FvH4_6g14994

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000082
Physical Location & Seq
Reverse (-)
9313958 .. 9314437
480 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g14994.t1

Sequence Viewer

Length: 480 bp
ATGGAGGAACCAACCCTACCGGAAGAGATGATAGTGCTCATCCTCACCTTCCATTCCCTCATTCTCTCCGACCCCAAATTCGCTCAATCCCAATTTCGAGCAGCTCGTGACCGGAAAGCTCCAAATAGCAGACTCCTCTGCTCCTCTTGTTTTAAACTCAGAGCTCGATTCGAATCAATAGACTTGGAGTCGCCGTCGTTTGGAGATTCTTCTTCTGTCAGAGAGCTCAACAGTGGGCTCCTTAGTGTATTACTGGGCTCCTGCAATGGTATTGTATTTCTCGCTTTTGATTACAAAATATTTTACATGAGGAACCCTTCCACTGGTTTCTTCAAGAAATTACCTGACCACCCTGGGTTTTCCCCACATTTAAATGAGCTCGTTGCTTTTGGCGTTGGCTATTTACCGGCCACCGATGACTACAGAGTCCTCGTGGTCTCCCATATTATTGAAACTAAGGATGAGGCCGCCATTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

160

Amino Acids

17.82

Weight (kDa)

5.78

Isoelectric Point (pI)

