Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0007417

Physical Location & Seq

Genomic Coordinates Reverse (-)

10500648 .. 10505277

Gene Structure 4630 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g18070.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGGTCCAAGTTTTGACCGATCTTGATCTTGTTATTTCCAAATCTTATATTTCCTCTGATGGTGGATGGTTCATGGATGTGTTCCATGTGACGGATCAACTCGGCAACAAAGTCACTGACGAGAGCATCATACTTTATATTCAGCAGGCACTTTGTGCTAGGAGGGGAGGGATTACTAAGGAGGCAAGAACATGCTTAGGAAAAGAAGTGGCACCGGGAGTGAAAGATTTAGCCCTAGAAATGACCACCAAGGATCGACCGGGGTTAATGTCTGAGATATCTGCGGTCCTCGTTGAGCTCGGCTGCAACATTACTGCAGCCGTAACTTGGACCCACAGCTCCCGAACAGCGAGTATCTTCTATGTCGAAGATGGGTTGAAAGGAGGGCCTATTATGGACCCAATAAGGCTATCAAATGTACAAGAGCAGCTAGAAAATGTGATTGAAGCCCATCACGAGAAGGGCGAGAAGAGGAGTGTGAGGCTGACCACCCCCGCGGCGGGCCGGACCCACACGGAGCGGCGGCTCCACCAGTTGATGTACGGGGACGATGACTACGAGATGTGTCGGGGCTGCGATGGCGGTGATAAAGGACACAAGAAGGGTTGTGACCGAACCCATGTGTCGATAGAGAGTTGCAAGGAGAAAGGGTACTGGATTGTTAATGTAAGATGCAGAGATCGTCCTAAGCTGTTGTTTGACACAGTTTGTGCTCTCACTGACTTGCAATATGTTGTGTTCCATGCTCTGGTTTCTTCCAGGGGCACCATGGCTGATCAGGAATATTTTGTGAGGCACAAAGATGGCTACACTTTGAACGCAGAAAGTGAAAGGCACAAGCTCACTCTATGTTTAGTTGCTGCAATAGAGAGAAGGATCTCACAAGGATTGAGACTTGACATCTGCGCCAAAAACCGGATGGGACTACTATCTGACATCACAAGGGTTTTCCGAGAGAGTGGTTTATCAATAACAAGAGCCGAGATCGGAACATATGGCGAGAGAGCCGTGGGATCAATTTATGTGACAGATACTTCAGGTCACGATGTGAATCTGAACCTAGTGGAATCGGTGAGAAAGGAGGTTGGAGGATCTGTGATTGCAGTTCACAAACCACAGACTTGGGCTGCTCATGGTGGTTCTTCAAGGACAAGCCGAAGAGTACCAAACACAAGAGTAGAAGATGAAGAAGATAGACCAAGATTGTCATTTGGAAGTTTGGTCTGGTCTCAACTGGAGCGCCTTTCAAGCAGCTTTGGACCCATTAGATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0016597 GO:0031406 GO:0036094 GO:0043167 GO:0043168 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACT ACT_6

Protein Analysis

425

Amino Acids

47.23

Weight (kDa)

7.21

Isoelectric Point (pI)

