Rroxscaffold_6G00413290

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000082
Physical Location & Seq
Reverse (-)
35682590 .. 35683096
507 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00413290.1

Sequence Viewer

Length: 507 bp
ATGTCCATAGCAATGAAATACCTCCCTCAAGATATTATAGAGCAAATCCTTTCCAGATTGCCCCTCAAATCTCTAATCCGATTGAGTTGCGTTTCCAAACAGTGGCGTACCATCGTCCTTGACCCACAATTTGCAACCCACCATTTGAGAGTCGCTTCCCAGCAGCACGGGCTCCTCATTTCCACCTCCTCTGAAATCAACTCCTTAGACTCGGAGACACCTTTTTTAGGTGACAATTCTCCGGTGAGAAACCTCGATTTCCGTTTCAAGAAGCCGGGCCAAAACGTCTTTCTACTGGTCTCGTGCAATGGTCTGGTATGTGTAGCTCTTGATTTTCATGCAAACTTTTACATCTGGAACCCCTCCACTGGTTACGCCAAGCCATTACCTGACCCGGGTTTCGAGCCACGAAGGATCGCAAGTCTTCGTTCTGGATTCGGTTATGTTTCGGCCACTGACGATTACAAACTTTTTGTAGCCGCTCGTTTTGATAACGACGATGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

168

Amino Acids

18.89

Weight (kDa)

7.74

Isoelectric Point (pI)