52.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000082)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17540 FvH4_1g17540 FvH4_1g17540 FvH4_1g17540 FvH4_1g17550 FvH4_1g17560 FvH4_1g17570 FvH4_1g17570 FvH4_1g17570 FvH4_1g17581 FvH4_1g18380 FvH4_1g18391 FvH4_1g18430 FvH4_1g18470 FvH4_1g18480 FvH4_1g18480 FvH4_1g18480 FvH4_1g18870 FvH4_2g36701 FvH4_2g36701 FvH4_2g36710 FvH4_2g36711 FvH4_3g01100 FvH4_3g01100 FvH4_3g14940 FvH4_3g14941 FvH4_3g14950 FvH4_3g14952 FvH4_3g14954 FvH4_3g14954 FvH4_3g14954 FvH4_3g15782 FvH4_3g32340 FvH4_3g32350 FvH4_3g32390 FvH4_3g32390 FvH4_3g44560 FvH4_3g44581 FvH4_3g44650 FvH4_3g44660 FvH4_3g44671 FvH4_3g45110 FvH4_3g45120 FvH4_3g45161 FvH4_4g30361 FvH4_6g14790 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14972 FvH4_6g14980 FvH4_6g14980 FvH4_6g14981 FvH4_6g14990 FvH4_6g14991 FvH4_6g14991 FvH4_6g14993 FvH4_6g14993 FvH4_6g14994 FvH4_6g15010 FvH4_6g19961
malus_domestica MD09G1138900.v1.1
prunus_persica Prupe.6G214500_v2.0.a1 Prupe.6G214600_v2.0.a1 Prupe.6G214700_v2.0.a1 Prupe.6G214900_v2.0.a1 Prupe.6G215100_v2.0.a1 Prupe.7G008100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321661 RchiOBHm_Chr1g0378141 RchiOBHm_Chr2g0101031 RchiOBHm_Chr2g0107781 RchiOBHm_Chr2g0107801 RchiOBHm_Chr2g0107811 RchiOBHm_Chr2g0107821 RchiOBHm_Chr2g0107841 RchiOBHm_Chr2g0107851 RchiOBHm_Chr2g0107881 RchiOBHm_Chr2g0107891 RchiOBHm_Chr2g0109731 RchiOBHm_Chr2g0109761 RchiOBHm_Chr2g0109771 RchiOBHm_Chr2g0109781 RchiOBHm_Chr3g0468171 RchiOBHm_Chr3g0468191 RchiOBHm_Chr3g0475411 RchiOBHm_Chr5g0007501 RchiOBHm_Chr5g0024531 RchiOBHm_Chr5g0053901 RchiOBHm_Chr5g0059111 RchiOBHm_Chr5g0059201 RchiOBHm_Chr5g0059211 RchiOBHm_Chr5g0059291 RchiOBHm_Chr5g0059301 RchiOBHm_Chr5g0059321 RchiOBHm_Chr5g0059551 RchiOBHm_Chr5g0081341 RchiOBHm_Chr7g0211081
rosa_laevigata RLG00000003023 RLG00000017039 RLG00000017135 RLG00000017616 RLG00000017620 RLG00000017621 RLG00000017622 RLG00000017623 RLG00000017624 RLG00000017625 RLG00000017762 RLG00000017763 RLG00000017764 RLG00000017765 RLG00000024443 RLG00000026103 RLG00000031462 RLG00000035283 RLG00000036923 RLG00000036924 RLG00000036925
rosa_multiflora Rmu_co7981142.1_g000001 Rmu_co8037462.1_g000001 Rmu_co8043938.1_g000001 Rmu_co8085092.1_g000001 Rmu_co8243479.1_g000002 Rmu_co8254857.1_g000001 Rmu_co8270991.1_g000001 Rmu_co8304467.1_g000001 Rmu_co8322247.1_g000001 Rmu_sc0000186.1_g000008 Rmu_sc0000375.1_g000022 Rmu_sc0000625.1_g000006 Rmu_sc0001465.1_g000001 Rmu_sc0001484.1_g000034 Rmu_sc0001484.1_g000035 Rmu_sc0001484.1_g000036 Rmu_sc0001484.1_g000038 Rmu_sc0001484.1_g000041 Rmu_sc0001484.1_g000042 Rmu_sc0001793.1_g000054 Rmu_sc0001810.1_g000002 Rmu_sc0001810.1_g000003 Rmu_sc0001810.1_g000004 Rmu_sc0001862.1_g000003 Rmu_sc0002076.1_g000008 Rmu_sc0002076.1_g000009 Rmu_sc0002983.1_g000017 Rmu_sc0002983.1_g000035 Rmu_sc0002983.1_g000038 Rmu_sc0003121.1_g000002 Rmu_sc0003121.1_g000005 Rmu_sc0003121.1_g000006 Rmu_sc0003121.1_g000007 Rmu_sc0003659.1_g000007 