FvH4_3g01100

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000082
Physical Location & Seq
Reverse (-)
550707 .. 553327
2621 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g01100.t2

Sequence Viewer

Length: 702 bp
ATGGAACCATCAACTGGACTCTCCCAGAAACTACCTGATCCTGGTGTTCCAAATGAGTTTCAAATCTTTACTGGTTTCGGCTACGTCTCGGCCACTGACGACTACAAGATTCTCATCGCCAACTCTAGATTTGAGGAGGGAGAGCAATCCAAGATCCACATCTTCTCGTCGAAATCCAAATCTTGGAGAAGGATTCAAGATTCCCAATATTCGGGTTTGTCGATGTCAGTTTTGGGGACTCTTTGTAACGAGACACTTCATTGGCTGAGGTTCAAGCAAGATATTATAGTTGCTTTTGATTTAGCAGATGAGAAGTTCCGGATAATGGCGCTGCCTGTTGTTGAGGAGTATGGAGGTTTAGGGGACTTTGGAGGTTGTCTGTGTGTGTTTGGTCAGGTGGATGTTGCTGCTGCCTCTATAGATTTGTGGGTCATGAGGGAATATGGTAAGGGTAACTCCTGGACTAAGCTGTTTAACTTGAGGATTTCTGATCAGCCTGATAAGCAGATATGTTATGTCCAGCCAATCTTGGTTACTGAAACTTGTACATTTCTGGAGATACATACTGAATCAGGAAGTGACCGAAGGGTGGCGAAGCTGGTCAAGAGTTATCATAATGAATTGAAGATCGAAGAGGTTCATGTGGATAGATATAGGCACGGAATGGTTGGATATGAAGAGAGTCTACTTTGGCTTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

234

Amino Acids

26.56

Weight (kDa)

5.22

Isoelectric Point (pI)

45.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 3 - 158 2.6e-15 F-box associated beta propeller domain
FBA_1 PF07734 23 - 185 3.6e-15 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000082)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17540 FvH4_1g17540 FvH4_1g17540 FvH4_1g17540 FvH4_1g17550 FvH4_1g17560 FvH4_1g17570 FvH4_1g17570 FvH4_1g17570 FvH4_1g17581 FvH4_1g18380 FvH4_1g18391 FvH4_1g18430 FvH4_1g18470 FvH4_1g18480 FvH4_1g18480 FvH4_1g18480 FvH4_1g18870 FvH4_2g36701 FvH4_2g36701 FvH4_2g36710 FvH4_2g36711 FvH4_3g01100 FvH4_3g01100 FvH4_3g14940 FvH4_3g14941 FvH4_3g14950 FvH4_3g14952 FvH4_3g14954 FvH4_3g14954 FvH4_3g14954 FvH4_3g15782 FvH4_3g32340 FvH4_3g32350 FvH4_3g32390 FvH4_3g32390 FvH4_3g44560 FvH4_3g44581 FvH4_3g44650 FvH4_3g44660 FvH4_3g44671 FvH4_3g45110 FvH4_3g45120 FvH4_3g45161 FvH4_4g30361 FvH4_6g14790 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14972 FvH4_6g14980 FvH4_6g14980 FvH4_6g14981 FvH4_6g14990 FvH4_6g14991 FvH4_6g14991 FvH4_6g14993 FvH4_6g14993 FvH4_6g14994 FvH4_6g15010 FvH4_6g19961
malus_domestica MD09G1138900.v1.1
