Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007574.1

Orthogroup ID

OG0007417

Physical Location & Seq

Genomic Coordinates Forward (+)

75144 .. 79071

Gene Structure 3928 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007574.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1389 bp

atgacctgtcctccagatatctacggcaagatcatgattcttgaccttatcacccaaagtccattgcacagacttgttcaggttgacagtgcaaacaagcacgggattttactggagatggtccaagttttgacagatcttgatcttgttatttccaaatcttatatctcctctgacggtggatggtttatggatgtgttccatgtgacggatcaactcggcaacaaaatcactgacgagagcatcatactttacattcagcaggcactttgtgctaaaaggggagtgattgcaaaagaggcaagactatgcttaggaaaagaagtggcaccgggagcgaaagatttagccctagaaatgactaccaaggaccgaccgggcttaatgtccgagatctccgcggtcctggttgagctcggctgcaacataactgctgctgtggcttggacccacagcacccgagcggcgagtatcttctatgtcgaagatgggctggacggagggcccatcacggacccaatacggctagcaaatgtccaagagcagctagaaaatgtaattgaagcccatcacgaggagggcgagaagaggagtgtgaggctgactacccccgcggtcggacgcacccacacagagcggcggctccaccaattgatgtacggggacgatgactacgagatgtgtcggggttgcgatggcggcgataaaggacacaagaagggttgtgatcgaacccatgtgtcgatagagagttgcaaggagaaggggtattggattgtcaatgtaagaagcaaagaccgtcctaagctgctgtttgacacagtctgtgctctcactgacttggaatacgttgtgttccatgctctggtttcttccaggggcaccatggctgatcaggaatattttgtaaggcacaaggatggctacactttgaacgcagagagtgaaaggcaaaagctcactctatgtttagttgctgcaatagagagaaggatctcagaaggattgagacttgacctctgtgccaaaaaccggatgggactattatcagacatcacaagggttttccgagagagtggtttatcaatatcaagagtcgatgttggaacatatggtgagagagcagtgggatcaatctatgtcacagatgcttcaggtcacgatgtgaatctgaacacagtggaattggtgacaaaggagattggaggatctgccattgcggttcacaaatcacagaagtgggctgctcatggttcttcatcaaggacaagccagagagtaccaaacacgagagtagaagatgaaggaaaaccaagaccgtcatttggaagtttgctctgggctcaactggagcgcctttcaagcagctttggacccattaaatcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0016597 GO:0031406 GO:0036094 GO:0043167 GO:0043168 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACT ACT_6

Protein Analysis

462

Amino Acids

51.07

Weight (kDa)

6.22

Isoelectric Point (pI)

