FvH4_5g34741

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
25443995 .. 25445041
1047 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g34741.t1

Sequence Viewer

Length: 282 bp
ATGATGGATTTAGAGTGGGGAGACAATGAGAATGATGTTGTTATAGAAGAAGAAAATGAAGCTGAAAGGACTAATGAAGCTGAGGTAGCTGATGGTGTAGCTGATGAAGGAACATCAAATGGAGCTGAAGAAGAAGACATTAGAGCAAGGGAGGGCAGAGAAAGACAGCCACCACCATATTTGCAAGATTATGTTTCAGGTGAAGGCCTTTCTGAAAGTGAAGATGTGGTGAATATGGTCCTAGTTGATTCCACAGATCCTATTAACTTTGAAGACGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.33

Weight (kDa)

4.05

Isoelectric Point (pI)

43.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 251
AcuI CTGAAG 1 cut(s) 147
AgsI TTSAA 1 cut(s) 272
AluBI AGCT 5 cut(s) 62, 80, 89, 101, 125
AluI AGCT 5 cut(s) 62, 80, 89, 101, 125
Alw26I GTCTC 1 cut(s) 15
AlwI GGATC 1 cut(s) 251
AoxI GGCC 1 cut(s) 205
AspS9I GGNCC 1 cut(s) 238
AsuHPI GGTGA 2 cut(s) 212, 241
AvaII GGWCC 1 cut(s) 238
BbsI GAAGAC 1 cut(s) 141
BbvCI CCTCAGC 1 cut(s) 81
BccI CCATC 1 cut(s) 86
BcoDI GTCTC 1 cut(s) 15
BfaI CTAG 1 cut(s) 242
Bme18I GGWCC 1 cut(s) 238
BmgT120I GGNCC 1 cut(s) 238
BpiI GAAGAC 1 cut(s) 141
Bpu10I CCTNAGC 1 cut(s) 81
BseMII CTCAG 1 cut(s) 72
BshFI GGCC 1 cut(s) 207
BsmAI GTCTC 1 cut(s) 15
BsnI GGCC 1 cut(s) 207
Bsp143I GATC 1 cut(s) 256
BspANI GGCC 1 cut(s) 207
BspCNI CTCAG 1 cut(s) 73
BspPI GGATC 1 cut(s) 251
BssMI GATC 1 cut(s) 256
BstDEI CTNAG 1 cut(s) 81
BstKTI GATC 1 cut(s) 259
BstMAI GTCTC 1 cut(s) 15
BstMBI GATC 1 cut(s) 256
BstMWI GCNNNNNNNGC 1 cut(s) 86
BstV2I GAAGAC 1 cut(s) 141
BstX2I RGATCY 1 cut(s) 256
BstYI RGATCY 1 cut(s) 256
BsuRI GGCC 1 cut(s) 207
Cfr13I GGNCC 1 cut(s) 238
CspCI CAANNNNNGTGG 2 cut(s) 162, 197
CviJI RGCY 7 cut(s) 62, 80, 89, 101, 125, 169, 207
CviKI_1 RGCY 7 cut(s) 62, 80, 89, 101, 125, 169, 207
DdeI CTNAG 1 cut(s) 81
DpnI GATC 1 cut(s) 258
DpnII GATC 1 cut(s) 256
Eco147I AGGCCT 1 cut(s) 207
Eco47I GGWCC 1 cut(s) 238
Eco57I CTGAAG 1 cut(s) 147
FaiI YATR 4 cut(s) 44, 178, 192, 236
FspBI CTAG 1 cut(s) 242
HaeIII GGCC 1 cut(s) 207
HinfI GANTC 1 cut(s) 248
HphI GGTGA 2 cut(s) 212, 241
Hpy188I TCNGA 1 cut(s) 214
HpyAV CCTTC 2 cut(s) 101, 197
HpyCH4V TGCA 1 cut(s) 184
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
HpyF3I CTNAG 1 cut(s) 81
Kzo9I GATC 1 cut(s) 256
LmnI GCTCC 1 cut(s) 122
LpnPI CCDG 1 cut(s) 183
MaeI CTAG 1 cut(s) 242
MalI GATC 1 cut(s) 258
MboI GATC 1 cut(s) 256
MboII GAAGA 6 cut(s) 59, 62, 140, 143, 146, 233
MflI RGATCY 1 cut(s) 256
MnlI CCTC 2 cut(s) 76, 145
MseI TTAA 2 cut(s) 264, 280
MwoI GCNNNNNNNGC 1 cut(s) 86
NdeII GATC 1 cut(s) 256
PceI AGGCCT 1 cut(s) 207
PfeI GAWTC 1 cut(s) 248
PspPI GGNCC 1 cut(s) 238
PsuI RGATCY 1 cut(s) 256
SaqAI TTAA 2 cut(s) 264, 280
Sau3AI GATC 1 cut(s) 256
Sau96I GGNCC 1 cut(s) 238
SetI ASST 7 cut(s) 64, 82, 87, 91, 103, 127, 202
SgeI CNNG 4 cut(s) 159, 197, 210, 254
SinI GGWCC 1 cut(s) 238
SseBI AGGCCT 1 cut(s) 207
SspMI CTAG 1 cut(s) 242
StuI AGGCCT 1 cut(s) 207
TfiI GAWTC 1 cut(s) 248
Tru1I TTAA 2 cut(s) 264, 280
Tru9I TTAA 2 cut(s) 264, 280
TspDTI ATGAA 3 cut(s) 72, 90, 120
VpaK11BI GGWCC 1 cut(s) 238
XspI CTAG 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.