39.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ACT	PF01842	130 - 176	8.9e-07	ACT domain
ACT	PF01842	351 - 412	5.6e-08	ACT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65890 AT5G65890 AT5G65890 AT5G65890 AT5G65890
fragaria_vesca	FvH4_1g18070 FvH4_1g18070 FvH4_1g18070 FvH4_1g18070
malus_domestica	MD02G1188900.v1.1
prunus_persica	Prupe.6G217800_v2.0.a1 Prupe.6G217800_v2.0.a1 Prupe.6G217800_v2.0.a1
pyrus_communis	pycom02g15330
rosa_chinensis	RchiOBHm_Chr2g0108541
rosa_laevigata	RLG00000017677
rosa_multiflora	Rmu_sc0007574.1_g000011
rosa_roxburghii	Rroxscaffold_2G00135040
rosa_rugosa	Rorug02G0154200 Rorug02G0154300
rosa_samantha	Rh2AG203100 Rh2BG216100 Rh2CG207100 Rh2DG210300
rosa_wichuraiana	Rw2G016230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	211, 764
AccB7I	CCANNNNNTGG	1 cut(s)	748
AccBSI	CCGCTC	1 cut(s)	520
AccII	CGCG	1 cut(s)	497
AciI	CCGC	7 cut(s)	284, 495, 497, 500, 520, 523, 582
AclWI	GGATC	5 cut(s)	102, 261, 884, 1021, 1099
AcuI	CTGAAG	1 cut(s)	1020
AdeI	CACNNNGTG	2 cut(s)	155, 1048
AfaI	GTAC	4 cut(s)	420, 542, 653, 1164
AfiI	CCNNNNNNNGG	6 cut(s)	91, 327, 499, 500, 748, 915
AgsI	TTSAA	5 cut(s)	379, 446, 817, 1146, 1248
AjnI	CCWGG	1 cut(s)	758
AluBI	AGCT	6 cut(s)	298, 339, 430, 691, 841, 1254
AluI	AGCT	6 cut(s)	298, 339, 430, 691, 841, 1254
Alw21I	GWGCWC	2 cut(s)	300, 715
Alw26I	GTCTC	2 cut(s)	886, 1233
AlwI	GGATC	5 cut(s)	102, 261, 884, 1021, 1099
AoxI	GGCC	2 cut(s)	386, 502
ApeKI	GCWGC	7 cut(s)	303, 317, 427, 573, 860, 1127, 1251
AspLEI	GCGC	2 cut(s)	908, 1242
AspS9I	GGNCC	8 cut(s)	4, 286, 330, 386, 397, 502, 507, 1259
AsuC2I	CCSGG	2 cut(s)	216, 261
AsuHPI	GGTGA	2 cut(s)	596, 1084
AvaII	GGWCC	6 cut(s)	4, 286, 330, 397, 507, 1259
BaeGI	GKGCMC	1 cut(s)	767
BanI	GGYRCC	2 cut(s)	211, 764
BanII	GRGCYC	1 cut(s)	300
BauI	CACGAG	1 cut(s)	455
Bbv12I	GWGCWC	2 cut(s)	300, 715
BbvI	GCAGC	7 cut(s)	290, 329, 439, 560, 847, 1114, 1263
BccI	CCATC	7 cut(s)	53, 60, 365, 459, 572, 797, 913
BceAI	ACGGC	2 cut(s)	305, 992
BciT130I	CCWGG	1 cut(s)	760
BclI	TGATCA	1 cut(s)	775
BcnI	CCSGG	2 cut(s)	216, 261
BcoDI	GTCTC	2 cut(s)	886, 1233
BfaI	CTAG	4 cut(s)	159, 236, 431, 1061
BfmI	CTRYAG	1 cut(s)	315
BfoI	RGCGCY	1 cut(s)	1243
Bme1390I	CCNGG	3 cut(s)	216, 261, 760
Bme18I	GGWCC	6 cut(s)	4, 286, 330, 397, 507, 1259
BmgT120I	GGNCC	8 cut(s)	4, 286, 330, 386, 397, 502, 507, 1259
BmiI	GGNNCC	7 cut(s)	213, 332, 399, 509, 527, 766, 1261
BmrFI	CCNGG	3 cut(s)	216, 261, 760
BmsI	GCATC	2 cut(s)	135, 662
BpmI	CTGGAG	1 cut(s)	1256
Bpu10I	CCTNAGC	2 cut(s)	196, 687
BpuMI	CCSGG	2 cut(s)	216, 261
BsaBI	GATNNNNATC	2 cut(s)	24, 1050
