Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8379441.1

Orthogroup ID

OG0018779

Physical Location & Seq

Genomic Coordinates Reverse (-)

545 .. 1033

Gene Structure 489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8379441.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

atgttggggatgagtgatgaatccaaagcatatcagctctttgatctagcaaccaatcgtattgtgatctgcaaggatgtgatttttgaagaagataagtgctgggattgggaaggaagttcagaagagacgaaggtagatgtgttagattggggagaaactgaagaagagaggaactcactcactcaagtgtcaagtggcttggattcaagtcaatcttcaaaagaagctcaagaagaagggaggataggcaaaccacctgtgtggatagaagattacgagagcggagagggattgtcagaagaagaagtgagtcaaaactttgtgttgtttacttcagtatctgatccagccactttcgaagaagctatccaaagtgacaaatggaggaacgcaatggataatgagatatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

137

Amino Acids

15.54

Weight (kDa)

4.05

Isoelectric Point (pI)

63.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018779)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g19621 FvH4_3g45131 FvH4_5g34741 FvH4_6g26671
rosa_multiflora	Rmu_co8341233.1_g000001 Rmu_co8379441.1_g000001 Rmu_sc0004553.1_g000011 Rmu_sc0008215.1_g000005
rosa_samantha	Rh4DG385800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	285
AciI	CCGC	1 cut(s)	285
AclWI	GGATC	1 cut(s)	341
AcuI	CTGAAG	2 cut(s)	183, 321
AgsI	TTSAA	3 cut(s)	89, 210, 222
AleI	CACNNNNGTG	2 cut(s)	188, 262
AluBI	AGCT	3 cut(s)	37, 230, 368
AluI	AGCT	3 cut(s)	37, 230, 368
Alw26I	GTCTC	1 cut(s)	122
AlwI	GGATC	1 cut(s)	341
AlwNI	CAGNNNCTG	1 cut(s)	344
AsuII	TTCGAA	1 cut(s)	360
BaeI	ACNNNNGTAYC	2 cut(s)	324, 357
BcoDI	GTCTC	1 cut(s)	122
BfaI	CTAG	1 cut(s)	47
BplI	GAGNNNNNCTC	2 cut(s)	161, 193
Bpu14I	TTCGAA	1 cut(s)	360
BpuEI	CTTGAG	2 cut(s)	171, 216
Bse3DI	GCAATG	1 cut(s)	402
BseGI	GGATG	2 cut(s)	15, 82
BseMI	GCAATG	1 cut(s)	402
BseYI	CCCAGC	1 cut(s)	102
BsmAI	GTCTC	1 cut(s)	122
BsmBI	CGTCTC	1 cut(s)	122
Bsp119I	TTCGAA	1 cut(s)	360
Bsp143I	GATC	3 cut(s)	43, 66, 346
BspACI	CCGC	1 cut(s)	285
BspPI	GGATC	1 cut(s)	341
BspT104I	TTCGAA	1 cut(s)	360
BsrBI	CCGCTC	1 cut(s)	285
BsrDI	GCAATG	1 cut(s)	402
BssMI	GATC	3 cut(s)	43, 66, 346
Bst6I	CTCTTC	2 cut(s)	120, 162
BstBI	TTCGAA	1 cut(s)	360
BstF5I	GGATG	2 cut(s)	15, 82
BstKTI	GATC	3 cut(s)	46, 69, 349
BstMAI	GTCTC	1 cut(s)	122
BstMBI	GATC	3 cut(s)	43, 66, 346
BstXI	CCANNNNNNTGG	1 cut(s)	264
BtsCI	GGATG	2 cut(s)	15, 82
CaiI	CAGNNNCTG	1 cut(s)	344
CviJI	RGCY	5 cut(s)	37, 201, 230, 353, 368
CviKI_1	RGCY	5 cut(s)	37, 201, 230, 353, 368
DpnI	GATC	3 cut(s)	45, 68, 348
DpnII	GATC	3 cut(s)	43, 66, 346
Eam1104I	CTCTTC	2 cut(s)	120, 162
EarI	CTCTTC	2 cut(s)	120, 162
Eco57I	CTGAAG	2 cut(s)	183, 321
Esp3I	CGTCTC	1 cut(s)	122
FaiI	YATR	2 cut(s)	31, 412
FalI	AAGNNNNNCTT	2 cut(s)	202, 234
FokI	GGATG	2 cut(s)	22, 89
FspBI	CTAG	1 cut(s)	47
GsaI	CCCAGC	1 cut(s)	106
HinfI	GANTC	3 cut(s)	20, 206, 313
Hpy166II	GTNNAC	1 cut(s)	333
Hpy188I	TCNGA	3 cut(s)	124, 301, 346
Hpy188III	TCNNGA	1 cut(s)	233
Hpy8I	GTNNAC	1 cut(s)	333
HpyAV	CCTTC	3 cut(s)	107, 127, 233
HpyCH4V	TGCA	1 cut(s)	72
Kzo9I	GATC	3 cut(s)	43, 66, 346
LpnPI	CCDG	3 cut(s)	88, 273, 363
MaeI	CTAG	1 cut(s)	47
MaeIII	GTNAC	1 cut(s)	377
MalI	GATC	3 cut(s)	45, 68, 348
MbiI	CCGCTC	1 cut(s)	285
MboI	GATC	3 cut(s)	43, 66, 346
MlyI	GAGTC	1 cut(s)	322
MnlI	CCTC	4 cut(s)	165, 237, 283, 381
MslI	CAYNNNNRTG	2 cut(s)	188, 262
NdeII	GATC	3 cut(s)	43, 66, 346
NmuCI	GTSAC	1 cut(s)	377
NspV	TTCGAA	1 cut(s)	360
OliI	CACNNNNGTG	2 cut(s)	188, 262
PfeI	GAWTC	2 cut(s)	20, 206
PleI	GAGTC	1 cut(s)	321
PpsI	GAGTC	1 cut(s)	321
PspFI	CCCAGC	1 cut(s)	102
PstNI	CAGNNNCTG	1 cut(s)	344
RseI	CAYNNNNRTG	2 cut(s)	188, 262
Sau3AI	GATC	3 cut(s)	43, 66, 346
SchI	GAGTC	1 cut(s)	322
SetI	ASST	5 cut(s)	39, 138, 232, 262, 370
SfuI	TTCGAA	1 cut(s)	360
SmiMI	CAYNNNNRTG	2 cut(s)	188, 262
SmlI	CTYRAG	2 cut(s)	186, 231
SmoI	CTYRAG	2 cut(s)	186, 231
SsiI	CCGC	1 cut(s)	285
SspMI	CTAG	1 cut(s)	47
TaqI	TCGA	1 cut(s)	360
TfiI	GAWTC	2 cut(s)	20, 206
TseFI	GTSAC	1 cut(s)	377
Tsp45I	GTSAC	1 cut(s)	377
TspDTI	ATGAA	1 cut(s)	33
XspI	CTAG	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.