Rroxscaffold_2G00104780

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000082
Physical Location & Seq
Reverse (-)
28093267 .. 28094966
1700 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00104780.1

Sequence Viewer

Length: 555 bp
ATGTCGTCTTGTTCTTCTTCTTCTTCAATTTCTTGTTTCTTGACCCTGGAAGACCTTGATGTGGGGGTTGTGAAAACATTCCACCCCACCGATTCTGATTTAGTGGGAAGCTATCTCTACAACAGAATCAAATCCCCAACCCCAATTGGAAAACAAACATTCCCCGAGATTGAAATATATGGCACCACAGCTTGGTGCCCGTGTGTATCGCGTCATCCGGATGGTGCTTTTGACTGGGTCATGAGAGAATATGGCGTCGGTGGCTCATGGATTATGCTCTTTAGCTTAAAGCCGCCCGAGTTGCCCTTGTATTCCAGACAATTCTTGGTTGTGGAAAGTTGTACGGTTGCCGCGGATTGGACCGGCGAGGGGTTCAAGTTGATGAGGATTGATCATAAAGAAGACGAGAAGCTTGGGCGGTATATGGTTAAGGGGGTTCGCATTTGTATGGTTGAATACGAAGATAGTCTACTTTGGATTAGTGGTTATCATTCGGGAAAAAGAGATAGAGCAGGTCAAGATACTCGAAACCCATCGAAGGCCTCGGGAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

184

Amino Acids

20.63

Weight (kDa)

5.81

Isoelectric Point (pI)

47.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000082)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17540 FvH4_1g17540 FvH4_1g17540 FvH4_1g17540 FvH4_1g17550 FvH4_1g17560 FvH4_1g17570 FvH4_1g17570 FvH4_1g17570 FvH4_1g17581 FvH4_1g18380 FvH4_1g18391 FvH4_1g18430 FvH4_1g18470 FvH4_1g18480 FvH4_1g18480 FvH4_1g18480 FvH4_1g18870 FvH4_2g36701 FvH4_2g36701 FvH4_2g36710 FvH4_2g36711 FvH4_3g01100 FvH4_3g01100 FvH4_3g14940 FvH4_3g14941 FvH4_3g14950 FvH4_3g14952 FvH4_3g14954 FvH4_3g14954 FvH4_3g14954 FvH4_3g15782 FvH4_3g32340 FvH4_3g32350 FvH4_3g32390 FvH4_3g32390 FvH4_3g44560 FvH4_3g44581 FvH4_3g44650 FvH4_3g44660 FvH4_3g44671 FvH4_3g45110 FvH4_3g45120 FvH4_3g45161 FvH4_4g30361 FvH4_6g14790 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14900 FvH4_6g14972 FvH4_6g14980 FvH4_6g14980 FvH4_6g14981 FvH4_6g14990 FvH4_6g14991 FvH4_6g14991 FvH4_6g14993 FvH4_6g14993 FvH4_6g14994 FvH4_6g15010 FvH4_6g19961
malus_domestica MD09G1138900.v1.1