BsaI	GGTCTC	1 cut(s)	1233
BsaJI	CCNNGG	6 cut(s)	249, 260, 495, 759, 768, 1008
BsaWI	WCCGGW	1 cut(s)	915
BsaXI	ACNNNNNCTCC	4 cut(s)	635, 665, 1080, 1110
Bsc4I	CCNNNNNNNGG	6 cut(s)	91, 327, 499, 500, 748, 915
Bse1I	ACTGG	3 cut(s)	532, 659, 1239
Bse8I	GATNNNNATC	2 cut(s)	24, 1050
BseBI	CCWGG	1 cut(s)	760
BseDI	CCNNGG	6 cut(s)	249, 260, 495, 759, 768, 1008
BseGI	GGATG	3 cut(s)	71, 82, 924
BseJI	GATNNNNATC	2 cut(s)	24, 1050
BseLI	CCNNNNNNNGG	6 cut(s)	91, 327, 499, 500, 748, 915
BseMII	CTCAG	1 cut(s)	264
BseNI	ACTGG	3 cut(s)	532, 659, 1239
BseRI	GAGGAG	1 cut(s)	487
BseSI	GKGCMC	1 cut(s)	767
BseXI	GCAGC	7 cut(s)	290, 329, 439, 560, 847, 1114, 1263
Bsh1236I	CGCG	1 cut(s)	497
Bsh1285I	CGRYCG	1 cut(s)	260
BshFI	GGCC	2 cut(s)	388, 504
BshNI	GGYRCC	2 cut(s)	211, 764
BsiEI	CGRYCG	1 cut(s)	260
BsiHKAI	GWGCWC	2 cut(s)	300, 715
BsiSI	CCGG	4 cut(s)	215, 260, 505, 916
BslFI	GGGAC	2 cut(s)	560, 936
BslI	CCNNNNNNNGG	6 cut(s)	91, 327, 499, 500, 748, 915
BsmAI	GTCTC	2 cut(s)	886, 1233
BsmFI	GGGAC	2 cut(s)	560, 936
BsnI	GGCC	2 cut(s)	388, 504
Bso31I	GGTCTC	1 cut(s)	1233
Bsp1286I	GDGCHC	3 cut(s)	300, 715, 767
Bsp1407I	TGTACA	1 cut(s)	418
Bsp19I	CCATGG	1 cut(s)	768
BspACI	CCGC	7 cut(s)	284, 495, 497, 500, 520, 523, 582
BspANI	GGCC	2 cut(s)	388, 504
BspCNI	CTCAG	1 cut(s)	265
BspFNI	CGCG	1 cut(s)	497
BspLI	GGNNCC	7 cut(s)	213, 332, 399, 509, 527, 766, 1261
BspMAI	CTGCAG	1 cut(s)	319
BspPI	GGATC	5 cut(s)	102, 261, 884, 1021, 1099
BspT107I	GGYRCC	2 cut(s)	211, 764
BspTNI	GGTCTC	1 cut(s)	1233
BsrBI	CCGCTC	1 cut(s)	520
BsrGI	TGTACA	1 cut(s)	418
BsrI	ACTGG	3 cut(s)	532, 659, 1239
BssECI	CCNNGG	6 cut(s)	249, 260, 495, 759, 768, 1008
BssSI	CACGAG	1 cut(s)	455
BssT1I	CCWWGG	2 cut(s)	249, 768
Bst2BI	CACGAG	1 cut(s)	455
Bst2UI	CCWGG	1 cut(s)	760
Bst4CI	ACNGT	1 cut(s)	706
Bst6I	CTCTTC	2 cut(s)	464, 1153
BstAPI	GCANNNNNTGC	1 cut(s)	155
BstAUI	TGTACA	1 cut(s)	418
BstC8I	GCNNGC	2 cut(s)	147, 502
BstDEI	CTNAG	4 cut(s)	177, 196, 273, 687
BstDSI	CCRYGG	3 cut(s)	495, 768, 1008
BstF5I	GGATG	3 cut(s)	71, 82, 924
BstFNI	CGCG	1 cut(s)	497
BstH2I	RGCGCY	1 cut(s)	1243
BstHHI	GCGC	2 cut(s)	908, 1242
BstMAI	GTCTC	2 cut(s)	886, 1233
BstMCI	CGRYCG	1 cut(s)	260
BstMWI	GCNNNNNNNGC	3 cut(s)	155, 579, 1248
BstNI	CCWGG	1 cut(s)	760
BstNSI	RCATGY	1 cut(s)	195
BstSCI	CCNGG	3 cut(s)	214, 259, 758
BstSFI	CTRYAG	1 cut(s)	315
BstSLI	GKGCMC	1 cut(s)	767
BstUI	CGCG	1 cut(s)	497
BstV1I	GCAGC	7 cut(s)	290, 329, 439, 560, 847, 1114, 1263
BstX2I	RGATCY	2 cut(s)	876, 1091
BstXI	CCANNNNNNTGG	1 cut(s)	1122
BstYI	RGATCY	2 cut(s)	876, 1091
BsuRI	GGCC	2 cut(s)	388, 504