49.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 7 - 44 3.3e-11 F-box-like
F-box PF00646 8 - 44 3.8e-13 F-box domain
FBA_3 PF08268 67 - 160 1.5e-06 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000082)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17540 FvH4_1g17540 FvH4_1g17540 FvH4_1g17540 FvH4_1g17550 FvH4_1g17560 FvH4_1g17570 FvH4_1g17570 FvH4_1g17570 FvH4_1g17581 FvH4_1g18380 FvH4_1g18391 FvH4_1g18430 FvH4_1g18470 FvH4_1g18480 FvH4_1g18480 FvH4_1g18480 FvH4_1g18870 FvH4_2g36701 FvH4_2g36701 FvH4_2g36710 FvH4_2g36711 FvH4_3g01100 FvH4_3g01100 FvH4_3g14940 FvH4_3g14941 FvH4_3g14950 FvH4_3g14952 FvH4_3g14954 FvH4_3g14954 FvH4_3g14954 FvH4_3g15782 FvH4_3g32340 FvH4_3g32350 FvH4_3g32390 FvH4_3g32390 FvH4_3g44560 FvH4_3g44581 FvH4_3g44650 FvH4_3g44660 FvH4_3g44671 FvH4_3g45110 FvH4_3g45120 FvH4_3g45161 FvH4_4g30361 FvH4_6g14790 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14972 FvH4_6g14980 FvH4_6g14980 FvH4_6g14981 FvH4_6g14990 FvH4_6g14991 FvH4_6g14991 FvH4_6g14993 FvH4_6g14993 FvH4_6g14994 FvH4_6g15010 FvH4_6g19961
malus_domestica MD09G1138900.v1.1
prunus_persica Prupe.6G214500_v2.0.a1 Prupe.6G214600_v2.0.a1 Prupe.6G214700_v2.0.a1 Prupe.6G214900_v2.0.a1 Prupe.6G215100_v2.0.a1 Prupe.7G008100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321661 RchiOBHm_Chr1g0378141 RchiOBHm_Chr2g0101031 RchiOBHm_Chr2g0107781 RchiOBHm_Chr2g0107801 RchiOBHm_Chr2g0107811 RchiOBHm_Chr2g0107821 RchiOBHm_Chr2g0107841 RchiOBHm_Chr2g0107851 RchiOBHm_Chr2g0107881 RchiOBHm_Chr2g0107891 RchiOBHm_Chr2g0109731 RchiOBHm_Chr2g0109761 RchiOBHm_Chr2g0109771 RchiOBHm_Chr2g0109781 RchiOBHm_Chr3g0468171 RchiOBHm_Chr3g0468191 RchiOBHm_Chr3g0475411 RchiOBHm_Chr5g0007501 RchiOBHm_Chr5g0024531 RchiOBHm_Chr5g0053901 RchiOBHm_Chr5g0059111 RchiOBHm_Chr5g0059201 RchiOBHm_Chr5g0059211 RchiOBHm_Chr5g0059291 RchiOBHm_Chr5g0059301 RchiOBHm_Chr5g0059321 RchiOBHm_Chr5g0059551 RchiOBHm_Chr5g0081341 RchiOBHm_Chr7g0211081
rosa_laevigata RLG00000003023 RLG00000017039 RLG00000017135 RLG00000017616 RLG00000017620 RLG00000017621 RLG00000017622 RLG00000017623 RLG00000017624 RLG00000017625 RLG00000017762 RLG00000017763 RLG00000017764 RLG00000017765 RLG00000024443 RLG00000026103 RLG00000031462 RLG00000035283 RLG00000036923 RLG00000036924 RLG00000036925
rosa_multiflora Rmu_co7981142.1_g000001 Rmu_co8037462.1_g000001 Rmu_co8043938.1_g000001 Rmu_co8085092.1_g000001 Rmu_co8243479.1_g000002 Rmu_co8254857.1_g000001 Rmu_co8270991.1_g000001 Rmu_co8304467.1_g000001 Rmu_co8322247.1_g000001 Rmu_sc0000186.1_g000008 Rmu_sc0000375.1_g000022 Rmu_sc0000625.1_g000006 Rmu_sc0001465.1_g000001 Rmu_sc0001484.1_g000034 Rmu_sc0001484.1_g000035 Rmu_sc0001484.1_g000036 Rmu_sc0001484.1_g000038 Rmu_sc0001484.1_g000041 Rmu_sc0001484.1_g000042 Rmu_sc0001793.1_g000054 Rmu_sc0001810.1_g000002 Rmu_sc0001810.1_g000003 Rmu_sc0001810.1_g000004 Rmu_sc0001862.1_g000003 Rmu_sc0002076.1_g000008 Rmu_sc0002076.1_g000009 Rmu_sc0002983.1_g000017 