Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0017228

Physical Location & Seq

Genomic Coordinates Forward (+)

13426436 .. 13427165

Gene Structure 730 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g21470.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGAACATGGAAATCTCCTTCCAAATCACCAATCCTAAGCTAGAGAAGATGGTTTCAATGCCATCGAACCAGAAAGCCTATATTTCATGCAGATCTCATGGTGGGTTAGCCATGCACAAAAAGAACAAGGCCAGCAACTTTTACGATTTGCTTTCACTCGGTTCTGAGAATAACAATAAGGTTGGCTTGCATGAGATAAAGAAAGCATACAGAAACATGGCCCTTCAGCTTCACCCTGATGTTGTCCCTCCCTCTGCAAAAGAGGAGTCAACCAGACGATTCATCGAGCTTCAAAAGGCATATGAAACACTTTCAGACCCGGTTTCACGTCAAATTTACGATTACCAGTTGGGTTTGGGGATCTCATCGGTAGGGTGGGGAGTGGATGAATCATGTATGGATCAGGTGAATAGATCCATGTTCAGCAAGGAAGTGTGGGAAGAACAACTTCGGGGACTGCATAAGAGGTCTCAAACTCGAACGGGGAGGAAACACTATAGGCCGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006109 GO:0006457 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0009987 GO:0010322 GO:0010565 GO:0010675 GO:0019216 GO:0019220 GO:0019222 GO:0019747 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046890 GO:0050789 GO:0050790 GO:0050794 GO:0051174 GO:0051338 GO:0061077 GO:0062012 GO:0065007 GO:0065009 GO:0071071 GO:0080090 GO:1902395 GO:1903725

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

170

Amino Acids

19.47

Weight (kDa)

9.44

Isoelectric Point (pI)