BtgI	CCRYGG	3 cut(s)	495, 768, 1008
BtgZI	GCGATG	1 cut(s)	591
BtsCI	GGATG	3 cut(s)	71, 82, 924
BtsIMutI	CAGTG	2 cut(s)	114, 717
Cac8I	GCNNGC	2 cut(s)	147, 502
CfoI	GCGC	2 cut(s)	908, 1242
Cfr13I	GGNCC	8 cut(s)	4, 286, 330, 386, 397, 502, 507, 1259
Cfr42I	CCGCGG	1 cut(s)	498
Csp6I	GTAC	4 cut(s)	419, 541, 652, 1163
CviAII	CATG	7 cut(s)	73, 86, 192, 620, 743, 769, 1133
CviQI	GTAC	4 cut(s)	419, 541, 652, 1163
DdeI	CTNAG	4 cut(s)	177, 196, 273, 687
DraIII	CACNNNGTG	2 cut(s)	155, 1048
Eam1104I	CTCTTC	2 cut(s)	464, 1153
EarI	CTCTTC	2 cut(s)	464, 1153
Ecl136II	GAGCTC	1 cut(s)	298
Eco130I	CCWWGG	2 cut(s)	249, 768
Eco24I	GRGCYC	1 cut(s)	300
Eco31I	GGTCTC	1 cut(s)	1233
Eco32I	GATATC	1 cut(s)	279
Eco47I	GGWCC	6 cut(s)	4, 286, 330, 397, 507, 1259
Eco53kI	GAGCTC	1 cut(s)	298
Eco57I	CTGAAG	1 cut(s)	1020
EcoICRI	GAGCTC	1 cut(s)	298
EcoO109I	RGGNCCY	1 cut(s)	386
EcoRII	CCWGG	1 cut(s)	758
EcoRV	GATATC	1 cut(s)	279
EcoT14I	CCWWGG	2 cut(s)	249, 768
EcoT38I	GRGCYC	1 cut(s)	300
ErhI	CCWWGG	2 cut(s)	249, 768
FaeI	CATG	7 cut(s)	76, 89, 195, 623, 746, 772, 1136
FaqI	GGGAC	2 cut(s)	560, 936
FatI	CATG	7 cut(s)	72, 85, 191, 619, 742, 768, 1132
FauI	CCCGC	2 cut(s)	493, 502
FauNDI	CATATG	1 cut(s)	994
FbaI	TGATCA	1 cut(s)	775
FokI	GGATG	3 cut(s)	78, 89, 931
FriOI	GRGCYC	1 cut(s)	300
FspBI	CTAG	4 cut(s)	159, 236, 431, 1061
GlaI	GCGC	2 cut(s)	907, 1241
GsuI	CTGGAG	1 cut(s)	1256
HaeII	RGCGCY	1 cut(s)	1243
HaeIII	GGCC	2 cut(s)	388, 504
HapII	CCGG	4 cut(s)	215, 260, 505, 916
HhaI	GCGC	2 cut(s)	908, 1242
Hin1II	CATG	7 cut(s)	76, 89, 195, 623, 746, 772, 1136
Hin6I	GCGC	2 cut(s)	906, 1240
HinP1I	GCGC	2 cut(s)	906, 1240
HinfI	GANTC	2 cut(s)	1051, 1067
HpaII	CCGG	4 cut(s)	215, 260, 505, 916
HphI	GGTGA	2 cut(s)	596, 1084
Hpy166II	GTNNAC	1 cut(s)	1108
Hpy188I	TCNGA	6 cut(s)	58, 274, 934, 953, 989, 1056
Hpy188III	TCNNGA	5 cut(s)	23, 342, 455, 779, 1043
Hpy8I	GTNNAC	1 cut(s)	1108
HpyAV	CCTTC	3 cut(s)	454, 595, 867
HpyCH4III	ACNGT	1 cut(s)	706
HpyCH4V	TGCA	7 cut(s)	306, 317, 639, 675, 727, 863, 1103
HpyF10VI	GCNNNNNNNGC	3 cut(s)	155, 579, 1248
HpyF3I	CTNAG	4 cut(s)	177, 196, 273, 687
Hsp92II	CATG	7 cut(s)	76, 89, 195, 623, 746, 772, 1136
HspAI	GCGC	2 cut(s)	906, 1240
Ksp22I	TGATCA	1 cut(s)	775
KspI	CCGCGG	1 cut(s)	498
LmnI	GCTCC	4 cut(s)	344, 517, 531, 1237
Lsp1109I	GCAGC	7 cut(s)	290, 329, 439, 560, 847, 1114, 1263
LweI	GCATC	2 cut(s)	135, 662
MaeI	CTAG	4 cut(s)	159, 236, 431, 1061
MaeIII	GTNAC	6 cut(s)	88, 112, 322, 608, 1024, 1040
MbiI	CCGCTC	1 cut(s)	520
MboII	GAAGA	9 cut(s)	349, 380, 481, 747, 1134, 1170, 1193, 1199, 1202
MflI	RGATCY	2 cut(s)	876, 1091