prunus_persica Prupe.6G214500_v2.0.a1 Prupe.6G214600_v2.0.a1 Prupe.6G214700_v2.0.a1 Prupe.6G214900_v2.0.a1 Prupe.6G215100_v2.0.a1 Prupe.7G008100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321661 RchiOBHm_Chr1g0378141 RchiOBHm_Chr2g0101031 RchiOBHm_Chr2g0107781 RchiOBHm_Chr2g0107801 RchiOBHm_Chr2g0107811 RchiOBHm_Chr2g0107821 RchiOBHm_Chr2g0107841 RchiOBHm_Chr2g0107851 RchiOBHm_Chr2g0107881 RchiOBHm_Chr2g0107891 RchiOBHm_Chr2g0109731 RchiOBHm_Chr2g0109761 RchiOBHm_Chr2g0109771 RchiOBHm_Chr2g0109781 RchiOBHm_Chr3g0468171 RchiOBHm_Chr3g0468191 RchiOBHm_Chr3g0475411 RchiOBHm_Chr5g0007501 RchiOBHm_Chr5g0024531 RchiOBHm_Chr5g0053901 RchiOBHm_Chr5g0059111 RchiOBHm_Chr5g0059201 RchiOBHm_Chr5g0059211 RchiOBHm_Chr5g0059291 RchiOBHm_Chr5g0059301 RchiOBHm_Chr5g0059321 RchiOBHm_Chr5g0059551 RchiOBHm_Chr5g0081341 RchiOBHm_Chr7g0211081
rosa_laevigata RLG00000003023 RLG00000017039 RLG00000017135 RLG00000017616 RLG00000017620 RLG00000017621 RLG00000017622 RLG00000017623 RLG00000017624 RLG00000017625 RLG00000017762 RLG00000017763 RLG00000017764 RLG00000017765 RLG00000024443 RLG00000026103 RLG00000031462 RLG00000035283 RLG00000036923 RLG00000036924 RLG00000036925
rosa_multiflora Rmu_co7981142.1_g000001 Rmu_co8037462.1_g000001 Rmu_co8043938.1_g000001 Rmu_co8085092.1_g000001 Rmu_co8243479.1_g000002 Rmu_co8254857.1_g000001 Rmu_co8270991.1_g000001 Rmu_co8304467.1_g000001 Rmu_co8322247.1_g000001 Rmu_sc0000186.1_g000008 Rmu_sc0000375.1_g000022 Rmu_sc0000625.1_g000006 Rmu_sc0001465.1_g000001 Rmu_sc0001484.1_g000034 Rmu_sc0001484.1_g000035 Rmu_sc0001484.1_g000036 Rmu_sc0001484.1_g000038 Rmu_sc0001484.1_g000041 Rmu_sc0001484.1_g000042 Rmu_sc0001793.1_g000054 Rmu_sc0001810.1_g000002 Rmu_sc0001810.1_g000003 Rmu_sc0001810.1_g000004 Rmu_sc0001862.1_g000003 Rmu_sc0002076.1_g000008 Rmu_sc0002076.1_g000009 Rmu_sc0002983.1_g000017 Rmu_sc0002983.1_g000035 Rmu_sc0002983.1_g000038 Rmu_sc0003121.1_g000002 Rmu_sc0003121.1_g000005 Rmu_sc0003121.1_g000006 Rmu_sc0003121.1_g000007 Rmu_sc0003659.1_g000007 Rmu_sc0004524.1_g000009 Rmu_sc0004524.1_g000010 Rmu_sc0004524.1_g000012 Rmu_sc0004650.1_g000003 Rmu_sc0006215.1_g000003 Rmu_sc0006889.1_g000020 Rmu_sc0006889.1_g000030 Rmu_sc0006959.1_g000021 Rmu_sc0007173.1_g000008 Rmu_sc0007698.1_g000019 Rmu_sc0007768.1_g000009 Rmu_sc0008992.1_g000002 Rmu_sc0008992.1_g000004 Rmu_sc0009575.1_g000001 Rmu_sc0009575.1_g000008 Rmu_sc0009650.1_g000002 Rmu_sc0009650.1_g000005 