prunus_persica Prupe.6G214500_v2.0.a1 Prupe.6G214600_v2.0.a1 Prupe.6G214700_v2.0.a1 Prupe.6G214900_v2.0.a1 Prupe.6G215100_v2.0.a1 Prupe.7G008100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321661 RchiOBHm_Chr1g0378141 RchiOBHm_Chr2g0101031 RchiOBHm_Chr2g0107781 RchiOBHm_Chr2g0107801 RchiOBHm_Chr2g0107811 RchiOBHm_Chr2g0107821 RchiOBHm_Chr2g0107841 RchiOBHm_Chr2g0107851 RchiOBHm_Chr2g0107881 RchiOBHm_Chr2g0107891 RchiOBHm_Chr2g0109731 RchiOBHm_Chr2g0109761 RchiOBHm_Chr2g0109771 RchiOBHm_Chr2g0109781 RchiOBHm_Chr3g0468171 RchiOBHm_Chr3g0468191 RchiOBHm_Chr3g0475411 RchiOBHm_Chr5g0007501 RchiOBHm_Chr5g0024531 RchiOBHm_Chr5g0053901 RchiOBHm_Chr5g0059111 RchiOBHm_Chr5g0059201 RchiOBHm_Chr5g0059211 RchiOBHm_Chr5g0059291 RchiOBHm_Chr5g0059301 RchiOBHm_Chr5g0059321 RchiOBHm_Chr5g0059551 RchiOBHm_Chr5g0081341 RchiOBHm_Chr7g0211081
rosa_laevigata RLG00000003023 RLG00000017039 RLG00000017135 RLG00000017616 RLG00000017620 RLG00000017621 RLG00000017622 RLG00000017623 RLG00000017624 RLG00000017625 RLG00000017762 RLG00000017763 RLG00000017764 RLG00000017765 RLG00000024443 RLG00000026103 RLG00000031462 RLG00000035283 RLG00000036923 RLG00000036924 RLG00000036925
rosa_multiflora Rmu_co7981142.1_g000001 Rmu_co8037462.1_g000001 Rmu_co8043938.1_g000001 Rmu_co8085092.1_g000001 Rmu_co8243479.1_g000002 Rmu_co8254857.1_g000001 Rmu_co8270991.1_g000001 Rmu_co8304467.1_g000001 Rmu_co8322247.1_g000001 Rmu_sc0000186.1_g000008 Rmu_sc0000375.1_g000022 Rmu_sc0000625.1_g000006 Rmu_sc0001465.1_g000001 Rmu_sc0001484.1_g000034 Rmu_sc0001484.1_g000035 Rmu_sc0001484.1_g000036 Rmu_sc0001484.1_g000038 Rmu_sc0001484.1_g000041 Rmu_sc0001484.1_g000042 Rmu_sc0001793.1_g000054 Rmu_sc0001810.1_g000002 Rmu_sc0001810.1_g000003 Rmu_sc0001810.1_g000004 Rmu_sc0001862.1_g000003 Rmu_sc0002076.1_g000008 Rmu_sc0002076.1_g000009 Rmu_sc0002983.1_g000017 Rmu_sc0002983.1_g000035 Rmu_sc0002983.1_g000038 Rmu_sc0003121.1_g000002 Rmu_sc0003121.1_g000005 Rmu_sc0003121.1_g000006 Rmu_sc0003121.1_g000007 Rmu_sc0003659.1_g000007 Rmu_sc0004524.1_g000009 Rmu_sc0004524.1_g000010 Rmu_sc0004524.1_g000012 Rmu_sc0004650.1_g000003 Rmu_sc0006215.1_g000003 Rmu_sc0006889.1_g000020 Rmu_sc0006889.1_g000030 Rmu_sc0006959.1_g000021 Rmu_sc0007173.1_g000008 Rmu_sc0007698.1_g000019 Rmu_sc0007768.1_g000009 Rmu_sc0008992.1_g000002 Rmu_sc0008992.1_g000004 