MhlI	GDGCHC	3 cut(s)	300, 715, 767
MluCI	AATT	1 cut(s)	1017
MmeI	TCCRAC	1 cut(s)	1066
MseI	TTAA	2 cut(s)	266, 663
MslI	CAYNNNNRTG	2 cut(s)	77, 801
MspA1I	CMGCKG	1 cut(s)	497
MspI	CCGG	4 cut(s)	215, 260, 505, 916
MspR9I	CCNGG	3 cut(s)	216, 261, 760
MvaI	CCWGG	1 cut(s)	760
MvnI	CGCG	1 cut(s)	497
MwoI	GCNNNNNNNGC	3 cut(s)	155, 579, 1248
NciI	CCSGG	2 cut(s)	216, 261
NcoI	CCATGG	1 cut(s)	768
NdeI	CATATG	1 cut(s)	994
NlaIII	CATG	7 cut(s)	76, 89, 195, 623, 746, 772, 1136
NlaIV	GGNNCC	7 cut(s)	213, 332, 399, 509, 527, 766, 1261
NmeAIII	GCCGAG	3 cut(s)	81, 279, 1006
NmuCI	GTSAC	5 cut(s)	88, 112, 608, 1024, 1040
NspI	RCATGY	1 cut(s)	195
PcsI	WCGNNNNNNNCGW	2 cut(s)	462, 555
PfeI	GAWTC	2 cut(s)	1051, 1067
PflMI	CCANNNNNTGG	1 cut(s)	748
Psp124BI	GAGCTC	1 cut(s)	300
Psp6I	CCWGG	1 cut(s)	758
PspGI	CCWGG	1 cut(s)	758
PspN4I	GGNNCC	7 cut(s)	213, 332, 399, 509, 527, 766, 1261
PspPI	GGNCC	8 cut(s)	4, 286, 330, 386, 397, 502, 507, 1259
PstI	CTGCAG	1 cut(s)	319
PsuI	RGATCY	2 cut(s)	876, 1091
RsaI	GTAC	4 cut(s)	420, 542, 653, 1164
RsaNI	GTAC	4 cut(s)	419, 541, 652, 1163
RseI	CAYNNNNRTG	2 cut(s)	77, 801
SacI	GAGCTC	1 cut(s)	300
SacII	CCGCGG	1 cut(s)	498
SaqAI	TTAA	2 cut(s)	266, 663
Sau96I	GGNCC	8 cut(s)	4, 286, 330, 386, 397, 502, 507, 1259
ScrFI	CCNGG	3 cut(s)	216, 261, 760
SduI	GDGCHC	3 cut(s)	300, 715, 767
SetI	ASST	9 cut(s)	300, 341, 432, 693, 843, 1042, 1062, 1086, 1256
SfaNI	GCATC	2 cut(s)	135, 662
SfcI	CTRYAG	1 cut(s)	315
Sfr303I	CCGCGG	1 cut(s)	498
SgrBI	CCGCGG	1 cut(s)	498
SinI	GGWCC	6 cut(s)	4, 286, 330, 397, 507, 1259
SmiMI	CAYNNNNRTG	2 cut(s)	77, 801
Sse9I	AATT	1 cut(s)	1017
SsiI	CCGC	7 cut(s)	284, 495, 497, 500, 520, 523, 582
SspI	AATATT	1 cut(s)	785
SspMI	CTAG	4 cut(s)	159, 236, 431, 1061
SstI	GAGCTC	1 cut(s)	300
StyD4I	CCNGG	3 cut(s)	214, 259, 758
StyI	CCWWGG	2 cut(s)	249, 768
TaaI	ACNGT	1 cut(s)	706
TaqI	TCGA	3 cut(s)	256, 366, 626
TaqII	GACCGA	2 cut(s)	32, 627
TasI	AATT	1 cut(s)	1017
TatI	WGTACW	1 cut(s)	418
TauI	GCSGC	3 cut(s)	500, 523, 526
TfiI	GAWTC	2 cut(s)	1051, 1067
Tru1I	TTAA	2 cut(s)	266, 663
Tru9I	TTAA	2 cut(s)	266, 663
TscAI	CASTG	2 cut(s)	121, 724
TseFI	GTSAC	5 cut(s)	88, 112, 608, 1024, 1040
TseI	GCWGC	7 cut(s)	303, 317, 427, 573, 860, 1127, 1251
Tsp45I	GTSAC	5 cut(s)	88, 112, 608, 1024, 1040
TspDTI	ATGAA	2 cut(s)	61, 1200
TspGWI	ACGGA	2 cut(s)	107, 530
TspRI	CASTG	2 cut(s)	121, 724
Van91I	CCANNNNNTGG	1 cut(s)	748
VpaK11BI	GGWCC	6 cut(s)	4, 286, 330, 397, 507, 1259
XceI	RCATGY	1 cut(s)	195
XcmI	CCANNNNNNNNNTGG	2 cut(s)	766, 916
XspI	CTAG	4 cut(s)	159, 236, 431, 1061

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.