Rmu_sc0004524.1_g000009 Rmu_sc0004524.1_g000010 Rmu_sc0004524.1_g000012 Rmu_sc0004650.1_g000003 Rmu_sc0006215.1_g000003 Rmu_sc0006889.1_g000020 Rmu_sc0006889.1_g000030 Rmu_sc0006959.1_g000021 Rmu_sc0007173.1_g000008 Rmu_sc0007698.1_g000019 Rmu_sc0007768.1_g000009 Rmu_sc0008992.1_g000002 Rmu_sc0008992.1_g000004 Rmu_sc0009575.1_g000001 Rmu_sc0009575.1_g000008 Rmu_sc0009650.1_g000002 Rmu_sc0009650.1_g000005 Rmu_sc0009650.1_g000009 Rmu_sc0012421.1_g000005 Rmu_sc0012471.1_g000023 Rmu_sc0012471.1_g000025 Rmu_sc0012670.1_g000002 Rmu_sc0012670.1_g000003 Rmu_sc0016637.1_g000005 Rmu_sc0018174.1_g000002 Rmu_sc0031424.1_g000001 Rmu_ssc0000182.1_g000007 Rmu_ssc0000182.1_g000010 Rmu_ssc0000432.1_g000029 Rmu_ssc0000432.1_g000035 Rmu_ssc0000432.1_g000036 Rmu_ssc0000432.1_g000042
rosa_roxburghii Rroxscaffold_153G00436690 Rroxscaffold_1G00002200 Rroxscaffold_1G00002220 Rroxscaffold_1G00021160 Rroxscaffold_1G00021240 Rroxscaffold_1G00021310 Rroxscaffold_1G00025950 Rroxscaffold_1G00026710 Rroxscaffold_1G00054720 Rroxscaffold_2G00104770 Rroxscaffold_2G00104780 Rroxscaffold_2G00133820 Rroxscaffold_2G00133950 Rroxscaffold_2G00133970 Rroxscaffold_2G00133980 Rroxscaffold_2G00133990 Rroxscaffold_2G00135690 Rroxscaffold_2G00135820 Rroxscaffold_2G00135850 Rroxscaffold_2G00135860 Rroxscaffold_2G00135890 Rroxscaffold_2G00135910 Rroxscaffold_2G00135920 Rroxscaffold_2G00135930 Rroxscaffold_2G00135940 Rroxscaffold_2G00141620 Rroxscaffold_3G00248120 Rroxscaffold_4G00277310 Rroxscaffold_6G00406330 Rroxscaffold_6G00412930 Rroxscaffold_6G00412940 Rroxscaffold_6G00412950 Rroxscaffold_6G00412970 Rroxscaffold_6G00413290
rosa_rugosa Rorug01G0019000 Rorug02G0095500 Rorug02G0095600 Rorug02G0095700 Rorug02G0095800 Rorug02G0095900 Rorug02G0096000 Rorug02G0096100 Rorug02G0096200 Rorug02G0147500 Rorug02G0147600 Rorug02G0147700 Rorug02G0147800 Rorug02G0148100 Rorug02G0148300 Rorug02G0148400 Rorug02G0148500 Rorug02G0148600 Rorug02G0149800 Rorug02G0162500 Rorug02G0162600 Rorug02G0162700 Rorug02G0162800 Rorug02G0510300 Rorug03G0090600 Rorug03G0093700 Rorug03G0093800 Rorug03G0093900 Rorug03G0094000 Rorug03G0148600 Rorug04G0427700 Rorug05G0083700 Rorug05G0321200 Rorug05G0321300 Rorug05G0321400 Rorug05G0321500 Rorug05G0321600 Rorug05G0321900 Rorug05G0322000 Rorug05G0322000 Rorug05G0322300 Rorug05G0475400 Rorug05G0475500 Rorug05G0475600.1 Rorug05G0475700 Rorug05G0475900
rosa_samantha Rh1DG457400 Rh2AG197800 Rh2AG208800 Rh5AG386200 Rh5BG397600 Rh5DG174500 Rh5DG381100 Rh5DG414700 Rh5DG414800 Rh5DG415500 Rh5DG415800
rosa_wichuraiana Rw0G010830 Rw0G010840 Rw0G010870 Rw0G015860 Rw0G015870 Rw1G037410 Rw1G040530 Rw2G011200 Rw2G011230 Rw2G015590 Rw2G015600 Rw2G015610 Rw2G015630 Rw2G015640 Rw2G015660 Rw2G015680 Rw2G015690 Rw3G013400 Rw3G013410 Rw3G018040 Rw5G036340 Rw5G036390 Rw5G049010 Rw5G049020 Rw5G049030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 425
AciI CCGC 1 cut(s) 468
AcoI YGGCCR 1 cut(s) 408
AcsI RAATTY 1 cut(s) 77
AfiI CCNNNNNNNGG 2 cut(s) 200, 323