Rmu_sc0002983.1_g000035 Rmu_sc0002983.1_g000038 Rmu_sc0003121.1_g000002 Rmu_sc0003121.1_g000005 Rmu_sc0003121.1_g000006 Rmu_sc0003121.1_g000007 Rmu_sc0003659.1_g000007 Rmu_sc0004524.1_g000009 Rmu_sc0004524.1_g000010 Rmu_sc0004524.1_g000012 Rmu_sc0004650.1_g000003 Rmu_sc0006215.1_g000003 Rmu_sc0006889.1_g000020 Rmu_sc0006889.1_g000030 Rmu_sc0006959.1_g000021 Rmu_sc0007173.1_g000008 Rmu_sc0007698.1_g000019 Rmu_sc0007768.1_g000009 Rmu_sc0008992.1_g000002 Rmu_sc0008992.1_g000004 Rmu_sc0009575.1_g000001 Rmu_sc0009575.1_g000008 Rmu_sc0009650.1_g000002 Rmu_sc0009650.1_g000005 Rmu_sc0009650.1_g000009 Rmu_sc0012421.1_g000005 Rmu_sc0012471.1_g000023 Rmu_sc0012471.1_g000025 Rmu_sc0012670.1_g000002 Rmu_sc0012670.1_g000003 Rmu_sc0016637.1_g000005 Rmu_sc0018174.1_g000002 Rmu_sc0031424.1_g000001 Rmu_ssc0000182.1_g000007 Rmu_ssc0000182.1_g000010 Rmu_ssc0000432.1_g000029 Rmu_ssc0000432.1_g000035 Rmu_ssc0000432.1_g000036 Rmu_ssc0000432.1_g000042
rosa_roxburghii Rroxscaffold_153G00436690 Rroxscaffold_1G00002200 Rroxscaffold_1G00002220 Rroxscaffold_1G00021160 Rroxscaffold_1G00021240 Rroxscaffold_1G00021310 Rroxscaffold_1G00025950 Rroxscaffold_1G00026710 Rroxscaffold_1G00054720 Rroxscaffold_2G00104770 Rroxscaffold_2G00104780 Rroxscaffold_2G00133820 Rroxscaffold_2G00133950 Rroxscaffold_2G00133970 Rroxscaffold_2G00133980 Rroxscaffold_2G00133990 Rroxscaffold_2G00135690 Rroxscaffold_2G00135820 Rroxscaffold_2G00135850 Rroxscaffold_2G00135860 Rroxscaffold_2G00135890 Rroxscaffold_2G00135910 Rroxscaffold_2G00135920 Rroxscaffold_2G00135930 Rroxscaffold_2G00135940 Rroxscaffold_2G00141620 Rroxscaffold_3G00248120 Rroxscaffold_4G00277310 Rroxscaffold_6G00406330 Rroxscaffold_6G00412930 Rroxscaffold_6G00412940 Rroxscaffold_6G00412950 Rroxscaffold_6G00412970 Rroxscaffold_6G00413290
rosa_rugosa Rorug01G0019000 Rorug02G0095500 Rorug02G0095600 Rorug02G0095700 Rorug02G0095800 Rorug02G0095900 Rorug02G0096000 Rorug02G0096100 Rorug02G0096200 Rorug02G0147500 Rorug02G0147600 Rorug02G0147700 Rorug02G0147800 Rorug02G0148100 Rorug02G0148300 Rorug02G0148400 Rorug02G0148500 Rorug02G0148600 Rorug02G0149800 Rorug02G0162500 Rorug02G0162600 Rorug02G0162700 Rorug02G0162800 Rorug02G0510300 Rorug03G0090600 Rorug03G0093700 Rorug03G0093800 Rorug03G0093900 Rorug03G0094000 Rorug03G0148600 Rorug04G0427700 Rorug05G0083700 Rorug05G0321200 Rorug05G0321300 Rorug05G0321400 Rorug05G0321500 Rorug05G0321600 Rorug05G0321900 Rorug05G0322000 Rorug05G0322000 Rorug05G0322300 Rorug05G0475400 Rorug05G0475500 Rorug05G0475600.1 Rorug05G0475700 Rorug05G0475900
rosa_samantha Rh1DG457400 Rh2AG197800 Rh2AG208800 Rh5AG386200 Rh5BG397600 Rh5DG174500 Rh5DG381100 Rh5DG414700 Rh5DG414800 Rh5DG415500 Rh5DG415800
rosa_wichuraiana Rw0G010830 Rw0G010840 Rw0G010870 Rw0G015860 Rw0G015870 Rw1G037410 Rw1G040530 Rw2G011200 Rw2G011230 Rw2G015590 Rw2G015600 Rw2G015610 Rw2G015630 Rw2G015640 Rw2G015660 Rw2G015680 Rw2G015690 Rw3G013400 Rw3G013410 Rw3G018040 Rw5G036340 Rw5G036390 Rw5G049010 Rw5G049020 Rw5G049030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 102