Rmu_sc0009650.1_g000009 Rmu_sc0012421.1_g000005 Rmu_sc0012471.1_g000023 Rmu_sc0012471.1_g000025 Rmu_sc0012670.1_g000002 Rmu_sc0012670.1_g000003 Rmu_sc0016637.1_g000005 Rmu_sc0018174.1_g000002 Rmu_sc0031424.1_g000001 Rmu_ssc0000182.1_g000007 Rmu_ssc0000182.1_g000010 Rmu_ssc0000432.1_g000029 Rmu_ssc0000432.1_g000035 Rmu_ssc0000432.1_g000036 Rmu_ssc0000432.1_g000042
rosa_roxburghii Rroxscaffold_153G00436690 Rroxscaffold_1G00002200 Rroxscaffold_1G00002220 Rroxscaffold_1G00021160 Rroxscaffold_1G00021240 Rroxscaffold_1G00021310 Rroxscaffold_1G00025950 Rroxscaffold_1G00026710 Rroxscaffold_1G00054720 Rroxscaffold_2G00104770 Rroxscaffold_2G00104780 Rroxscaffold_2G00133820 Rroxscaffold_2G00133950 Rroxscaffold_2G00133970 Rroxscaffold_2G00133980 Rroxscaffold_2G00133990 Rroxscaffold_2G00135690 Rroxscaffold_2G00135820 Rroxscaffold_2G00135850 Rroxscaffold_2G00135860 Rroxscaffold_2G00135890 Rroxscaffold_2G00135910 Rroxscaffold_2G00135920 Rroxscaffold_2G00135930 Rroxscaffold_2G00135940 Rroxscaffold_2G00141620 Rroxscaffold_3G00248120 Rroxscaffold_4G00277310 Rroxscaffold_6G00406330 Rroxscaffold_6G00412930 Rroxscaffold_6G00412940 Rroxscaffold_6G00412950 Rroxscaffold_6G00412970 Rroxscaffold_6G00413290
rosa_rugosa Rorug01G0019000 Rorug02G0095500 Rorug02G0095600 Rorug02G0095700 Rorug02G0095800 Rorug02G0095900 Rorug02G0096000 Rorug02G0096100 Rorug02G0096200 Rorug02G0147500 Rorug02G0147600 Rorug02G0147700 Rorug02G0147800 Rorug02G0148100 Rorug02G0148300 Rorug02G0148400 Rorug02G0148500 Rorug02G0148600 Rorug02G0149800 Rorug02G0162500 Rorug02G0162600 Rorug02G0162700 Rorug02G0162800 Rorug02G0510300 Rorug03G0090600 Rorug03G0093700 Rorug03G0093800 Rorug03G0093900 Rorug03G0094000 Rorug03G0148600 Rorug04G0427700 Rorug05G0083700 Rorug05G0321200 Rorug05G0321300 Rorug05G0321400 Rorug05G0321500 Rorug05G0321600 Rorug05G0321900 Rorug05G0322000 Rorug05G0322000 Rorug05G0322300 Rorug05G0475400 Rorug05G0475500 Rorug05G0475600.1 Rorug05G0475700 Rorug05G0475900
rosa_samantha Rh1DG457400 Rh2AG197800 Rh2AG208800 Rh5AG386200 Rh5BG397600 Rh5DG174500 Rh5DG381100 Rh5DG414700 Rh5DG414800 Rh5DG415500 Rh5DG415800
