Rorug05G0475700

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
65343176 .. 65343469
294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0475700.1

Sequence Viewer

Length: 294 bp
ATGGAAGCTATCGAAGAAGGAAAGCAGTTCTTCTTCCAAGTTTGCCTTCACGAGAAGCTCTTCCACAAGAAGCACATCCTCCAACGCTCCACTTCTTTCAAGAAGCTATTCCCAGAAAAGCAGCGTCTCTTCCAGTTCCAACTCCAAGTGCCCTCCTCTTCCCCGGAGCTTCTCGCAAAAGAACTCTTCCATAAGCCGAAAGTGCAGCAGCCTCGCCAAGGAACACAAGGCCAGATTTTACATCATGAGGAGATGTGTGGCTATGCTTGTTTGTTGGCACAAGCATGGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

97

Amino Acids

11.49

Weight (kDa)

9.3

Isoelectric Point (pI)

73.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000082)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17540 FvH4_1g17540 FvH4_1g17540 FvH4_1g17540 FvH4_1g17550 FvH4_1g17560 FvH4_1g17570 FvH4_1g17570 FvH4_1g17570 FvH4_1g17581 FvH4_1g18380 FvH4_1g18391 FvH4_1g18430 FvH4_1g18470 FvH4_1g18480 FvH4_1g18480 FvH4_1g18480 FvH4_1g18870 FvH4_2g36701 FvH4_2g36701 FvH4_2g36710 FvH4_2g36711 FvH4_3g01100 FvH4_3g01100 FvH4_3g14940 FvH4_3g14941 FvH4_3g14950 FvH4_3g14952 FvH4_3g14954 FvH4_3g14954 FvH4_3g14954 FvH4_3g15782 FvH4_3g32340 FvH4_3g32350 FvH4_3g32390 FvH4_3g32390 FvH4_3g44560 FvH4_3g44581 FvH4_3g44650 FvH4_3g44660 FvH4_3g44671 FvH4_3g45110 FvH4_3g45120 FvH4_3g45161 FvH4_4g30361 FvH4_6g14790 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14972 FvH4_6g14980 FvH4_6g14980 FvH4_6g14981 FvH4_6g14990 FvH4_6g14991 FvH4_6g14991 FvH4_6g14993 FvH4_6g14993 FvH4_6g14994 FvH4_6g15010 FvH4_6g19961
malus_domestica MD09G1138900.v1.1
prunus_persica Prupe.6G214500_v2.0.a1 Prupe.6G214600_v2.0.a1 Prupe.6G214700_v2.0.a1 Prupe.6G214900_v2.0.a1 Prupe.6G215100_v2.0.a1 Prupe.7G008100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321661 RchiOBHm_Chr1g0378141 RchiOBHm_Chr2g0101031 RchiOBHm_Chr2g0107781 RchiOBHm_Chr2g0107801 RchiOBHm_Chr2g0107811 RchiOBHm_Chr2g0107821 RchiOBHm_Chr2g0107841 RchiOBHm_Chr2g0107851 RchiOBHm_Chr2g0107881 RchiOBHm_Chr2g0107891 RchiOBHm_Chr2g0109731 RchiOBHm_Chr2g0109761 RchiOBHm_Chr2g0109771 RchiOBHm_Chr2g0109781 RchiOBHm_Chr3g0468171 RchiOBHm_Chr3g0468191 RchiOBHm_Chr3g0475411 RchiOBHm_Chr5g0007501 RchiOBHm_Chr5g0024531 RchiOBHm_Chr5g0053901 RchiOBHm_Chr5g0059111 RchiOBHm_Chr5g0059201 RchiOBHm_Chr5g0059211 RchiOBHm_Chr5g0059291 RchiOBHm_Chr5g0059301 RchiOBHm_Chr5g0059321 RchiOBHm_Chr5g0059551 RchiOBHm_Chr5g0081341 RchiOBHm_Chr7g0211081