AccBSI CCGCTC 1 cut(s) 482
AciI CCGC 1 cut(s) 480
AclWI GGATC 1 cut(s) 422
AcoI YGGCCR 1 cut(s) 450
AfaI GTAC 1 cut(s) 109
AfiI CCNNNNNNNGG 4 cut(s) 102, 227, 368, 395
AgsI TTSAA 1 cut(s) 268
AjuI GAANNNNNNNTTGG 2 cut(s) 273, 305
AluBI AGCT 1 cut(s) 326
AluI AGCT 1 cut(s) 326
Alw26I GTCTC 2 cut(s) 209, 304
AlwI GGATC 1 cut(s) 422
Ama87I CYCGRG 1 cut(s) 394
AoxI GGCC 2 cut(s) 277, 450
ApeKI GCWGC 1 cut(s) 163
ArsI GACNNNNNNTTYG 4 cut(s) 113, 145, 383, 415
AspS9I GGNCC 1 cut(s) 277
AsuC2I CCSGG 3 cut(s) 276, 395, 396
AsuHPI GGTGA 2 cut(s) 242, 256
AvaI CYCGRG 1 cut(s) 394
BanII GRGCYC 1 cut(s) 174
BauI CACGAG 1 cut(s) 301
BbsI GAAGAC 1 cut(s) 416
BbvI GCAGC 1 cut(s) 175
BccI CCATC 1 cut(s) 119
BcgI CGANNNNNNTGC 2 cut(s) 69, 103
BcnI CCSGG 3 cut(s) 276, 395, 396
BcoDI GTCTC 2 cut(s) 209, 304
BisI GCNGC 2 cut(s) 164, 480
BlsI GCNGC 2 cut(s) 165, 481
Bme1390I CCNGG 3 cut(s) 276, 395, 396
BmeT110I CYCGRG 1 cut(s) 394
BmgT120I GGNCC 1 cut(s) 277
BmiI GGNNCC 2 cut(s) 173, 359
BmrFI CCNGG 3 cut(s) 276, 395, 396
BmsI GCATC 1 cut(s) 490
BpiI GAAGAC 1 cut(s) 416
BpuEI CTTGAG 1 cut(s) 12
BpuMI CCSGG 3 cut(s) 276, 395, 396
BsaI GGTCTC 1 cut(s) 304
BsaJI CCNNGG 1 cut(s) 394
BsaWI WCCGGW 1 cut(s) 241
Bsc4I CCNNNNNNNGG 4 cut(s) 102, 227, 368, 395
Bse1I ACTGG 2 cut(s) 300, 373
Bse3DI GCAATG 2 cut(s) 18, 313
BseDI CCNNGG 1 cut(s) 394
BseLI CCNNNNNNNGG 4 cut(s) 102, 227, 368, 395
BseMI GCAATG 2 cut(s) 18, 313
BseNI ACTGG 2 cut(s) 300, 373
BseRI GAGGAG 2 cut(s) 164, 178
BseXI GCAGC 1 cut(s) 175
BseYI CCCAGC 1 cut(s) 159
BshFI GGCC 2 cut(s) 279, 452
BsiHKCI CYCGRG 1 cut(s) 394
BsiSI CCGG 3 cut(s) 242, 275, 395
BslI CCNNNNNNNGG 4 cut(s) 102, 227, 368, 395
BsmAI GTCTC 2 cut(s) 209, 304
BsnI GGCC 2 cut(s) 279, 452
Bso31I GGTCTC 1 cut(s) 304
BsoBI CYCGRG 1 cut(s) 394
Bsp1286I GDGCHC 1 cut(s) 174
Bsp143I GATC 1 cut(s) 414
BspACI CCGC 1 cut(s) 480
BspANI GGCC 2 cut(s) 279, 452
BspLI GGNNCC 2 cut(s) 173, 359
BspPI GGATC 1 cut(s) 422
BspTNI GGTCTC 1 cut(s) 304
BsrBI CCGCTC 1 cut(s) 482
BsrDI GCAATG 2 cut(s) 18, 313
BsrI ACTGG 2 cut(s) 300, 373
BssECI CCNNGG 1 cut(s) 394
BssMI GATC 1 cut(s) 414
BssSI CACGAG 1 cut(s) 301
Bst2BI CACGAG 1 cut(s) 301
Bst4CI ACNGT 1 cut(s) 102
BstDEI CTNAG 1 cut(s) 205
BstENI CCTNNNNNAGG 1 cut(s) 225
BstKTI GATC 1 cut(s) 417
BstMAI GTCTC 2 cut(s) 209, 304
BstMBI GATC 1 cut(s) 414
BstMWI GCNNNNNNNGC 1 cut(s) 169
BstSCI CCNGG 3 cut(s) 274, 393, 394
BstV1I GCAGC 1 cut(s) 175
BstV2I GAAGAC 1 cut(s) 416
BsuRI GGCC 2 cut(s) 279, 452
BtsIMutI CAGTG 3 cut(s) 107, 366, 453
Cfr13I GGNCC 1 cut(s) 277
Cfr9I CCCGGG 1 cut(s) 394
Csp6I GTAC 1 cut(s) 108
CviAII CATG 2 cut(s) 338, 504
CviJI RGCY 8 cut(s) 172, 274, 279, 326, 382, 406, 452, 479
CviKI_1 RGCY 8 cut(s) 172, 274, 279, 326, 382, 406, 452, 479
CviQI GTAC 1 cut(s) 108
DdeI CTNAG 1 cut(s) 205
DpnI GATC 1 cut(s) 416
DpnII GATC 1 cut(s) 414
EaeI YGGCCR 1 cut(s) 450
Eco24I GRGCYC 1 cut(s) 174