AgsI TTSAA 2 cut(s) 334, 452
AhdI GACNNNNNGTC 1 cut(s) 187
AjnI CCWGG 1 cut(s) 352
AluBI AGCT 5 cut(s) 104, 119, 164, 226, 379
AluI AGCT 5 cut(s) 104, 119, 164, 226, 379
Alw21I GWGCWC 4 cut(s) 39, 166, 228, 381
Alw26I GTCTC 1 cut(s) 442
AoxI GGCC 2 cut(s) 408, 465
ApeKI GCWGC 1 cut(s) 101
ApoI RAATTY 1 cut(s) 77
ArsI GACNNNNNNTTYG 2 cut(s) 62, 94
AsuHPI GGTGA 1 cut(s) 37
AsuII TTCGAA 1 cut(s) 171
BanII GRGCYC 5 cut(s) 166, 228, 240, 260, 381
BauI CACGAG 2 cut(s) 105, 431
Bbv12I GWGCWC 4 cut(s) 39, 166, 228, 381
BbvI GCAGC 1 cut(s) 113
BceAI ACGGC 1 cut(s) 178
BciT130I CCWGG 1 cut(s) 354
BcoDI GTCTC 1 cut(s) 442
BfaI CTAG 1 cut(s) 478
BfmI CTRYAG 1 cut(s) 421
BisI GCNGC 2 cut(s) 102, 468
BlsI GCNGC 2 cut(s) 103, 469
Bme1390I CCNGG 1 cut(s) 354
BmeRI GACNNNNNGTC 1 cut(s) 187
BmiI GGNNCC 4 cut(s) 9, 239, 259, 314
BmrFI CCNGG 1 cut(s) 354
BmrI ACTGGG 1 cut(s) 263
BmuI ACTGGG 1 cut(s) 263
Bpu14I TTCGAA 1 cut(s) 171
BsaBI GATNNNNATC 1 cut(s) 172
BsaI GGTCTC 1 cut(s) 442
BsaJI CCNNGG 2 cut(s) 352, 353
BsaWI WCCGGW 2 cut(s) 19, 111
BsaXI ACNNNNNCTCC 2 cut(s) 179, 209
Bsc4I CCNNNNNNNGG 2 cut(s) 200, 323
Bse118I RCCGGY 1 cut(s) 406
Bse1I ACTGG 2 cut(s) 258, 328
Bse3DI GCAATG 1 cut(s) 271
Bse8I GATNNNNATC 1 cut(s) 172
BseBI CCWGG 1 cut(s) 354
BseDI CCNNGG 2 cut(s) 352, 353
BseGI GGATG 2 cut(s) 39, 466
BseJI GATNNNNATC 1 cut(s) 172
BseLI CCNNNNNNNGG 2 cut(s) 200, 323
BseMI GCAATG 1 cut(s) 271
BseMII CTCAG 1 cut(s) 172
BseNI ACTGG 2 cut(s) 258, 328
BseRI GAGGAG 2 cut(s) 125, 133
BseXI GCAGC 1 cut(s) 113
BshFI GGCC 2 cut(s) 410, 467
BsiHKAI GWGCWC 4 cut(s) 39, 166, 228, 381
BsiSI CCGG 3 cut(s) 20, 112, 407
BslI CCNNNNNNNGG 2 cut(s) 200, 323
BsmAI GTCTC 1 cut(s) 442
BsnI GGCC 2 cut(s) 410, 467
Bso31I GGTCTC 1 cut(s) 442
Bsp119I TTCGAA 1 cut(s) 171
Bsp1286I GDGCHC 6 cut(s) 39, 166, 228, 240, 260, 381
BspACI CCGC 1 cut(s) 468
BspANI GGCC 2 cut(s) 410, 467
BspCNI CTCAG 1 cut(s) 171
BspLI GGNNCC 4 cut(s) 9, 239, 259, 314
BspT104I TTCGAA 1 cut(s) 171
BspTNI GGTCTC 1 cut(s) 442
BsrDI GCAATG 1 cut(s) 271
BsrFI RCCGGY 1 cut(s) 406
BsrI ACTGG 2 cut(s) 258, 328
BssAI RCCGGY 1 cut(s) 406
BssECI CCNNGG 2 cut(s) 352, 353
BssSI CACGAG 2 cut(s) 105, 431
Bst2BI CACGAG 2 cut(s) 105, 431
Bst2UI CCWGG 1 cut(s) 354
Bst4CI ACNGT 1 cut(s) 233
Bst6I CTCTTC 1 cut(s) 18
BstBI TTCGAA 1 cut(s) 171
BstDEI CTNAG 3 cut(s) 158, 242, 456
BstF5I GGATG 2 cut(s) 39, 466
BstMAI GTCTC 1 cut(s) 442
BstNI CCWGG 1 cut(s) 354
BstSCI CCNGG 1 cut(s) 352
BstSFI CTRYAG 1 cut(s) 421
BstV1I GCAGC 1 cut(s) 113
BsuRI GGCC 2 cut(s) 410, 467
BtsCI GGATG 2 cut(s) 39, 466
BtsIMutI CAGTG 2 cut(s) 238, 321
Cfr10I RCCGGY 1 cut(s) 406
CviAII CATG 1 cut(s) 307
DdeI CTNAG 3 cut(s) 158, 242, 456
DraI TTTAAA 2 cut(s) 154, 372
DrdI GACNNNNNNGTC 1 cut(s) 425
DriI GACNNNNNGTC 1 cut(s) 187
DseDI GACNNNNNNGTC 1 cut(s) 425
EaeI YGGCCR 1 cut(s) 408
Eam1104I CTCTTC 1 cut(s) 18
Eam1105I GACNNNNNGTC 1 cut(s) 187
EarI CTCTTC 1 cut(s) 18
Ecl136II GAGCTC 3 cut(s) 164, 226, 379