rosa_wichuraiana Rw0G010830 Rw0G010840 Rw0G010870 Rw0G015860 Rw0G015870 Rw1G037410 Rw1G040530 Rw2G011200 Rw2G011230 Rw2G015590 Rw2G015600 Rw2G015610 Rw2G015630 Rw2G015640 Rw2G015660 Rw2G015680 Rw2G015690 Rw3G013400 Rw3G013410 Rw3G018040 Rw5G036340 Rw5G036390 Rw5G049010 Rw5G049020 Rw5G049030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 503
AccB1I GGYRCC 2 cut(s) 182, 195
AccB7I CCANNNNNTGG 1 cut(s) 192
AccI GTMKAC 1 cut(s) 469
AccII CGCG 2 cut(s) 211, 353
AccIII TCCGGA 1 cut(s) 217
AciI CCGC 4 cut(s) 293, 351, 353, 418
AcyI GRCGYC 1 cut(s) 255
AfaI GTAC 1 cut(s) 343
AfiI CCNNNNNNNGG 5 cut(s) 61, 192, 357, 369, 538
AgsI TTSAA 4 cut(s) 27, 173, 376, 455
AjnI CCWGG 1 cut(s) 45
AluBI AGCT 5 cut(s) 111, 191, 285, 412, 552
AluI AGCT 5 cut(s) 111, 191, 285, 412, 552
Ama87I CYCGRG 3 cut(s) 164, 296, 544
Aor13HI TCCGGA 1 cut(s) 217
AoxI GGCC 1 cut(s) 540
Asp700I GAANNNNTTC 1 cut(s) 77
AspS9I GGNCC 1 cut(s) 360
AvaI CYCGRG 3 cut(s) 164, 296, 544
AvaII GGWCC 1 cut(s) 360
BaeGI GKGCMC 1 cut(s) 200
BanI GGYRCC 2 cut(s) 182, 195
BarI GAAGNNNNNNTAC 2 cut(s) 453, 485
BbsI GAAGAC 2 cut(s) 57, 408
BccI CCATC 2 cut(s) 215, 541
BciT130I CCWGG 1 cut(s) 47
BclI TGATCA 1 cut(s) 391
BfuAI ACCTGC 1 cut(s) 503
BisI GCNGC 2 cut(s) 293, 351
BlsI GCNGC 2 cut(s) 294, 352
Bme1390I CCNGG 1 cut(s) 47
Bme18I GGWCC 1 cut(s) 360
BmeT110I CYCGRG 3 cut(s) 164, 296, 544
BmgT120I GGNCC 1 cut(s) 360
BmiI GGNNCC 2 cut(s) 184, 197
BmrFI CCNGG 1 cut(s) 47
BmrI ACTGGG 1 cut(s) 244
BmuI ACTGGG 1 cut(s) 244
BpiI GAAGAC 2 cut(s) 57, 408
BsaHI GRCGYC 1 cut(s) 255
BsaJI CCNNGG 3 cut(s) 45, 351, 543
BsaWI WCCGGW 1 cut(s) 217
Bsc4I CCNNNNNNNGG 5 cut(s) 61, 192, 357, 369, 538
Bse118I RCCGGY 1 cut(s) 362
Bse1I ACTGG 1 cut(s) 239
BseAI TCCGGA 1 cut(s) 217
BseBI CCWGG 1 cut(s) 47
BseDI CCNNGG 3 cut(s) 45, 351, 543
BseGI GGATG 2 cut(s) 214, 226
BseLI CCNNNNNNNGG 5 cut(s) 61, 192, 357, 369, 538
BseNI ACTGG 1 cut(s) 239
BseSI GKGCMC 1 cut(s) 200
Bsh1236I CGCG 2 cut(s) 211, 353
BshFI GGCC 1 cut(s) 542
BshNI GGYRCC 2 cut(s) 182, 195
BsiHKCI CYCGRG 3 cut(s) 164, 296, 544
BsiSI CCGG 2 cut(s) 218, 363
BslI CCNNNNNNNGG 5 cut(s) 61, 192, 357, 369, 538
BsnI GGCC 1 cut(s) 542
BsoBI CYCGRG 3 cut(s) 164, 296, 544
Bsp1286I GDGCHC 1 cut(s) 200