Eco31I GGTCTC 1 cut(s) 304
Eco88I CYCGRG 1 cut(s) 394
EcoNI CCTNNNNNAGG 1 cut(s) 225
EcoT22I ATGCAT 1 cut(s) 505
EcoT38I GRGCYC 1 cut(s) 174
FaeI CATG 2 cut(s) 341, 507
FaiI YATR 6 cut(s) 8, 38, 319, 339, 444, 505
FatI CATG 2 cut(s) 337, 503
Fnu4HI GCNGC 2 cut(s) 164, 480
FriOI GRGCYC 1 cut(s) 174
Fsp4HI GCNGC 2 cut(s) 164, 480
GluI GCNGC 2 cut(s) 164, 480
GsaI CCCAGC 1 cut(s) 163
HaeIII GGCC 2 cut(s) 279, 452
HapII CCGG 3 cut(s) 242, 275, 395
Hin1II CATG 2 cut(s) 341, 507
HinfI GANTC 3 cut(s) 150, 209, 435
HpaII CCGG 3 cut(s) 242, 275, 395
HphI GGTGA 2 cut(s) 242, 256
Hpy188I TCNGA 3 cut(s) 80, 193, 214
Hpy188III TCNNGA 6 cut(s) 29, 54, 268, 329, 355, 432
Hpy99I CGWCG 1 cut(s) 500
HpyAV CCTTC 1 cut(s) 405
HpyCH4III ACNGT 1 cut(s) 102
HpyCH4IV ACGT 1 cut(s) 285
HpyCH4V TGCA 4 cut(s) 134, 306, 341, 503
HpyF10VI GCNNNNNNNGC 1 cut(s) 169
HpyF3I CTNAG 1 cut(s) 205
HpySE526I ACGT 1 cut(s) 285
Hsp92II CATG 2 cut(s) 341, 507
Kzo9I GATC 1 cut(s) 414
LmnI GCTCC 1 cut(s) 177
Lsp1109I GCAGC 1 cut(s) 175
LweI GCATC 1 cut(s) 490
MaeII ACGT 1 cut(s) 285
MaeIII GTNAC 2 cut(s) 230, 371
MalI GATC 1 cut(s) 416
MbiI CCGCTC 1 cut(s) 482
MboI GATC 1 cut(s) 414
MboII GAAGA 1 cut(s) 416
MhlI GDGCHC 1 cut(s) 174
MluCI AATT 2 cut(s) 128, 235
MlyI GAGTC 2 cut(s) 159, 203
MnlI CCTC 8 cut(s) 32, 36, 74, 185, 196, 199, 263, 373
Mph1103I ATGCAT 1 cut(s) 505
MslI CAYNNNNRTG 1 cut(s) 11
MspI CCGG 3 cut(s) 242, 275, 395
MspR9I CCNGG 3 cut(s) 276, 395, 396
MwoI GCNNNNNNNGC 1 cut(s) 169
NciI CCSGG 3 cut(s) 276, 395, 396
NdeII GATC 1 cut(s) 414
NlaIII CATG 2 cut(s) 341, 507
NlaIV GGNNCC 2 cut(s) 173, 359
NmuCI GTSAC 1 cut(s) 230
NsiI ATGCAT 1 cut(s) 505
PfeI GAWTC 1 cut(s) 435
PflMI CCANNNNNTGG 1 cut(s) 102
PkrI GCNGC 2 cut(s) 165, 481
PleI GAGTC 2 cut(s) 158, 203
PpsI GAGTC 2 cut(s) 158, 203
PspFI CCCAGC 1 cut(s) 159
PspN4I GGNNCC 2 cut(s) 173, 359
PspPI GGNCC 1 cut(s) 277
RsaI GTAC 1 cut(s) 109
RsaNI GTAC 1 cut(s) 108
RseI CAYNNNNRTG 1 cut(s) 11
SatI GCNGC 2 cut(s) 164, 480
Sau3AI GATC 1 cut(s) 414
Sau96I GGNCC 1 cut(s) 277
SchI GAGTC 2 cut(s) 159, 203
ScrFI CCNGG 3 cut(s) 276, 395, 396
SduI GDGCHC 1 cut(s) 174
SetI ASST 8 cut(s) 24, 188, 223, 232, 255, 288, 328, 391
SfaNI GCATC 1 cut(s) 490
SmaI CCCGGG 1 cut(s) 396
SmiMI CAYNNNNRTG 1 cut(s) 11
SmlI CTYRAG 1 cut(s) 27
SmoI CTYRAG 1 cut(s) 27
Sse9I AATT 2 cut(s) 128, 235
SsiI CCGC 1 cut(s) 480
StyD4I CCNGG 3 cut(s) 274, 393, 394
TaaI ACNGT 1 cut(s) 102
TaiI ACGT 1 cut(s) 288
TaqI TCGA 2 cut(s) 255, 402
TasI AATT 2 cut(s) 128, 235
TauI GCSGC 1 cut(s) 482
TfiI GAWTC 1 cut(s) 435
TscAI CASTG 3 cut(s) 107, 373, 460
TseFI GTSAC 1 cut(s) 230
TseI GCWGC 1 cut(s) 163
Tsp45I GTSAC 1 cut(s) 230
TspDTI ATGAA 2 cut(s) 29, 326
TspGWI ACGGA 1 cut(s) 251
TspMI CCCGGG 1 cut(s) 394
TspRI CASTG 3 cut(s) 107, 373, 460
Van91I CCANNNNNTGG 1 cut(s) 102
XagI CCTNNNNNAGG 1 cut(s) 225
XmaI CCCGGG 1 cut(s) 394
Zsp2I ATGCAT 1 cut(s) 505
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.