rosa_laevigata RLG00000003023 RLG00000017039 RLG00000017135 RLG00000017616 RLG00000017620 RLG00000017621 RLG00000017622 RLG00000017623 RLG00000017624 RLG00000017625 RLG00000017762 RLG00000017763 RLG00000017764 RLG00000017765 RLG00000024443 RLG00000026103 RLG00000031462 RLG00000035283 RLG00000036923 RLG00000036924 RLG00000036925
rosa_multiflora Rmu_co7981142.1_g000001 Rmu_co8037462.1_g000001 Rmu_co8043938.1_g000001 Rmu_co8085092.1_g000001 Rmu_co8243479.1_g000002 Rmu_co8254857.1_g000001 Rmu_co8270991.1_g000001 Rmu_co8304467.1_g000001 Rmu_co8322247.1_g000001 Rmu_sc0000186.1_g000008 Rmu_sc0000375.1_g000022 Rmu_sc0000625.1_g000006 Rmu_sc0001465.1_g000001 Rmu_sc0001484.1_g000034 Rmu_sc0001484.1_g000035 Rmu_sc0001484.1_g000036 Rmu_sc0001484.1_g000038 Rmu_sc0001484.1_g000041 Rmu_sc0001484.1_g000042 Rmu_sc0001793.1_g000054 Rmu_sc0001810.1_g000002 Rmu_sc0001810.1_g000003 Rmu_sc0001810.1_g000004 Rmu_sc0001862.1_g000003 Rmu_sc0002076.1_g000008 Rmu_sc0002076.1_g000009 Rmu_sc0002983.1_g000017 Rmu_sc0002983.1_g000035 Rmu_sc0002983.1_g000038 Rmu_sc0003121.1_g000002 Rmu_sc0003121.1_g000005 Rmu_sc0003121.1_g000006 Rmu_sc0003121.1_g000007 Rmu_sc0003659.1_g000007 Rmu_sc0004524.1_g000009 Rmu_sc0004524.1_g000010 Rmu_sc0004524.1_g000012 Rmu_sc0004650.1_g000003 Rmu_sc0006215.1_g000003 Rmu_sc0006889.1_g000020 Rmu_sc0006889.1_g000030 Rmu_sc0006959.1_g000021 Rmu_sc0007173.1_g000008 Rmu_sc0007698.1_g000019 Rmu_sc0007768.1_g000009 Rmu_sc0008992.1_g000002 Rmu_sc0008992.1_g000004 Rmu_sc0009575.1_g000001 Rmu_sc0009575.1_g000008 Rmu_sc0009650.1_g000002 Rmu_sc0009650.1_g000005 Rmu_sc0009650.1_g000009 Rmu_sc0012421.1_g000005 Rmu_sc0012471.1_g000023 Rmu_sc0012471.1_g000025 Rmu_sc0012670.1_g000002 Rmu_sc0012670.1_g000003 Rmu_sc0016637.1_g000005 Rmu_sc0018174.1_g000002 Rmu_sc0031424.1_g000001 Rmu_ssc0000182.1_g000007 Rmu_ssc0000182.1_g000010 Rmu_ssc0000432.1_g000029 Rmu_ssc0000432.1_g000035 Rmu_ssc0000432.1_g000036 Rmu_ssc0000432.1_g000042
rosa_roxburghii Rroxscaffold_153G00436690 Rroxscaffold_1G00002200 Rroxscaffold_1G00002220 Rroxscaffold_1G00021160 Rroxscaffold_1G00021240 Rroxscaffold_1G00021310 Rroxscaffold_1G00025950 Rroxscaffold_1G00026710 Rroxscaffold_1G00054720 Rroxscaffold_2G00104770 Rroxscaffold_2G00104780 Rroxscaffold_2G00133820 Rroxscaffold_2G00133950 Rroxscaffold_2G00133970 Rroxscaffold_2G00133980 Rroxscaffold_2G00133990 Rroxscaffold_2G00135690 Rroxscaffold_2G00135820 Rroxscaffold_2G00135850 Rroxscaffold_2G00135860 Rroxscaffold_2G00135890 Rroxscaffold_2G00135910 Rroxscaffold_2G00135920 Rroxscaffold_2G00135930 Rroxscaffold_2G00135940 Rroxscaffold_2G00141620 Rroxscaffold_3G00248120 Rroxscaffold_4G00277310 Rroxscaffold_6G00406330 Rroxscaffold_6G00412930 Rroxscaffold_6G00412940 Rroxscaffold_6G00412950 Rroxscaffold_6G00412970 Rroxscaffold_6G00413290