69.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	46 - 114	1.3e-17	DnaJ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0017228)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21470
malus_domestica	MD00G1041000.v1.1
prunus_persica	Prupe.6G180400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0115291
rosa_laevigata	RLG00000018174
rosa_multiflora	Rmu_sc0006112.1_g000011
rosa_roxburghii	Rroxscaffold_2G00130830
rosa_rugosa	Rorug02G0195600
rosa_samantha	Rh2AG253900 Rh2BG264100 Rh2CG258500 Rh2DG262000
rosa_wichuraiana	Rw2G019820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	368, 408, 408
AcsI	RAATTY	1 cut(s)	333
AcuI	CTGAAG	1 cut(s)	209
AgsI	TTSAA	2 cut(s)	57, 293
AjiI	CACGTC	1 cut(s)	329
AluBI	AGCT	3 cut(s)	40, 229, 289
AluI	AGCT	3 cut(s)	40, 229, 289
Alw26I	GTCTC	1 cut(s)	474
AlwI	GGATC	3 cut(s)	368, 408, 408
AoxI	GGCC	3 cut(s)	129, 219, 500
ApoI	RAATTY	1 cut(s)	333
ArsI	GACNNNNNNTTYG	2 cut(s)	251, 283
Asp700I	GAANNNNTTC	1 cut(s)	447
AspS9I	GGNCC	1 cut(s)	220
AsuC2I	CCSGG	1 cut(s)	320
AsuHPI	GGTGA	3 cut(s)	19, 224, 418
BccI	CCATC	2 cut(s)	43, 70
BcnI	CCSGG	1 cut(s)	320
BcoDI	GTCTC	1 cut(s)	474
BfaI	CTAG	1 cut(s)	41
BfmI	CTRYAG	1 cut(s)	496
BglII	AGATCT	1 cut(s)	92
Bme1390I	CCNGG	1 cut(s)	320
BmgBI	CACGTC	1 cut(s)	329
BmgT120I	GGNCC	1 cut(s)	220
BmrFI	CCNGG	1 cut(s)	320
Bpu10I	CCTNAGC	1 cut(s)	36
BpuMI	CCSGG	1 cut(s)	320
BsaI	GGTCTC	1 cut(s)	474
Bse1I	ACTGG	1 cut(s)	346
BseGI	GGATG	1 cut(s)	391
BseMII	CTCAG	1 cut(s)	156
BseNI	ACTGG	1 cut(s)	346
BseRI	GAGGAG	1 cut(s)	278
BshFI	GGCC	3 cut(s)	131, 221, 502
BsiSI	CCGG	1 cut(s)	320
BslFI	GGGAC	2 cut(s)	230, 468
BsmAI	GTCTC	1 cut(s)	474
BsmFI	GGGAC	2 cut(s)	230, 468
BsnI	GGCC	3 cut(s)	131, 221, 502
Bso31I	GGTCTC	1 cut(s)	474
Bsp143I	GATC	4 cut(s)	92, 360, 400, 413
BspANI	GGCC	3 cut(s)	131, 221, 502
BspCNI	CTCAG	1 cut(s)	157
BspPI	GGATC	3 cut(s)	368, 408, 408
BspTNI	GGTCTC	1 cut(s)	474
BsrI	ACTGG	1 cut(s)	346
BssMI	GATC	4 cut(s)	92, 360, 400, 413
BstC8I	GCNNGC	2 cut(s)	133, 188
BstDEI	CTNAG	2 cut(s)	36, 165
BstF5I	GGATG	1 cut(s)	391
BstKTI	GATC	4 cut(s)	95, 363, 403, 416
BstMAI	GTCTC	1 cut(s)	474
BstMBI	GATC	4 cut(s)	92, 360, 400, 413
BstSCI	CCNGG	1 cut(s)	318
BstSFI	CTRYAG	1 cut(s)	496
BstX2I	RGATCY	3 cut(s)	92, 360, 413
BstYI	RGATCY	3 cut(s)	92, 360, 413
BsuRI	GGCC	3 cut(s)	131, 221, 502
BtrI	CACGTC	1 cut(s)	329
BtsCI	GGATG	1 cut(s)	391
Cac8I	GCNNGC	2 cut(s)	133, 188
Cfr13I	GGNCC	1 cut(s)	220
CviAII	CATG	8 cut(s)	7, 87, 98, 112, 191, 217, 393, 418
CviJI	RGCY	9 cut(s)	40, 77, 110, 131, 186, 221, 229, 289, 502
CviKI_1	RGCY	9 cut(s)	40, 77, 110, 131, 186, 221, 229, 289, 502
DdeI	CTNAG	2 cut(s)	36, 165
DpnI	GATC	4 cut(s)	94, 362, 402, 415
DpnII	GATC	4 cut(s)	92, 360, 400, 413
Eco31I	GGTCTC	1 cut(s)	474
Eco57I	CTGAAG	1 cut(s)	209
FaeI	CATG	8 cut(s)	10, 90, 101, 115, 194, 220, 396, 421
FalI	AAGNNNNNCTT	4 cut(s)	170, 202, 432, 464
FaqI	GGGAC	2 cut(s)	230, 468
FatI	CATG	8 cut(s)	6, 86, 97, 111, 190, 216, 392, 417
FauNDI	CATATG	1 cut(s)	301
FokI	GGATG	1 cut(s)	398
FspBI	CTAG	1 cut(s)	41
HaeIII	GGCC	3 cut(s)	131, 221, 502
HapII	CCGG	1 cut(s)	320
Hin1II	CATG	8 cut(s)	10, 90, 101, 115, 194, 220, 396, 421
HincII	GTYRAC	1 cut(s)	270
HindII	GTYRAC	1 cut(s)	270
HinfI	GANTC	3 cut(s)	266, 279, 389
HpaII	CCGG	1 cut(s)	320
HphI	GGTGA	3 cut(s)	19, 224, 418
Hpy166II	GTNNAC	1 cut(s)	270
Hpy188I	TCNGA	2 cut(s)	166, 316
Hpy8I	GTNNAC	1 cut(s)	270
HpyAV	CCTTC	2 cut(s)	28, 233
HpyCH4IV	ACGT	1 cut(s)	328
HpyCH4V	TGCA	5 cut(s)	90, 115, 190, 257, 460
HpyF3I	CTNAG	2 cut(s)	36, 165
HpySE526I	ACGT	1 cut(s)	328
Hsp92II	CATG	8 cut(s)	10, 90, 101, 115, 194, 220, 396, 421
Kzo9I	GATC	4 cut(s)	92, 360, 400, 413
LpnPI	CCDG	7 cut(s)	83, 145, 249, 286, 333, 359, 389
MaeI	CTAG	1 cut(s)	41
MaeII	ACGT	1 cut(s)	328
MalI	GATC	4 cut(s)	94, 362, 402, 415
MboI	GATC	4 cut(s)	92, 360, 400, 413
MboII	GAAGA	2 cut(s)	58, 452
MflI	RGATCY	3 cut(s)	92, 360, 413
MluCI	AATT	1 cut(s)	333
MlyI	GAGTC	1 cut(s)	275
MnlI	CCTC	5 cut(s)	256, 258, 262, 459, 480
MroXI	GAANNNNTTC	1 cut(s)	447
MslI	CAYNNNNRTG	1 cut(s)	237
MspI	CCGG	1 cut(s)	320
MspR9I	CCNGG	1 cut(s)	320
NciI	CCSGG	1 cut(s)	320
NdeI	CATATG	1 cut(s)	301
NdeII	GATC	4 cut(s)	92, 360, 400, 413
NlaIII	CATG	8 cut(s)	10, 90, 101, 115, 194, 220, 396, 421
PdmI	GAANNNNTTC	1 cut(s)	447
PfeI	GAWTC	2 cut(s)	279, 389
PleI	GAGTC	1 cut(s)	274
PpsI	GAGTC	1 cut(s)	274
PspPI	GGNCC	1 cut(s)	220
PsuI	RGATCY	3 cut(s)	92, 360, 413
RseI	CAYNNNNRTG	1 cut(s)	237
Sau3AI	GATC	4 cut(s)	92, 360, 400, 413
Sau96I	GGNCC	1 cut(s)	220
SchI	GAGTC	1 cut(s)	275
ScrFI	CCNGG	1 cut(s)	320
SetI	ASST	7 cut(s)	42, 183, 231, 291, 331, 408, 470
SfcI	CTRYAG	1 cut(s)	496
SmiMI	CAYNNNNRTG	1 cut(s)	237
Sse9I	AATT	1 cut(s)	333
SspMI	CTAG	1 cut(s)	41
StyD4I	CCNGG	1 cut(s)	318
TaiI	ACGT	1 cut(s)	331
TaqI	TCGA	3 cut(s)	65, 285, 478
TasI	AATT	1 cut(s)	333
TfiI	GAWTC	2 cut(s)	279, 389
TspDTI	ATGAA	5 cut(s)	17, 75, 271, 318, 402
XapI	RAATTY	1 cut(s)	333
XmnI	GAANNNNTTC	1 cut(s)	447
XspI	CTAG	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.