut(s) 356
MspI CCGG 1 cut(s) 34
Mva1269I GAATGC 2 cut(s) 45, 238
MvnI CGCG 2 cut(s) 118, 281
MwoI GCNNNNNNNGC 1 cut(s) 229
NdeII GATC 2 cut(s) 148, 319
NlaIII CATG 3 cut(s) 65, 163, 326
NlaIV GGNNCC 1 cut(s) 104
NmuCI GTSAC 2 cut(s) 137, 179
PagI TCATGA 1 cut(s) 159
PcsI WCGNNNNNNNCGW 1 cut(s) 122
PctI GAATGC 2 cut(s) 45, 238
PleI GAGTC 2 cut(s) 134, 176
PpsI GAGTC 2 cut(s) 134, 176
PspN4I GGNNCC 1 cut(s) 104
RsaI GTAC 1 cut(s) 271
RsaNI GTAC 1 cut(s) 270
SaqAI TTAA 2 cut(s) 206, 357
Sau3AI GATC 2 cut(s) 148, 319
SchI GAGTC 2 cut(s) 134, 176
SetI ASST 5 cut(s) 83, 177, 206, 213, 342
SmlI CTYRAG 1 cut(s) 356
SmoI CTYRAG 1 cut(s) 356
Sse9I AATT 1 cut(s) 248
SsiI CCGC 2 cut(s) 221, 281
TaaI ACNGT 1 cut(s) 274
TaiI ACGT 1 cut(s) 177
TaqI TCGA 2 cut(s) 57, 303
TasI AATT 1 cut(s) 248
Tru1I TTAA 2 cut(s) 206, 357
Tru9I TTAA 2 cut(s) 206, 357
TscAI CASTG 2 cut(s) 51, 279
TseFI GTSAC 2 cut(s) 137, 179
Tsp45I GTSAC 2 cut(s) 137, 179
TspDTI ATGAA 1 cut(s) 176
TspRI CASTG 2 cut(s) 51, 279
Vha464I CTTAAG 1 cut(s) 356
XapI RAATTY 1 cut(s) 248
XcmI CCANNNNNNNNNTGG 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.