Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0018779

Physical Location & Seq

Genomic Coordinates Forward (+)

11852053 .. 11852544

Gene Structure 492 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g19621.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGTTTGGGGTGAGTGAAGAATCCAAGGCCTACCGGTTGTATGATCCAGTGGAAGAGTGCATCATTGTTAGCAGAGATGTGATCTTTGAAGAGGACGAAAGCTGGAATTGGGGCAGAGATACAGAGGCTGTGAAACTAGATGTGTTAAAGTGGAATGAGGATGAAGAAGTGAATGGAGAACTTCAAGGTGTTGAAGAAGAAGAAAGCAGTAATGAGGAAAATAGTGGAAGTGACTCTTCCTCAAGTGAACCAACAGAAGAAGAAGAAGAAGGTCAAGAGGCAGGAAGAACAAGAAGAGCTCCGCCTTACTTGAATGATTATGTAAGTGGAGAGGGTTTCTCAGGAGGAGAAGGAGAAGAAGATGAAGGGCTGCACAACATGGTGATGTTTACCTCTGTAGATCCGGCAAATTTCAAAGAAGCTTGCAGAGAAGCCAAGTGGAGGGCAGCAATGGATCAAGAAATTCAGTCAATTGAGAAAAATAACACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

164

Amino Acids

18.45

Weight (kDa)

4.05

Isoelectric Point (pI)