37.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65890 AT5G65890 AT5G65890 AT5G65890 AT5G65890
fragaria_vesca	FvH4_1g18070 FvH4_1g18070 FvH4_1g18070 FvH4_1g18070
malus_domestica	MD02G1188900.v1.1
prunus_persica	Prupe.6G217800_v2.0.a1 Prupe.6G217800_v2.0.a1 Prupe.6G217800_v2.0.a1
pyrus_communis	pycom02g15330
rosa_chinensis	RchiOBHm_Chr2g0108541
rosa_laevigata	RLG00000017677
rosa_multiflora	Rmu_sc0007574.1_g000011
rosa_roxburghii	Rroxscaffold_2G00135040
rosa_rugosa	Rorug02G0154200 Rorug02G0154300
rosa_samantha	Rh2AG203100 Rh2BG216100 Rh2CG207100 Rh2DG210300
rosa_wichuraiana	Rw2G016230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	328, 881
AccB7I	CCANNNNNTGG	1 cut(s)	865
AccBSI	CCGCTC	2 cut(s)	464, 637
AccII	CGCG	2 cut(s)	401, 614
AciI	CCGC	9 cut(s)	399, 401, 464, 612, 614, 637, 640, 699, 1220
AclWI	GGATC	4 cut(s)	219, 1001, 1138, 1216
AcuI	CTGAAG	1 cut(s)	1137
AdeI	CACNNNGTG	2 cut(s)	272, 1165
AfaI	GTAC	2 cut(s)	659, 1281
AfiI	CCNNNNNNNGG	6 cut(s)	208, 574, 617, 865, 1032, 1325
AgsI	TTSAA	3 cut(s)	563, 934, 1362
AjnI	CCWGG	2 cut(s)	405, 875
AleI	CACNNNNGTG	1 cut(s)	1237
AluBI	AGCT	5 cut(s)	415, 547, 808, 958, 1368
AluI	AGCT	5 cut(s)	415, 547, 808, 958, 1368
Alw21I	GWGCWC	2 cut(s)	417, 832
Alw26I	GTCTC	1 cut(s)	1003
AlwI	GGATC	4 cut(s)	219, 1001, 1138, 1216
Ama87I	CYCGRG	1 cut(s)	459
AoxI	GGCC	1 cut(s)	503
ApaI	GGGCCC	1 cut(s)	507
ApeKI	GCWGC	7 cut(s)	420, 434, 544, 808, 977, 1244, 1365
AspLEI	GCGC	1 cut(s)	1356
AspS9I	GGNCC	8 cut(s)	121, 370, 403, 447, 503, 504, 514, 1373
AsuC2I	CCSGG	2 cut(s)	333, 378
AsuHPI	GGTGA	3 cut(s)	43, 1127, 1201
AsuNHI	GCTAGC	1 cut(s)	526
AvaI	CYCGRG	1 cut(s)	459
AvaII	GGWCC	6 cut(s)	121, 370, 403, 447, 514, 1373
BaeGI	GKGCMC	2 cut(s)	507, 884
BanI	GGYRCC	2 cut(s)	328, 881
BanII	GRGCYC	3 cut(s)	417, 507, 1345
BauI	CACGAG	2 cut(s)	572, 1288
Bbv12I	GWGCWC	2 cut(s)	417, 832
BbvI	GCAGC	7 cut(s)	407, 421, 556, 795, 964, 1231, 1377
BccI	CCATC	8 cut(s)	112, 177, 482, 515, 576, 689, 914, 1030
BceAI	ACGGC	2 cut(s)	40, 539
BciT130I	CCWGG	2 cut(s)	407, 877
BclI	TGATCA	1 cut(s)	892
BcnI	CCSGG	2 cut(s)	333, 378
BcoDI	GTCTC	1 cut(s)	1003
BfaI	CTAG	3 cut(s)	353, 527, 548
BfoI	RGCGCY	1 cut(s)	1357
BglII	AGATCT	2 cut(s)	136, 393