Rmu_sc0009575.1_g000001 Rmu_sc0009575.1_g000008 Rmu_sc0009650.1_g000002 Rmu_sc0009650.1_g000005 Rmu_sc0009650.1_g000009 Rmu_sc0012421.1_g000005 Rmu_sc0012471.1_g000023 Rmu_sc0012471.1_g000025 Rmu_sc0012670.1_g000002 Rmu_sc0012670.1_g000003 Rmu_sc0016637.1_g000005 Rmu_sc0018174.1_g000002 Rmu_sc0031424.1_g000001 Rmu_ssc0000182.1_g000007 Rmu_ssc0000182.1_g000010 Rmu_ssc0000432.1_g000029 Rmu_ssc0000432.1_g000035 Rmu_ssc0000432.1_g000036 Rmu_ssc0000432.1_g000042
rosa_roxburghii Rroxscaffold_153G00436690 Rroxscaffold_1G00002200 Rroxscaffold_1G00002220 Rroxscaffold_1G00021160 Rroxscaffold_1G00021240 Rroxscaffold_1G00021310 Rroxscaffold_1G00025950 Rroxscaffold_1G00026710 Rroxscaffold_1G00054720 Rroxscaffold_2G00104770 Rroxscaffold_2G00104780 Rroxscaffold_2G00133820 Rroxscaffold_2G00133950 Rroxscaffold_2G00133970 Rroxscaffold_2G00133980 Rroxscaffold_2G00133990 Rroxscaffold_2G00135690 Rroxscaffold_2G00135820 Rroxscaffold_2G00135850 Rroxscaffold_2G00135860 Rroxscaffold_2G00135890 Rroxscaffold_2G00135910 Rroxscaffold_2G00135920 Rroxscaffold_2G00135930 Rroxscaffold_2G00135940 Rroxscaffold_2G00141620 Rroxscaffold_3G00248120 Rroxscaffold_4G00277310 Rroxscaffold_6G00406330 Rroxscaffold_6G00412930 Rroxscaffold_6G00412940 Rroxscaffold_6G00412950 Rroxscaffold_6G00412970 Rroxscaffold_6G00413290
rosa_rugosa Rorug01G0019000 Rorug02G0095500 Rorug02G0095600 Rorug02G0095700 Rorug02G0095800 Rorug02G0095900 Rorug02G0096000 Rorug02G0096100 Rorug02G0096200 Rorug02G0147500 Rorug02G0147600 Rorug02G0147700 Rorug02G0147800 Rorug02G0148100 Rorug02G0148300 Rorug02G0148400 Rorug02G0148500 Rorug02G0148600 Rorug02G0149800 Rorug02G0162500 Rorug02G0162600 Rorug02G0162700 Rorug02G0162800 Rorug02G0510300 Rorug03G0090600 Rorug03G0093700 Rorug03G0093800 Rorug03G0093900 Rorug03G0094000 Rorug03G0148600 Rorug04G0427700 Rorug05G0083700 Rorug05G0321200 Rorug05G0321300 Rorug05G0321400 Rorug05G0321500 Rorug05G0321600 Rorug05G0321900 Rorug05G0322000 Rorug05G0322000 Rorug05G0322300 Rorug05G0475400 Rorug05G0475500 Rorug05G0475600.1 Rorug05G0475700 Rorug05G0475900
rosa_samantha Rh1DG457400 Rh2AG197800 Rh2AG208800 Rh5AG386200 Rh5BG397600 Rh5DG174500 Rh5DG381100 Rh5DG414700 Rh5DG414800 Rh5DG415500 Rh5DG415800