74.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SH3_retrovirus	PF25597	2 - 40	3.5e-12	Retroviral polymerase SH3-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018779)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g19621 FvH4_3g45131 FvH4_5g34741 FvH4_6g26671
rosa_multiflora	Rmu_co8341233.1_g000001 Rmu_co8379441.1_g000001 Rmu_sc0004553.1_g000011 Rmu_sc0008215.1_g000005
rosa_samantha	Rh4DG385800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	302
AclWI	GGATC	3 cut(s)	38, 395, 462
AcsI	RAATTY	2 cut(s)	409, 462
AfiI	CCNNNNNNNGG	1 cut(s)	441
AgeI	ACCGGT	1 cut(s)	33
AgsI	TTSAA	5 cut(s)	89, 185, 194, 313, 415
AluBI	AGCT	3 cut(s)	102, 299, 422
AluI	AGCT	3 cut(s)	102, 299, 422
Alw21I	GWGCWC	1 cut(s)	301
AlwI	GGATC	3 cut(s)	38, 395, 462
AlwNI	CAGNNNCTG	1 cut(s)	128
AoxI	GGCC	1 cut(s)	27
ApeKI	GCWGC	2 cut(s)	370, 446
ApoI	RAATTY	2 cut(s)	409, 462
AsiGI	ACCGGT	1 cut(s)	33
AsuHPI	GGTGA	2 cut(s)	22, 394
BanII	GRGCYC	1 cut(s)	301
Bbv12I	GWGCWC	1 cut(s)	301
BbvI	GCAGC	2 cut(s)	357, 458
BfaI	CTAG	1 cut(s)	137
BfmI	CTRYAG	1 cut(s)	396
BisI	GCNGC	2 cut(s)	371, 447
BlsI	GCNGC	2 cut(s)	372, 448
BmsI	GCATC	1 cut(s)	69
BplI	GAGNNNNNCTC	2 cut(s)	323, 355
BpuEI	CTTGAG	1 cut(s)	226
BsaJI	CCNNGG	1 cut(s)	24
BsaWI	WCCGGW	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	1 cut(s)	441
Bse118I	RCCGGY	1 cut(s)	33
Bse1I	ACTGG	1 cut(s)	47
Bse3DI	GCAATG	1 cut(s)	456
BseDI	CCNNGG	1 cut(s)	24
BseGI	GGATG	1 cut(s)	166
BseLI	CCNNNNNNNGG	1 cut(s)	441
BseMI	GCAATG	1 cut(s)	456
BseMII	CTCAG	1 cut(s)	354
BseNI	ACTGG	1 cut(s)	47
BseRI	GAGGAG	1 cut(s)	360
BseXI	GCAGC	2 cut(s)	357, 458
BsgI	GTGCAG	1 cut(s)	356
BshFI	GGCC	1 cut(s)	29
BshTI	ACCGGT	1 cut(s)	33
BsiHKAI	GWGCWC	1 cut(s)	301
BsiSI	CCGG	2 cut(s)	34, 404
BslI	CCNNNNNNNGG	1 cut(s)	441
BsnI	GGCC	1 cut(s)	29
Bsp1286I	GDGCHC	1 cut(s)	301
Bsp143I	GATC	4 cut(s)	43, 81, 400, 454
BspACI	CCGC	1 cut(s)	302
BspANI	GGCC	1 cut(s)	29
BspCNI	CTCAG	1 cut(s)	353
BspPI	GGATC	3 cut(s)	38, 395, 462
BspQI	GCTCTTC	1 cut(s)	289
BsrDI	GCAATG	1 cut(s)	456
BsrFI	RCCGGY	1 cut(s)	33
BsrI	ACTGG	1 cut(s)	47
BssAI	RCCGGY	1 cut(s)	33
BssECI	CCNNGG	1 cut(s)	24
BssMI	GATC	4 cut(s)	43, 81, 400, 454
BssT1I	CCWWGG	1 cut(s)	24
Bst6I	CTCTTC	4 cut(s)	48, 84, 241, 289
BstC8I	GCNNGC	1 cut(s)	424
BstDEI	CTNAG	2 cut(s)	340, 489
BstF5I	GGATG	1 cut(s)	166
BstKTI	GATC	4 cut(s)	46, 84, 403, 457
BstMBI	GATC	4 cut(s)	43, 81, 400, 454
BstSFI	CTRYAG	1 cut(s)	396
BstV1I	GCAGC	2 cut(s)	357, 458
BstX2I	RGATCY	1 cut(s)	400
BstYI	RGATCY	1 cut(s)	400
BsuRI	GGCC	1 cut(s)	29
BtsCI	GGATG	1 cut(s)	166
BtsIMutI	CAGTG	1 cut(s)	54
Cac8I	GCNNGC	1 cut(s)	424
CaiI	CAGNNNCTG	1 cut(s)	128
Cfr10I	RCCGGY	1 cut(s)	33
CspAI	ACCGGT	1 cut(s)	33
CviAII	CATG	1 cut(s)	379
CviJI	RGCY	7 cut(s)	29, 102, 128, 299, 370, 422, 434
CviKI_1	RGCY	7 cut(s)	29, 102, 128, 299, 370, 422, 434
DdeI	CTNAG	2 cut(s)	340, 489
DpnI	GATC	4 cut(s)	45, 83, 402, 456
DpnII	GATC	4 cut(s)	43, 81, 400, 454