Bme1390I	CCNGG	4 cut(s)	333, 378, 407, 877
Bme18I	GGWCC	6 cut(s)	121, 370, 403, 447, 514, 1373
BmeT110I	CYCGRG	1 cut(s)	459
BmgT120I	GGNCC	8 cut(s)	121, 370, 403, 447, 503, 504, 514, 1373
BmiI	GGNNCC	7 cut(s)	330, 449, 505, 516, 644, 883, 1375
BmrFI	CCNGG	4 cut(s)	333, 378, 407, 877
BmsI	GCATC	2 cut(s)	252, 1138
BmtI	GCTAGC	1 cut(s)	530
BpmI	CTGGAG	2 cut(s)	134, 1370
Bpu10I	CCTNAGC	2 cut(s)	313, 804
BpuMI	CCSGG	2 cut(s)	333, 378
BsaBI	GATNNNNATC	2 cut(s)	141, 1167
BsaJI	CCNNGG	5 cut(s)	366, 399, 612, 876, 885
BsaWI	WCCGGW	1 cut(s)	1032
BsaXI	ACNNNNNCTCC	3 cut(s)	25, 752, 782
Bsc4I	CCNNNNNNNGG	6 cut(s)	208, 574, 617, 865, 1032, 1325
Bse1I	ACTGG	2 cut(s)	117, 1353
Bse3DI	GCAATG	2 cut(s)	62, 1215
Bse8I	GATNNNNATC	2 cut(s)	141, 1167
BseBI	CCWGG	2 cut(s)	407, 877
BseDI	CCNNGG	5 cut(s)	366, 399, 612, 876, 885
BseGI	GGATG	4 cut(s)	188, 199, 925, 1041
BseJI	GATNNNNATC	2 cut(s)	141, 1167
BseLI	CCNNNNNNNGG	6 cut(s)	208, 574, 617, 865, 1032, 1325
BseMI	GCAATG	2 cut(s)	62, 1215
BseMII	CTCAG	1 cut(s)	1011
BseNI	ACTGG	2 cut(s)	117, 1353
BseRI	GAGGAG	3 cut(s)	160, 590, 604
BseSI	GKGCMC	2 cut(s)	507, 884
BseXI	GCAGC	7 cut(s)	407, 421, 556, 795, 964, 1231, 1377
Bsh1236I	CGCG	2 cut(s)	401, 614
Bsh1285I	CGRYCG	2 cut(s)	377, 618
BshFI	GGCC	1 cut(s)	505
BshNI	GGYRCC	2 cut(s)	328, 881
BsiEI	CGRYCG	2 cut(s)	377, 618
BsiHKAI	GWGCWC	2 cut(s)	417, 832
BsiHKCI	CYCGRG	1 cut(s)	459
BsiSI	CCGG	3 cut(s)	332, 377, 1033
BslFI	GGGAC	2 cut(s)	677, 1053
BslI	CCNNNNNNNGG	6 cut(s)	208, 574, 617, 865, 1032, 1325
BsmAI	GTCTC	1 cut(s)	1003
BsmFI	GGGAC	2 cut(s)	677, 1053
BsnI	GGCC	1 cut(s)	505
BsoBI	CYCGRG	1 cut(s)	459
Bsp120I	GGGCCC	1 cut(s)	503
Bsp1286I	GDGCHC	5 cut(s)	417, 507, 832, 884, 1345
Bsp19I	CCATGG	1 cut(s)	885
BspACI	CCGC	9 cut(s)	399, 401, 464, 612, 614, 637, 640, 699, 1220
BspANI	GGCC	1 cut(s)	505
BspCNI	CTCAG	1 cut(s)	1010
BspFNI	CGCG	2 cut(s)	401, 614
BspHI	TCATGA	1 cut(s)	33
BspLI	GGNNCC	7 cut(s)	330, 449, 505, 516, 644, 883, 1375
BspOI	GCTAGC	1 cut(s)	530
BspPI	GGATC	4 cut(s)	219, 1001, 1138, 1216
BspT107I	GGYRCC	2 cut(s)	328, 881
BsrBI	CCGCTC	2 cut(s)	464, 637
BsrDI	GCAATG	2 cut(s)	62, 1215
BsrI	ACTGG	2 cut(s)	117, 1353
BssECI	CCNNGG	5 cut(s)	366, 399, 612, 876, 885
BssSI	CACGAG	2 cut(s)	572, 1288