rosa_wichuraiana Rw0G010830 Rw0G010840 Rw0G010870 Rw0G015860 Rw0G015870 Rw1G037410 Rw1G040530 Rw2G011200 Rw2G011230 Rw2G015590 Rw2G015600 Rw2G015610 Rw2G015630 Rw2G015640 Rw2G015660 Rw2G015680 Rw2G015690 Rw3G013400 Rw3G013410 Rw3G018040 Rw5G036340 Rw5G036390 Rw5G049010 Rw5G049020 Rw5G049030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 14, 183
AccI GTMKAC 1 cut(s) 685
AccIII TCCGGA 1 cut(s) 318
AclWI GGATC 2 cut(s) 32, 148
AcoI YGGCCR 1 cut(s) 90
AfaI GTAC 1 cut(s) 547
AfiI CCNNNNNNNGG 6 cut(s) 14, 41, 183, 211, 325, 589
AgsI TTSAA 4 cut(s) 62, 197, 274, 625
AjnI CCWGG 2 cut(s) 40, 458
AluBI AGCT 2 cut(s) 469, 598
AluI AGCT 2 cut(s) 469, 598
Alw26I GTCTC 2 cut(s) 91, 245
AlwI GGATC 2 cut(s) 32, 148
Aor13HI TCCGGA 1 cut(s) 318
AoxI GGCC 1 cut(s) 90
ApeKI GCWGC 3 cut(s) 331, 407, 410
Asp700I GAANNNNTTC 1 cut(s) 636
AspLEI GCGC 1 cut(s) 331
BarI GAAGNNNNNNTAC 2 cut(s) 669, 701
BbvCI CCTCAGC 1 cut(s) 266
BbvI GCAGC 3 cut(s) 318, 394, 397
BccI CCATC 1 cut(s) 16
BciT130I CCWGG 2 cut(s) 42, 460
BclI TGATCA 1 cut(s) 490
BcoDI GTCTC 2 cut(s) 91, 245
BfaI CTAG 1 cut(s) 126
BfmI CTRYAG 1 cut(s) 417
BfoI RGCGCY 1 cut(s) 332
BisI GCNGC 3 cut(s) 332, 408, 411
BlsI GCNGC 3 cut(s) 333, 409, 412
Bme1390I CCNGG 2 cut(s) 42, 460
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 2 cut(s) 42, 460
BpmI CTGGAG 1 cut(s) 575
Bpu10I CCTNAGC 1 cut(s) 266
BpuEI CTTGAG 1 cut(s) 499
BsaBI GATNNNNATC 2 cut(s) 113, 158
BsaWI WCCGGW 1 cut(s) 318
Bsc4I CCNNNNNNNGG 6 cut(s) 14, 41, 183, 211, 325, 589
Bse1I ACTGG 2 cut(s) 19, 76
Bse8I GATNNNNATC 2 cut(s) 113, 158
BseAI TCCGGA 1 cut(s) 318
BseBI CCWGG 2 cut(s) 42, 460
BseGI GGATG 1 cut(s) 406
BseJI GATNNNNATC 2 cut(s) 113, 158
BseLI CCNNNNNNNGG 6 cut(s) 14, 41, 183, 211, 325, 589
BseMII CTCAG 1 cut(s) 257
BseNI ACTGG 2 cut(s) 19, 76
BseRI GAGGAG 2 cut(s) 149, 359
BseXI GCAGC 3 cut(s) 318, 394, 397
BshFI GGCC 1 cut(s) 92
BsiSI CCGG 1 cut(s) 319
BslFI GGGAC 2 cut(s) 250, 377
BslI CCNNNNNNNGG 6 cut(s) 14, 41, 183, 211, 325, 589
BsmAI GTCTC 2 cut(s) 91, 245
BsmBI CGTCTC 1 cut(s) 91
BsmFI GGGAC 2 cut(s) 250, 377
BsnI GGCC 1 cut(s) 92
Bsp13I TCCGGA 1 cut(s) 318
Bsp1407I TGTACA 1 cut(s) 545
Bsp143I GATC 4 cut(s) 37, 153, 490, 627
BspANI GGCC 1 cut(s) 92
BspCNI CTCAG 1 cut(s) 258
BspEI TCCGGA 1 cut(s) 318