rosa_rugosa Rorug01G0019000 Rorug02G0095500 Rorug02G0095600 Rorug02G0095700 Rorug02G0095800 Rorug02G0095900 Rorug02G0096000 Rorug02G0096100 Rorug02G0096200 Rorug02G0147500 Rorug02G0147600 Rorug02G0147700 Rorug02G0147800 Rorug02G0148100 Rorug02G0148300 Rorug02G0148400 Rorug02G0148500 Rorug02G0148600 Rorug02G0149800 Rorug02G0162500 Rorug02G0162600 Rorug02G0162700 Rorug02G0162800 Rorug02G0510300 Rorug03G0090600 Rorug03G0093700 Rorug03G0093800 Rorug03G0093900 Rorug03G0094000 Rorug03G0148600 Rorug04G0427700 Rorug05G0083700 Rorug05G0321200 Rorug05G0321300 Rorug05G0321400 Rorug05G0321500 Rorug05G0321600 Rorug05G0321900 Rorug05G0322000 Rorug05G0322000 Rorug05G0322300 Rorug05G0475400 Rorug05G0475500 Rorug05G0475600.1 Rorug05G0475700 Rorug05G0475900
rosa_samantha Rh1DG457400 Rh2AG197800 Rh2AG208800 Rh5AG386200 Rh5BG397600 Rh5DG174500 Rh5DG381100 Rh5DG414700 Rh5DG414800 Rh5DG415500 Rh5DG415800
rosa_wichuraiana Rw0G010830 Rw0G010840 Rw0G010870 Rw0G015860 Rw0G015870 Rw1G037410 Rw1G040530 Rw2G011200 Rw2G011230 Rw2G015590 Rw2G015600 Rw2G015610 Rw2G015630 Rw2G015640 Rw2G015660 Rw2G015680 Rw2G015690 Rw3G013400 Rw3G013410 Rw3G018040 Rw5G036340 Rw5G036390 Rw5G049010 Rw5G049020 Rw5G049030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 218
AgsI TTSAA 1 cut(s) 100
AjuI GAANNNNNNNTTGG 2 cut(s) 30, 62
AluBI AGCT 4 cut(s) 8, 58, 106, 169
AluI AGCT 4 cut(s) 8, 58, 106, 169
Alw26I GTCTC 1 cut(s) 131
AoxI GGCC 1 cut(s) 229
ApeKI GCWGC 3 cut(s) 121, 205, 208
Asp700I GAANNNNTTC 2 cut(s) 59, 107
AsuC2I CCSGG 1 cut(s) 164
BaeGI GKGCMC 1 cut(s) 153
BauI CACGAG 1 cut(s) 50
BbvI GCAGC 3 cut(s) 133, 217, 220
BcgI CGANNNNNNTGC 2 cut(s) 194, 228
BcnI CCSGG 1 cut(s) 164
BcoDI GTCTC 1 cut(s) 131
BisI GCNGC 3 cut(s) 122, 206, 209
BlsI GCNGC 3 cut(s) 123, 207, 210
Bme1390I CCNGG 1 cut(s) 164
BmrFI CCNGG 1 cut(s) 164
BpuMI CCSGG 1 cut(s) 164
BsaJI CCNNGG 2 cut(s) 162, 217
Bsc4I CCNNNNNNNGG 1 cut(s) 218
Bse1I ACTGG 1 cut(s) 133
BseDI CCNNGG 2 cut(s) 162, 217
BseGI GGATG 1 cut(s) 75
BseLI CCNNNNNNNGG 1 cut(s) 218
BseNI ACTGG 1 cut(s) 133
BseRI GAGGAG 2 cut(s) 145, 263
BseSI GKGCMC 1 cut(s) 153
BseXI GCAGC 3 cut(s) 133, 217, 220
BsgI GTGCAG 1 cut(s) 224
BshFI GGCC 1 cut(s) 231
BsiSI CCGG 1 cut(s) 164
BslI CCNNNNNNNGG 1 cut(s) 218
BsmAI GTCTC 1 cut(s) 131
BsmBI CGTCTC 1 cut(s) 131
BsnI GGCC 1 cut(s) 231
Bsp1286I GDGCHC 1 cut(s) 153