BssT1I	CCWWGG	2 cut(s)	366, 885
Bst2BI	CACGAG	2 cut(s)	572, 1288
Bst2UI	CCWGG	2 cut(s)	407, 877
Bst4CI	ACNGT	6 cut(s)	89, 179, 800, 823, 1180, 1320
Bst6I	CTCTTC	1 cut(s)	581
BstAPI	GCANNNNNTGC	1 cut(s)	272
BstC8I	GCNNGC	2 cut(s)	264, 528
BstDEI	CTNAG	3 cut(s)	313, 804, 997
BstDSI	CCRYGG	3 cut(s)	399, 612, 885
BstF5I	GGATG	4 cut(s)	188, 199, 925, 1041
BstFNI	CGCG	2 cut(s)	401, 614
BstH2I	RGCGCY	1 cut(s)	1357
BstHHI	GCGC	1 cut(s)	1356
BstMAI	GTCTC	1 cut(s)	1003
BstMCI	CGRYCG	2 cut(s)	377, 618
BstMWI	GCNNNNNNNGC	6 cut(s)	272, 299, 335, 440, 699, 1362
BstNI	CCWGG	2 cut(s)	407, 877
BstSCI	CCNGG	4 cut(s)	331, 376, 405, 875
BstSLI	GKGCMC	2 cut(s)	507, 884
BstUI	CGCG	2 cut(s)	401, 614
BstV1I	GCAGC	7 cut(s)	407, 421, 556, 795, 964, 1231, 1377
BstX2I	RGATCY	4 cut(s)	136, 393, 993, 1208
BstYI	RGATCY	4 cut(s)	136, 393, 993, 1208
BsuRI	GGCC	1 cut(s)	505
BtgI	CCRYGG	3 cut(s)	399, 612, 885
BtgZI	GCGATG	1 cut(s)	708
BtsCI	GGATG	4 cut(s)	188, 199, 925, 1041
BtsI	GCAGTG	1 cut(s)	1131
BtsIMutI	CAGTG	5 cut(s)	94, 231, 834, 1131, 1185
Cac8I	GCNNGC	2 cut(s)	264, 528
CciI	TCATGA	1 cut(s)	33
CfoI	GCGC	1 cut(s)	1356
Cfr13I	GGNCC	8 cut(s)	121, 370, 403, 447, 503, 504, 514, 1373
Cfr42I	CCGCGG	2 cut(s)	402, 615
CseI	GACGC	1 cut(s)	630
Csp6I	GTAC	2 cut(s)	658, 1280
CviAII	CATG	6 cut(s)	34, 203, 737, 860, 886, 1250
CviQI	GTAC	2 cut(s)	658, 1280
DdeI	CTNAG	3 cut(s)	313, 804, 997
DraIII	CACNNNGTG	2 cut(s)	272, 1165
Eam1104I	CTCTTC	1 cut(s)	581
EarI	CTCTTC	1 cut(s)	581
Ecl136II	GAGCTC	1 cut(s)	415
Eco130I	CCWWGG	2 cut(s)	366, 885
Eco24I	GRGCYC	3 cut(s)	417, 507, 1345
Eco32I	GATATC	1 cut(s)	19
Eco47I	GGWCC	6 cut(s)	121, 370, 403, 447, 514, 1373
Eco53kI	GAGCTC	1 cut(s)	415
Eco57I	CTGAAG	1 cut(s)	1137
Eco88I	CYCGRG	1 cut(s)	459
EcoICRI	GAGCTC	1 cut(s)	415
EcoO109I	RGGNCCY	1 cut(s)	503
EcoRII	CCWGG	2 cut(s)	405, 875
EcoRV	GATATC	1 cut(s)	19
EcoT14I	CCWWGG	2 cut(s)	366, 885
EcoT38I	GRGCYC	3 cut(s)	417, 507, 1345
ErhI	CCWWGG	2 cut(s)	366, 885
FaeI	CATG	6 cut(s)	37, 206, 740, 863, 889, 1253
FaqI	GGGAC	2 cut(s)	677, 1053
FatI	CATG	6 cut(s)	33, 202, 736, 859, 885, 1249
FauI	CCCGC	1 cut(s)	619
FauNDI	CATATG	1 cut(s)	1111
FbaI	TGATCA	1 cut(s)	892
FokI	GGATG	4 cut(s)	195, 206, 932, 1048
FriOI	GRGCYC	3 cut(s)	417, 507, 1345