BspHI TCATGA 1 cut(s) 432
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 2 cut(s) 32, 148
BsrGI TGTACA 1 cut(s) 545
BsrI ACTGG 2 cut(s) 19, 76
BssMI GATC 4 cut(s) 37, 153, 490, 627
Bst2UI CCWGG 2 cut(s) 42, 460
Bst6I CTCTTC 2 cut(s) 627, 672
BstAUI TGTACA 1 cut(s) 545
BstDEI CTNAG 2 cut(s) 266, 465
BstF5I GGATG 1 cut(s) 406
BstH2I RGCGCY 1 cut(s) 332
BstHHI GCGC 1 cut(s) 331
BstKTI GATC 4 cut(s) 40, 156, 493, 630
BstMAI GTCTC 2 cut(s) 91, 245
BstMBI GATC 4 cut(s) 37, 153, 490, 627
BstMWI GCNNNNNNNGC 1 cut(s) 502
BstNI CCWGG 2 cut(s) 42, 460
BstSCI CCNGG 2 cut(s) 40, 458
BstSFI CTRYAG 1 cut(s) 417
BstV1I GCAGC 3 cut(s) 318, 394, 397
BstX2I RGATCY 1 cut(s) 153
BstYI RGATCY 1 cut(s) 153
BsuRI GGCC 1 cut(s) 92
BtgZI GCGATG 1 cut(s) 100
BtsCI GGATG 1 cut(s) 406
BtsIMutI CAGTG 1 cut(s) 93
CciI TCATGA 1 cut(s) 432
CfoI GCGC 1 cut(s) 331
Csp6I GTAC 1 cut(s) 546
CviAII CATG 2 cut(s) 433, 641
CviJI RGCY 8 cut(s) 81, 92, 265, 469, 496, 523, 598, 694
CviKI_1 RGCY 8 cut(s) 81, 92, 265, 469, 496, 523, 598, 694
CviQI GTAC 1 cut(s) 546
DdeI CTNAG 2 cut(s) 266, 465
DpnI GATC 4 cut(s) 39, 155, 492, 629
DpnII GATC 4 cut(s) 37, 153, 490, 627
EaeI YGGCCR 1 cut(s) 90
Eam1104I CTCTTC 2 cut(s) 627, 672
EarI CTCTTC 2 cut(s) 627, 672
EcoRII CCWGG 2 cut(s) 40, 458
Esp3I CGTCTC 1 cut(s) 91
FaeI CATG 2 cut(s) 436, 644
FaqI GGGAC 2 cut(s) 250, 377
FatI CATG 2 cut(s) 432, 640
FbaI TGATCA 1 cut(s) 490
FblI GTMKAC 1 cut(s) 685
Fnu4HI GCNGC 3 cut(s) 332, 408, 411
FokI GGATG 1 cut(s) 413
Fsp4HI GCNGC 3 cut(s) 332, 408, 411
FspBI CTAG 1 cut(s) 126
GlaI GCGC 1 cut(s) 330
GluI GCNGC 3 cut(s) 332, 408, 411
GsuI CTGGAG 1 cut(s) 575
HaeII RGCGCY 1 cut(s) 332
HaeIII GGCC 1 cut(s) 92
HapII CCGG 1 cut(s) 319
HhaI GCGC 1 cut(s) 331
Hin1II CATG 2 cut(s) 436, 644
Hin6I GCGC 1 cut(s) 329
HinP1I GCGC 1 cut(s) 329
HinfI GANTC 7 cut(s) 18, 109, 193, 200, 238, 569, 682
HpaII CCGG 1 cut(s) 319
Hpy166II GTNNAC 1 cut(s) 686
Hpy188I TCNGA 1 cut(s) 490
Hpy188III TCNNGA 7 cut(s) 126, 197, 319, 433, 554, 573, 604
Hpy8I GTNNAC 1 cut(s) 686
Hpy99I CGWCG 1 cut(s) 172
HpyAV CCTTC 2 cut(s) 183, 579
HpyCH4IV ACGT 1 cut(s) 84
HpyF10VI GCNNNNNNNGC 1 cut(s) 502
HpyF3I CTNAG 2 cut(s) 266, 465
HpySE526I ACGT 1 cut(s) 84
Hsp92II CATG 2 cut(s) 436, 644