BspANI GGCC 1 cut(s) 231
BspHI TCATGA 1 cut(s) 244
BspQI GCTCTTC 1 cut(s) 65
BsrI ACTGG 1 cut(s) 133
BssECI CCNNGG 2 cut(s) 162, 217
BssSI CACGAG 1 cut(s) 50
BssT1I CCWWGG 1 cut(s) 217
Bst2BI CACGAG 1 cut(s) 50
Bst6I CTCTTC 4 cut(s) 65, 134, 163, 191
BstENI CCTNNNNNAGG 1 cut(s) 216
BstF5I GGATG 1 cut(s) 75
BstMAI GTCTC 1 cut(s) 131
BstMWI GCNNNNNNNGC 1 cut(s) 202
BstSCI CCNGG 1 cut(s) 162
BstSLI GKGCMC 1 cut(s) 153
BstV1I GCAGC 3 cut(s) 133, 217, 220
BsuRI GGCC 1 cut(s) 231
BtsCI GGATG 1 cut(s) 75
CciI TCATGA 1 cut(s) 244
CseI GACGC 1 cut(s) 113
CviAII CATG 2 cut(s) 245, 285
CviJI RGCY 8 cut(s) 8, 58, 106, 169, 196, 211, 231, 261
CviKI_1 RGCY 8 cut(s) 8, 58, 106, 169, 196, 211, 231, 261
Eam1104I CTCTTC 4 cut(s) 65, 134, 163, 191
EarI CTCTTC 4 cut(s) 65, 134, 163, 191
Eco130I CCWWGG 1 cut(s) 217
EcoNI CCTNNNNNAGG 1 cut(s) 216
EcoT14I CCWWGG 1 cut(s) 217
ErhI CCWWGG 1 cut(s) 217
Esp3I CGTCTC 1 cut(s) 131
FaeI CATG 2 cut(s) 248, 288
FaiI YATR 4 cut(s) 192, 246, 264, 286
FalI AAGNNNNNCTT 4 cut(s) 14, 46, 30, 62
FatI CATG 2 cut(s) 244, 284
Fnu4HI GCNGC 3 cut(s) 122, 206, 209
FokI GGATG 1 cut(s) 62
Fsp4HI GCNGC 3 cut(s) 122, 206, 209
GluI GCNGC 3 cut(s) 122, 206, 209
HaeIII GGCC 1 cut(s) 231
HapII CCGG 1 cut(s) 164
HgaI GACGC 1 cut(s) 113
Hin1II CATG 2 cut(s) 248, 288
HpaII CCGG 1 cut(s) 164
Hpy188III TCNNGA 3 cut(s) 50, 100, 245
HpyAV CCTTC 2 cut(s) 11, 56
HpyCH4V TGCA 1 cut(s) 205
HpyF10VI GCNNNNNNNGC 1 cut(s) 202
Hsp92II CATG 2 cut(s) 248, 288
LguI GCTCTTC 1 cut(s) 65
LmnI GCTCC 2 cut(s) 92, 166
LpnPI CCDG 4 cut(s) 126, 146, 177, 245
Lsp1109I GCAGC 3 cut(s) 133, 217, 220
MboII GAAGA 7 cut(s) 22, 25, 26, 52, 121, 150, 178
MhlI GDGCHC 1 cut(s) 153
MmeI TCCRAC 2 cut(s) 106, 163
MnlI CCTC 5 cut(s) 89, 163, 166, 222, 241
MroXI GAANNNNTTC 2 cut(s) 59, 107
MslI CAYNNNNRTG 2 cut(s) 283, 289
MspI CCGG 1 cut(s) 164
MspR9I CCNGG 1 cut(s) 164
MwoI GCNNNNNNNGC 1 cut(s) 202
NciI CCSGG 1 cut(s) 164
NlaIII CATG 2 cut(s) 248, 288
PagI TCATGA 1 cut(s) 244
PciSI GCTCTTC 1 cut(s) 65
PdmI GAANNNNTTC 2 cut(s) 59, 107
PkrI GCNGC 3 cut(s) 123, 207, 210
RseI CAYNNNNRTG 2 cut(s) 283, 289
SapI GCTCTTC 1 cut(s) 65
SatI GCNGC 3 cut(s) 122, 206, 209
ScrFI CCNGG 1 cut(s) 164
SduI GDGCHC 1 cut(s) 153
SetI ASST 4 cut(s) 10, 60, 108, 171
SmiMI CAYNNNNRTG 2 cut(s) 283, 289
StyD4I CCNGG 1 cut(s) 162
StyI CCWWGG 1 cut(s) 217
TaqI TCGA 1 cut(s) 12
TseI GCWGC 3 cut(s) 121, 205, 208
XagI CCTNNNNNAGG 1 cut(s) 216
XmnI GAANNNNTTC 2 cut(s) 59, 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.