FspBI	CTAG	3 cut(s)	353, 527, 548
GlaI	GCGC	1 cut(s)	1355
GsuI	CTGGAG	2 cut(s)	134, 1370
HaeII	RGCGCY	1 cut(s)	1357
HaeIII	GGCC	1 cut(s)	505
HapII	CCGG	3 cut(s)	332, 377, 1033
HgaI	GACGC	1 cut(s)	630
HhaI	GCGC	1 cut(s)	1356
Hin1II	CATG	6 cut(s)	37, 206, 740, 863, 889, 1253
Hin6I	GCGC	1 cut(s)	1354
HinP1I	GCGC	1 cut(s)	1354
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HinfI	GANTC	3 cut(s)	37, 1095, 1168
HpaII	CCGG	3 cut(s)	332, 377, 1033
HphI	GGTGA	3 cut(s)	43, 1127, 1201
Hpy166II	GTNNAC	2 cut(s)	85, 1225
Hpy188I	TCNGA	7 cut(s)	175, 391, 620, 1000, 1051, 1070, 1173
Hpy188III	TCNNGA	8 cut(s)	14, 34, 41, 140, 572, 896, 1092, 1160
Hpy8I	GTNNAC	2 cut(s)	85, 1225
HpyAV	CCTTC	5 cut(s)	712, 757, 984, 995, 1298
HpyCH4III	ACNGT	6 cut(s)	89, 179, 800, 823, 1180, 1320
HpyCH4IV	ACGT	1 cut(s)	849
HpyCH4V	TGCA	6 cut(s)	67, 92, 293, 423, 756, 980
HpyF10VI	GCNNNNNNNGC	6 cut(s)	272, 299, 335, 440, 699, 1362
HpyF3I	CTNAG	3 cut(s)	313, 804, 997
HpySE526I	ACGT	1 cut(s)	849
Hsp92II	CATG	6 cut(s)	37, 206, 740, 863, 889, 1253
HspAI	GCGC	1 cut(s)	1354
Ksp22I	TGATCA	1 cut(s)	892
KspI	CCGCGG	2 cut(s)	402, 615
LmnI	GCTCC	3 cut(s)	335, 648, 1351
Lsp1109I	GCAGC	7 cut(s)	407, 421, 556, 795, 964, 1231, 1377
LweI	GCATC	2 cut(s)	252, 1138
MaeI	CTAG	3 cut(s)	353, 527, 548
MaeII	ACGT	1 cut(s)	849
MaeIII	GTNAC	4 cut(s)	205, 1141, 1157, 1189
MbiI	CCGCTC	2 cut(s)	464, 637
MboII	GAAGA	6 cut(s)	466, 497, 598, 864, 1248, 1310
MfeI	CAATTG	1 cut(s)	650
MflI	RGATCY	4 cut(s)	136, 393, 993, 1208
MhlI	GDGCHC	5 cut(s)	417, 507, 832, 884, 1345
MluCI	AATT	3 cut(s)	558, 650, 1184
MlyI	GAGTC	1 cut(s)	1104
MmeI	TCCRAC	2 cut(s)	598, 1084
MseI	TTAA	2 cut(s)	383, 1380
MslI	CAYNNNNRTG	2 cut(s)	918, 1237
MspA1I	CMGCKG	2 cut(s)	401, 614
MspI	CCGG	3 cut(s)	332, 377, 1033
MspR9I	CCNGG	4 cut(s)	333, 378, 407, 877
MunI	CAATTG	1 cut(s)	650
MvaI	CCWGG	2 cut(s)	407, 877
MvnI	CGCG	2 cut(s)	401, 614
MwoI	GCNNNNNNNGC	6 cut(s)	272, 299, 335, 440, 699, 1362
NciI	CCSGG	2 cut(s)	333, 378
NcoI	CCATGG	1 cut(s)	885
NdeI	CATATG	1 cut(s)	1111
NheI	GCTAGC	1 cut(s)	526
NlaIII	CATG	6 cut(s)	37, 206, 740, 863, 889, 1253
NlaIV	GGNNCC	7 cut(s)	330, 449, 505, 516, 644, 883, 1375
NmeAIII	GCCGAG	2 cut(s)	198, 396