HspAI GCGC 1 cut(s) 329
Kpn2I TCCGGA 1 cut(s) 318
Ksp22I TGATCA 1 cut(s) 490
Kzo9I GATC 4 cut(s) 37, 153, 490, 627
Lsp1109I GCAGC 3 cut(s) 318, 394, 397
MaeI CTAG 1 cut(s) 126
MaeII ACGT 1 cut(s) 84
MaeIII GTNAC 4 cut(s) 245, 452, 532, 578
MalI GATC 4 cut(s) 39, 155, 492, 629
MboI GATC 4 cut(s) 37, 153, 490, 627
MboII GAAGA 4 cut(s) 154, 637, 644, 689
MflI RGATCY 1 cut(s) 153
MluCI AATT 1 cut(s) 620
MlyI GAGTC 3 cut(s) 12, 232, 691
MmeI TCCRAC 1 cut(s) 649
MroI TCCGGA 1 cut(s) 318
MroXI GAANNNNTTC 1 cut(s) 636
MseI TTAA 1 cut(s) 474
MspI CCGG 1 cut(s) 319
MspR9I CCNGG 2 cut(s) 42, 460
MvaI CCWGG 2 cut(s) 42, 460
MwoI GCNNNNNNNGC 1 cut(s) 502
NdeII GATC 4 cut(s) 37, 153, 490, 627
NlaIII CATG 2 cut(s) 436, 644
NlaIV GGNNCC 1 cut(s) 6
NmeAIII GCCGAG 1 cut(s) 68
NmuCI GTSAC 1 cut(s) 578
PagI TCATGA 1 cut(s) 432
PcsI WCGNNNNNNNCGW 1 cut(s) 218
PdmI GAANNNNTTC 1 cut(s) 636
PfeI GAWTC 4 cut(s) 109, 193, 200, 569
PflMI CCANNNNNTGG 2 cut(s) 14, 183
PfoI TCCNGGA 1 cut(s) 458
PkrI GCNGC 3 cut(s) 333, 409, 412
PleI GAGTC 3 cut(s) 12, 232, 690
PpsI GAGTC 3 cut(s) 12, 232, 690
Psp6I CCWGG 2 cut(s) 40, 458
PspGI CCWGG 2 cut(s) 40, 458
PspN4I GGNNCC 1 cut(s) 6
PsuI RGATCY 1 cut(s) 153
RsaI GTAC 1 cut(s) 547
RsaNI GTAC 1 cut(s) 546
SaqAI TTAA 1 cut(s) 474
SatI GCNGC 3 cut(s) 332, 408, 411
Sau3AI GATC 4 cut(s) 37, 153, 490, 627
SchI GAGTC 3 cut(s) 12, 232, 691
ScrFI CCNGG 2 cut(s) 42, 460
SetI ASST 9 cut(s) 37, 87, 272, 358, 376, 399, 471, 600, 639
SfcI CTRYAG 1 cut(s) 417
SmlI CTYRAG 2 cut(s) 478, 695
SmoI CTYRAG 2 cut(s) 478, 695
Sse9I AATT 1 cut(s) 620
SspI AATATT 1 cut(s) 209
SspMI CTAG 1 cut(s) 126
StyD4I CCNGG 2 cut(s) 40, 458
TaiI ACGT 1 cut(s) 87
TaqI TCGA 3 cut(s) 170, 221, 630
TaqII GACCGA 1 cut(s) 597
TasI AATT 1 cut(s) 620
TatI WGTACW 1 cut(s) 545
TfiI GAWTC 4 cut(s) 109, 193, 200, 569
Tru1I TTAA 1 cut(s) 474
Tru9I TTAA 1 cut(s) 474
TscAI CASTG 1 cut(s) 100
TseFI GTSAC 1 cut(s) 578
TseI GCWGC 3 cut(s) 331, 407, 410
Tsp45I GTSAC 1 cut(s) 578
TspDTI ATGAA 4 cut(s) 248, 629, 633, 690
TspGWI ACGGA 1 cut(s) 675
TspRI CASTG 1 cut(s) 100
Van91I CCANNNNNTGG 2 cut(s) 14, 183
XbaI TCTAGA 1 cut(s) 125
XmiI GTMKAC 1 cut(s) 685
XmnI GAANNNNTTC 1 cut(s) 636
XspI CTAG 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.