Eam1104I	CTCTTC	4 cut(s)	48, 84, 241, 289
EarI	CTCTTC	4 cut(s)	48, 84, 241, 289
EciI	GGCGGA	1 cut(s)	291
Ecl136II	GAGCTC	1 cut(s)	299
Eco130I	CCWWGG	1 cut(s)	24
Eco147I	AGGCCT	1 cut(s)	29
Eco24I	GRGCYC	1 cut(s)	301
Eco53kI	GAGCTC	1 cut(s)	299
EcoICRI	GAGCTC	1 cut(s)	299
EcoT14I	CCWWGG	1 cut(s)	24
EcoT38I	GRGCYC	1 cut(s)	301
ErhI	CCWWGG	1 cut(s)	24
FaeI	CATG	1 cut(s)	382
FaiI	YATR	3 cut(s)	42, 321, 380
FalI	AAGNNNNNCTT	2 cut(s)	220, 252
FatI	CATG	1 cut(s)	378
Fnu4HI	GCNGC	2 cut(s)	371, 447
FokI	GGATG	1 cut(s)	173
FriOI	GRGCYC	1 cut(s)	301
Fsp4HI	GCNGC	2 cut(s)	371, 447
FspBI	CTAG	1 cut(s)	137
GluI	GCNGC	2 cut(s)	371, 447
HaeIII	GGCC	1 cut(s)	29
HapII	CCGG	2 cut(s)	34, 404
Hin1II	CATG	1 cut(s)	382
HindIII	AAGCTT	1 cut(s)	420
HinfI	GANTC	2 cut(s)	20, 233
HpaII	CCGG	2 cut(s)	34, 404
HphI	GGTGA	2 cut(s)	22, 394
Hpy166II	GTNNAC	2 cut(s)	248, 390
Hpy188III	TCNNGA	3 cut(s)	275, 342, 458
Hpy8I	GTNNAC	2 cut(s)	248, 390
HpyAV	CCTTC	3 cut(s)	263, 344, 359
HpyCH4V	TGCA	3 cut(s)	60, 373, 426
HpyF3I	CTNAG	2 cut(s)	340, 489
Hsp92II	CATG	1 cut(s)	382
Kzo9I	GATC	4 cut(s)	43, 81, 400, 454
LguI	GCTCTTC	1 cut(s)	289
LmnI	GCTCC	1 cut(s)	304
LpnPI	CCDG	6 cut(s)	47, 60, 88, 267, 327, 417
Lsp1109I	GCAGC	2 cut(s)	357, 458
LweI	GCATC	1 cut(s)	69
MaeI	CTAG	1 cut(s)	137
MaeIII	GTNAC	1 cut(s)	230
MalI	GATC	4 cut(s)	45, 83, 402, 456
MboI	GATC	4 cut(s)	43, 81, 400, 454
MfeI	CAATTG	1 cut(s)	471
MflI	RGATCY	1 cut(s)	400
MhlI	GDGCHC	1 cut(s)	301
MluCI	AATT	4 cut(s)	106, 409, 462, 471
MlyI	GAGTC	1 cut(s)	227
MseI	TTAA	1 cut(s)	146
MslI	CAYNNNNRTG	1 cut(s)	383
MspI	CCGG	2 cut(s)	34, 404
MunI	CAATTG	1 cut(s)	471
NdeII	GATC	4 cut(s)	43, 81, 400, 454
NlaIII	CATG	1 cut(s)	382
NmuCI	GTSAC	1 cut(s)	230
PceI	AGGCCT	1 cut(s)	29
PciSI	GCTCTTC	1 cut(s)	289
PfeI	GAWTC	1 cut(s)	20
PinAI	ACCGGT	1 cut(s)	33
PkrI	GCNGC	2 cut(s)	372, 448
PleI	GAGTC	1 cut(s)	227
PpsI	GAGTC	1 cut(s)	227
Psp124BI	GAGCTC	1 cut(s)	301
PstNI	CAGNNNCTG	1 cut(s)	128
PsuI	RGATCY	1 cut(s)	400
RseI	CAYNNNNRTG	1 cut(s)	383
SacI	GAGCTC	1 cut(s)	301
SapI	GCTCTTC	1 cut(s)	289
SaqAI	TTAA	1 cut(s)	146
SatI	GCNGC	2 cut(s)	371, 447
Sau3AI	GATC	4 cut(s)	43, 81, 400, 454
SchI	GAGTC	1 cut(s)	227
SduI	GDGCHC	1 cut(s)	301
SetI	ASST	6 cut(s)	104, 190, 274, 301, 395, 424
SfaNI	GCATC	1 cut(s)	69
SfcI	CTRYAG	1 cut(s)	396
SmiMI	CAYNNNNRTG	1 cut(s)	383
SmlI	CTYRAG	1 cut(s)	241
SmoI	CTYRAG	1 cut(s)	241
Sse9I	AATT	4 cut(s)	106, 409, 462, 471
SseBI	AGGCCT	1 cut(s)	29
SsiI	CCGC	1 cut(s)	302
SspMI	CTAG	1 cut(s)	137
SstI	GAGCTC	1 cut(s)	301
StuI	AGGCCT	1 cut(s)	29
StyI	CCWWGG	1 cut(s)	24
TasI	AATT	4 cut(s)	106, 409, 462, 471
TfiI	GAWTC	1 cut(s)	20
Tru1I	TTAA	1 cut(s)	146
Tru9I	TTAA	1 cut(s)	146
TscAI	CASTG	1 cut(s)	54
TseFI	GTSAC	1 cut(s)	230
TseI	GCWGC	2 cut(s)	370, 446
Tsp45I	GTSAC	1 cut(s)	230
TspDTI	ATGAA	2 cut(s)	177, 378
TspRI	CASTG	1 cut(s)	54
XapI	RAATTY	2 cut(s)	409, 462
XspI	CTAG	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.