Bsp13I TCCGGA 1 cut(s) 217
Bsp143I GATC 1 cut(s) 391
BspACI CCGC 4 cut(s) 293, 351, 353, 418
BspANI GGCC 1 cut(s) 542
BspEI TCCGGA 1 cut(s) 217
BspFNI CGCG 2 cut(s) 211, 353
BspHI TCATGA 1 cut(s) 240
BspLI GGNNCC 2 cut(s) 184, 197
BspMI ACCTGC 1 cut(s) 503
BspT107I GGYRCC 2 cut(s) 182, 195
BsrFI RCCGGY 1 cut(s) 362
BsrI ACTGG 1 cut(s) 239
BssAI RCCGGY 1 cut(s) 362
BssECI CCNNGG 3 cut(s) 45, 351, 543
BssMI GATC 1 cut(s) 391
BssNI GRCGYC 1 cut(s) 255
Bst2UI CCWGG 1 cut(s) 47
Bst4CI ACNGT 1 cut(s) 346
BstACI GRCGYC 1 cut(s) 255
BstDSI CCRYGG 1 cut(s) 351
BstF5I GGATG 2 cut(s) 214, 226
BstFNI CGCG 2 cut(s) 211, 353
BstKTI GATC 1 cut(s) 394
BstMBI GATC 1 cut(s) 391
BstMWI GCNNNNNNNGC 2 cut(s) 261, 301
BstNI CCWGG 1 cut(s) 47
BstSCI CCNGG 1 cut(s) 45
BstSLI GKGCMC 1 cut(s) 200
BstUI CGCG 2 cut(s) 211, 353
BstV2I GAAGAC 2 cut(s) 57, 408
BsuRI GGCC 1 cut(s) 542
BtgI CCRYGG 1 cut(s) 351
BtsCI GGATG 2 cut(s) 214, 226
BveI ACCTGC 1 cut(s) 503
CciI TCATGA 1 cut(s) 240
Cfr10I RCCGGY 1 cut(s) 362
Cfr13I GGNCC 1 cut(s) 360
Cfr42I CCGCGG 1 cut(s) 354
CseI GACGC 2 cut(s) 200, 244
Csp6I GTAC 1 cut(s) 342
CviAII CATG 2 cut(s) 241, 267
CviJI RGCY 8 cut(s) 111, 191, 264, 285, 292, 412, 542, 552
CviKI_1 RGCY 8 cut(s) 111, 191, 264, 285, 292, 412, 542, 552
CviQI GTAC 1 cut(s) 342
DpnI GATC 1 cut(s) 393
DpnII GATC 1 cut(s) 391
Eco147I AGGCCT 1 cut(s) 542
Eco47I GGWCC 1 cut(s) 360
Eco88I CYCGRG 3 cut(s) 164, 296, 544
EcoRII CCWGG 1 cut(s) 45
FaeI CATG 2 cut(s) 244, 270
FatI CATG 2 cut(s) 240, 266
FbaI TGATCA 1 cut(s) 391
FblI GTMKAC 1 cut(s) 469
Fnu4HI GCNGC 2 cut(s) 293, 351
FokI GGATG 2 cut(s) 201, 233
Fsp4HI GCNGC 2 cut(s) 293, 351
GluI GCNGC 2 cut(s) 293, 351
HaeIII GGCC 1 cut(s) 542
HapII CCGG 2 cut(s) 218, 363
HgaI GACGC 2 cut(s) 200, 244
Hin1I GRCGYC 1 cut(s) 255
Hin1II CATG 2 cut(s) 244, 270
HindIII AAGCTT 1 cut(s) 410
HinfI GANTC 2 cut(s) 92, 126
HpaII CCGG 2 cut(s) 218, 363
Hpy166II GTNNAC 1 cut(s) 470
Hpy188I TCNGA 1 cut(s) 97
Hpy188III TCNNGA 7 cut(s) 40, 218, 241, 315, 495, 518, 546
Hpy8I GTNNAC 1 cut(s) 470
Hpy99I CGWCG 1 cut(s) 260
HpyAV CCTTC 1 cut(s) 532
HpyCH4III ACNGT 1 cut(s) 346
HpyF10VI GCNNNNNNNGC 2 cut(s) 261, 301