NmuCI	GTSAC	4 cut(s)	205, 1141, 1157, 1189
OliI	CACNNNNGTG	1 cut(s)	1237
PagI	TCATGA	1 cut(s)	33
PcsI	WCGNNNNNNNCGW	2 cut(s)	579, 672
PfeI	GAWTC	2 cut(s)	37, 1168
PflFI	GACNNNGTC	1 cut(s)	821
PflMI	CCANNNNNTGG	1 cut(s)	865
PleI	GAGTC	1 cut(s)	1103
PpsI	GAGTC	1 cut(s)	1103
Psp124BI	GAGCTC	1 cut(s)	417
Psp6I	CCWGG	2 cut(s)	405, 875
PspGI	CCWGG	2 cut(s)	405, 875
PspN4I	GGNNCC	7 cut(s)	330, 449, 505, 516, 644, 883, 1375
PspOMI	GGGCCC	1 cut(s)	503
PspPI	GGNCC	8 cut(s)	121, 370, 403, 447, 503, 504, 514, 1373
PsuI	RGATCY	4 cut(s)	136, 393, 993, 1208
PsyI	GACNNNGTC	1 cut(s)	821
RsaI	GTAC	2 cut(s)	659, 1281
RsaNI	GTAC	2 cut(s)	658, 1280
RseI	CAYNNNNRTG	2 cut(s)	918, 1237
SacI	GAGCTC	1 cut(s)	417
SacII	CCGCGG	2 cut(s)	402, 615
SaqAI	TTAA	2 cut(s)	383, 1380
Sau96I	GGNCC	8 cut(s)	121, 370, 403, 447, 503, 504, 514, 1373
SchI	GAGTC	1 cut(s)	1104
ScrFI	CCNGG	4 cut(s)	333, 378, 407, 877
SduI	GDGCHC	5 cut(s)	417, 507, 832, 884, 1345
SfaNI	GCATC	2 cut(s)	252, 1138
Sfr303I	CCGCGG	2 cut(s)	402, 615
SgrBI	CCGCGG	2 cut(s)	402, 615
SinI	GGWCC	6 cut(s)	121, 370, 403, 447, 514, 1373
SmiMI	CAYNNNNRTG	2 cut(s)	918, 1237
Sse9I	AATT	3 cut(s)	558, 650, 1184
SsiI	CCGC	9 cut(s)	399, 401, 464, 612, 614, 637, 640, 699, 1220
SspI	AATATT	1 cut(s)	902
SspMI	CTAG	3 cut(s)	353, 527, 548
SstI	GAGCTC	1 cut(s)	417
StyD4I	CCNGG	4 cut(s)	331, 376, 405, 875
StyI	CCWWGG	2 cut(s)	366, 885
TaaI	ACNGT	6 cut(s)	89, 179, 800, 823, 1180, 1320
TaiI	ACGT	1 cut(s)	852
TaqI	TCGA	4 cut(s)	483, 730, 743, 1098
TaqII	GACCGA	1 cut(s)	387
TasI	AATT	3 cut(s)	558, 650, 1184
TauI	GCSGC	4 cut(s)	467, 640, 643, 702
TfiI	GAWTC	2 cut(s)	37, 1168
Tru1I	TTAA	2 cut(s)	383, 1380
Tru9I	TTAA	2 cut(s)	383, 1380
TscAI	CASTG	5 cut(s)	94, 238, 841, 1131, 1185
TseFI	GTSAC	4 cut(s)	205, 1141, 1157, 1189
TseI	GCWGC	7 cut(s)	420, 434, 544, 808, 977, 1244, 1365
Tsp45I	GTSAC	4 cut(s)	205, 1141, 1157, 1189
TspDTI	ATGAA	2 cut(s)	1248, 1317
TspGWI	ACGGA	3 cut(s)	224, 513, 527
TspRI	CASTG	5 cut(s)	94, 238, 841, 1131, 1185
Tth111I	GACNNNGTC	1 cut(s)	821
Van91I	CCANNNNNTGG	1 cut(s)	865
VpaK11BI	GGWCC	6 cut(s)	121, 370, 403, 447, 514, 1373
XcmI	CCANNNNNNNNNTGG	2 cut(s)	883, 1033
XspI	CTAG	3 cut(s)	353, 527, 548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.