Eco24I GRGCYC 5 cut(s) 166, 228, 240, 260, 381
Eco31I GGTCTC 1 cut(s) 442
Eco53kI GAGCTC 3 cut(s) 164, 226, 379
EcoICRI GAGCTC 3 cut(s) 164, 226, 379
EcoRII CCWGG 1 cut(s) 352
EcoT38I GRGCYC 5 cut(s) 166, 228, 240, 260, 381
FaeI CATG 1 cut(s) 310
FaiI YATR 2 cut(s) 308, 444
FatI CATG 1 cut(s) 306
Fnu4HI GCNGC 2 cut(s) 102, 468
FokI GGATG 2 cut(s) 26, 473
FriOI GRGCYC 5 cut(s) 166, 228, 240, 260, 381
Fsp4HI GCNGC 2 cut(s) 102, 468
FspBI CTAG 1 cut(s) 478
GluI GCNGC 2 cut(s) 102, 468
HaeIII GGCC 2 cut(s) 410, 467
HapII CCGG 3 cut(s) 20, 112, 407
Hin1II CATG 1 cut(s) 310
HinfI GANTC 6 cut(s) 132, 168, 173, 188, 206, 426
HpaII CCGG 3 cut(s) 20, 112, 407
HphI GGTGA 1 cut(s) 37
Hpy188I TCNGA 3 cut(s) 70, 161, 221
Hpy188III TCNNGA 2 cut(s) 107, 334
Hpy99I CGWCG 1 cut(s) 199
HpyAV CCTTC 2 cut(s) 58, 327
HpyCH4III ACNGT 1 cut(s) 233
HpyCH4V TGCA 1 cut(s) 264
HpyF3I CTNAG 3 cut(s) 158, 242, 456
Hsp92II CATG 1 cut(s) 310
LmnI GCTCC 4 cut(s) 124, 146, 243, 263
LpnPI CCDG 9 cut(s) 33, 125, 239, 274, 309, 339, 357, 366, 420
Lsp1109I GCAGC 1 cut(s) 113
MaeI CTAG 1 cut(s) 478
MaeIII GTNAC 1 cut(s) 107
MboII GAAGA 4 cut(s) 35, 201, 204, 322
MhlI GDGCHC 6 cut(s) 39, 166, 228, 240, 260, 381
MluCI AATT 3 cut(s) 77, 92, 338
MlyI GAGTC 3 cut(s) 126, 197, 435
MmeI TCCRAC 1 cut(s) 93
MnlI CCTC 7 cut(s) 53, 68, 146, 154, 303, 440, 457
MseI TTAA 2 cut(s) 153, 371
MslI CAYNNNNRTG 1 cut(s) 372
MspI CCGG 3 cut(s) 20, 112, 407
MspR9I CCNGG 1 cut(s) 354
MvaI CCWGG 1 cut(s) 354
NlaIII CATG 1 cut(s) 310
NlaIV GGNNCC 4 cut(s) 9, 239, 259, 314
NmuCI GTSAC 1 cut(s) 107
NspV TTCGAA 1 cut(s) 171
PasI CCCWGGG 1 cut(s) 353
PcsI WCGNNNNNNNCGW 1 cut(s) 103
PfeI GAWTC 3 cut(s) 168, 173, 206
PkrI GCNGC 2 cut(s) 103, 469
PleI GAGTC 3 cut(s) 126, 196, 434
PpsI GAGTC 3 cut(s) 126, 196, 434
Psp124BI GAGCTC 3 cut(s) 166, 228, 381
Psp6I CCWGG 1 cut(s) 352
PspGI CCWGG 1 cut(s) 352
PspN4I GGNNCC 4 cut(s) 9, 239, 259, 314
PsrI GAACNNNNNNTAC 1 cut(s) 32
RseI CAYNNNNRTG 1 cut(s) 372
SacI GAGCTC 3 cut(s) 166, 228, 381
SaqAI TTAA 2 cut(s) 153, 371
SatI GCNGC 2 cut(s) 102, 468
SchI GAGTC 3 cut(s) 126, 197, 435
ScrFI CCNGG 1 cut(s) 354
SduI GDGCHC 6 cut(s) 39, 166, 228, 240, 260, 381
SetI ASST 7 cut(s) 50, 106, 121, 166, 228, 346, 381
SfcI CTRYAG 1 cut(s) 421
SfuI TTCGAA 1 cut(s) 171
SmiI ATTTAAAT 1 cut(s) 372
SmiMI CAYNNNNRTG 1 cut(s) 372
Sse9I AATT 3 cut(s) 77, 92, 338
SsiI CCGC 1 cut(s) 468
SspI AATATT 1 cut(s) 300
SspMI CTAG 1 cut(s) 478
SstI GAGCTC 3 cut(s) 166, 228, 381
StyD4I CCNGG 1 cut(s) 352
SwaI ATTTAAAT 1 cut(s) 372
TaaI ACNGT 1 cut(s) 233
TaqI TCGA 3 cut(s) 97, 166, 171
TasI AATT 3 cut(s) 77, 92, 338
TauI GCSGC 1 cut(s) 470
TfiI GAWTC 3 cut(s) 168, 173, 206
Tru1I TTAA 2 cut(s) 153, 371
Tru9I TTAA 2 cut(s) 153, 371
TscAI CASTG 2 cut(s) 238, 328
TseFI GTSAC 1 cut(s) 107
TseI GCWGC 1 cut(s) 101
Tsp45I GTSAC 1 cut(s) 107
TspRI CASTG 2 cut(s) 238, 328
XapI RAATTY 1 cut(s) 77
XspI CTAG 1 cut(s) 478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.