Rmu_co8341233.1_g000001

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8341233.1
Physical Location & Seq
Forward (+)
1 .. 1008
1008 bp
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UTR
Exon/CDS
Intron
Rmu_co8341233.1_g000001.1.cds

Sequence Viewer

Length: 342 bp
atgagaagtgggattggggaagaaatgttgaagaaataaagtgcgatgtcctagaatggggtgatgaagatgacatcgagaatggagttgtacaagctgaggaagaaggtgaaaatgaagaagatgagcaagtggaggaggaagaatcaatcgattcaccatccaatgaatcatttgaagaaggatcaccgagtccaaatcaagggaggatcaggagacaaccaccttggatgcaagaatatgtgagtggtgaaggattatttgatgaagaggagttgcacaacttggtgatgttcattgcagccaaagattctgtctcatttgaagaagcagtcaagagct
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

13.01

Weight (kDa)

4.05

Isoelectric Point (pI)

85.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 192, 217
AfaI GTAC 1 cut(s) 92
AfiI CCNNNNNNNGG 2 cut(s) 57, 202
AgsI TTSAA 3 cut(s) 31, 178, 325
AluBI AGCT 2 cut(s) 97, 341
AluI AGCT 2 cut(s) 97, 341
Alw26I GTCTC 2 cut(s) 210, 321
AlwI GGATC 2 cut(s) 192, 217
ApeKI GCWGC 1 cut(s) 301
ArsI GACNNNNNNTTYG 2 cut(s) 299, 331
AsuHPI GGTGA 6 cut(s) 73, 121, 149, 179, 262, 300
BbvCI CCTCAGC 1 cut(s) 98
BbvI GCAGC 1 cut(s) 313
BccI CCATC 1 cut(s) 168
BcoDI GTCTC 2 cut(s) 210, 321
BfaI CTAG 1 cut(s) 52
BisI GCNGC 1 cut(s) 302
BlsI GCNGC 1 cut(s) 303
BmsI GCATC 1 cut(s) 221
Bpu10I CCTNAGC 1 cut(s) 98
Bsa29I ATCGAT 1 cut(s) 152
BsaJI CCNNGG 1 cut(s) 226
Bsc4I CCNNNNNNNGG 2 cut(s) 57, 202
Bse3DI GCAATG 1 cut(s) 296
BseCI ATCGAT 1 cut(s) 152
BseDI CCNNGG 1 cut(s) 226
BseGI GGATG 2 cut(s) 160, 236
BseLI CCNNNNNNNGG 2 cut(s) 57, 202
BseMI GCAATG 1 cut(s) 296
BseMII CTCAG 1 cut(s) 89
BseRI GAGGAG 2 cut(s) 151, 286
BseXI GCAGC 1 cut(s) 313
BshVI ATCGAT 1 cut(s) 152
BslI CCNNNNNNNGG 2 cut(s) 57, 202
BsmAI GTCTC 2 cut(s) 210, 321
Bsp1407I TGTACA 1 cut(s) 90
Bsp143I GATC 2 cut(s) 184, 209
BspCNI CTCAG 1 cut(s) 90
BspDI ATCGAT 1 cut(s) 152
BspPI GGATC 2 cut(s) 192, 217
BsrDI GCAATG 1 cut(s) 296
BsrGI TGTACA 1 cut(s) 90
BssECI CCNNGG 1 cut(s) 226
BssMI GATC 2 cut(s) 184, 209
BssT1I CCWWGG 1 cut(s) 226
Bst6I CTCTTC 1 cut(s) 263
BstAUI TGTACA 1 cut(s) 90
BstDEI CTNAG 1 cut(s) 98
BstF5I GGATG 2 cut(s) 160, 236
BstKTI GATC 2 cut(s) 187, 212
BstMAI GTCTC 2 cut(s) 210, 321
BstMBI GATC 2 cut(s) 184, 209
BstV1I GCAGC 1 cut(s) 313
Bsu15I ATCGAT 1 cut(s) 152
BsuTUI ATCGAT 1 cut(s) 152
BtgZI GCGATG 1 cut(s) 59
BtsCI GGATG 2 cut(s) 160, 236
ClaI ATCGAT 1 cut(s) 152
Csp6I GTAC 1 cut(s) 91
CviJI RGCY 3 cut(s) 97, 304, 341
CviKI_1 RGCY 3 cut(s) 97, 304, 341
CviQI GTAC 1 cut(s) 91
DdeI CTNAG 1 cut(s) 98
DpnI GATC 2 cut(s) 186, 211
DpnII GATC 2 cut(s) 184, 209
Eam1104I CTCTTC 1 cut(s) 263
EarI CTCTTC 1 cut(s) 263
Eco130I CCWWGG 1 cut(s) 226
EcoT14I CCWWGG 1 cut(s) 226
ErhI CCWWGG 1 cut(s) 226
FaiI YATR 1 cut(s) 242
Fnu4HI GCNGC 1 cut(s) 302
FokI GGATG 2 cut(s) 147, 243
Fsp4HI GCNGC 1 cut(s) 302
FspBI CTAG 1 cut(s) 52
GluI GCNGC 1 cut(s) 302
HinfI GANTC 5 cut(s) 145, 154, 169, 192, 310
HphI GGTGA 6 cut(s) 73, 121, 149, 179, 262, 300
Hpy188III TCNNGA 3 cut(s) 78, 213, 336
HpyAV CCTTC 3 cut(s) 100, 175, 247
HpyCH4V TGCA 3 cut(s) 234, 279, 301
HpyF3I CTNAG 1 cut(s) 98
Kzo9I GATC 2 cut(s) 184, 209
LpnPI CCDG 1 cut(s) 198
Lsp1109I GCAGC 1 cut(s) 313
LweI GCATC 1 cut(s) 221
MaeI CTAG 1 cut(s) 52
MalI GATC 2 cut(s) 186, 211
MboI GATC 2 cut(s) 184, 209
MlyI GAGTC 1 cut(s) 201
MnlI CCTC 5 cut(s) 93, 129, 132, 200, 264
NdeII GATC 2 cut(s) 184, 209
PfeI GAWTC 4 cut(s) 145, 154, 169, 310
PkrI GCNGC 1 cut(s) 303
PleI GAGTC 1 cut(s) 200
PpsI GAGTC 1 cut(s) 200
RsaI GTAC 1 cut(s) 92
RsaNI GTAC 1 cut(s) 91
SatI GCNGC 1 cut(s) 302
Sau3AI GATC 2 cut(s) 184, 209
SchI GAGTC 1 cut(s) 201
SetI ASST 3 cut(s) 99, 111, 228
SfaNI GCATC 1 cut(s) 221
SspMI CTAG 1 cut(s) 52
StyI CCWWGG 1 cut(s) 226
TaqI TCGA 2 cut(s) 77, 152
TatI WGTACW 1 cut(s) 90
TfiI GAWTC 4 cut(s) 145, 154, 169, 310
TseI GCWGC 1 cut(s) 301
TspDTI ATGAA 5 cut(s) 80, 131, 182, 281, 285
XspI CTAG 1 cut(s) 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.