Hsp92I GRCGYC 1 cut(s) 255
Hsp92II CATG 2 cut(s) 244, 270
Kpn2I TCCGGA 1 cut(s) 217
Ksp22I TGATCA 1 cut(s) 391
KspI CCGCGG 1 cut(s) 354
Kzo9I GATC 1 cut(s) 391
LpnPI CCDG 7 cut(s) 32, 59, 220, 231, 328, 376, 498
MalI GATC 1 cut(s) 393
MboI GATC 1 cut(s) 391
MboII GAAGA 7 cut(s) 6, 9, 12, 15, 62, 413, 473
MfeI CAATTG 1 cut(s) 144
MhlI GDGCHC 1 cut(s) 200
MluCI AATT 3 cut(s) 27, 144, 320
MnlI CCTC 3 cut(s) 361, 378, 553
MroI TCCGGA 1 cut(s) 217
MroXI GAANNNNTTC 1 cut(s) 77
MseI TTAA 2 cut(s) 287, 429
MslI CAYNNNNRTG 2 cut(s) 219, 446
MspA1I CMGCKG 1 cut(s) 353
MspI CCGG 2 cut(s) 218, 363
MspR9I CCNGG 1 cut(s) 47
MunI CAATTG 1 cut(s) 144
MvaI CCWGG 1 cut(s) 47
MvnI CGCG 2 cut(s) 211, 353
MwoI GCNNNNNNNGC 2 cut(s) 261, 301
NdeII GATC 1 cut(s) 391
NlaIII CATG 2 cut(s) 244, 270
NlaIV GGNNCC 2 cut(s) 184, 197
PagI TCATGA 1 cut(s) 240
PceI AGGCCT 1 cut(s) 542
PdmI GAANNNNTTC 1 cut(s) 77
PfeI GAWTC 2 cut(s) 92, 126
PflFI GACNNNGTC 1 cut(s) 236
PflMI CCANNNNNTGG 1 cut(s) 192
PkrI GCNGC 2 cut(s) 294, 352
Psp6I CCWGG 1 cut(s) 45
PspGI CCWGG 1 cut(s) 45
PspN4I GGNNCC 2 cut(s) 184, 197
PspPI GGNCC 1 cut(s) 360
PsyI GACNNNGTC 1 cut(s) 236
RsaI GTAC 1 cut(s) 343
RsaNI GTAC 1 cut(s) 342
RseI CAYNNNNRTG 2 cut(s) 219, 446
SacII CCGCGG 1 cut(s) 354
SaqAI TTAA 2 cut(s) 287, 429
SatI GCNGC 2 cut(s) 293, 351
Sau3AI GATC 1 cut(s) 391
Sau96I GGNCC 1 cut(s) 360
ScrFI CCNGG 1 cut(s) 47
SduI GDGCHC 1 cut(s) 200
SetI ASST 7 cut(s) 57, 113, 193, 287, 414, 517, 554
Sfr303I CCGCGG 1 cut(s) 354
SgrBI CCGCGG 1 cut(s) 354
SinI GGWCC 1 cut(s) 360
SmiMI CAYNNNNRTG 2 cut(s) 219, 446
Sse9I AATT 3 cut(s) 27, 144, 320
SseBI AGGCCT 1 cut(s) 542
SsiI CCGC 4 cut(s) 293, 351, 353, 418
StuI AGGCCT 1 cut(s) 542
StyD4I CCNGG 1 cut(s) 45
TaaI ACNGT 1 cut(s) 346
TaqI TCGA 2 cut(s) 526, 536
TasI AATT 3 cut(s) 27, 144, 320
TauI GCSGC 2 cut(s) 295, 353
TfiI GAWTC 2 cut(s) 92, 126
Tru1I TTAA 2 cut(s) 287, 429
Tru9I TTAA 2 cut(s) 287, 429
Tth111I GACNNNGTC 1 cut(s) 236
Van91I CCANNNNNTGG 1 cut(s) 192
VpaK11BI GGWCC 1 cut(s) 360
XcmI CCANNNNNNNNNTGG 1 cut(s) 322
XmiI GTMKAC 1 cut(s) 469
XmnI GAANNNNTTC 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.