Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0017228

Physical Location & Seq

Genomic Coordinates Reverse (-)

18676584 .. 18677249

Gene Structure 666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G180400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGAAATGTCTTTGCCATTGCAAAGCATCAACCCTAAGGTAGCAAAGATGGCTCCAATGCTGCAGAAAGCAAGGCCAAAGCAAAGAGCTCATAGTTTTAAACTTCGAACCATTTCCTGCAGAGCTGATGGATTACCAATGCACAAAAAGAAGCCCAACTTTTATGAGGTACTTTCTCTTGGTTCTGAGAACAACGTAGGCTTGTATGACATAAAGAAAGCCTATAGAAGCATGGCTCGCAAATTCCACCCTGATCTTTGCCCTCCCTCAGCAAAAGAGGAGTCAACAAGAAAATTCATTGAGCTTCAAAAGGCTTATGAAACACTTTCTGACCCGATTTCACGCGAAATGTATGATTACCAGCTGGGTTTGGCTGGTTCATCAGCAGGGTTAGGGGTCGAGGGATTTTGTATGGAGGTAAAGAGATCCGTGTTTCAAAGGGAGGTGTGGGAAGAACAACTTCGTGGATTGCATAAGAGGTCTCAAACCAAAAGGGAAAGGAAAAATTATCGGTCAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006109 GO:0006457 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0009987 GO:0010322 GO:0010565 GO:0010675 GO:0019216 GO:0019220 GO:0019222 GO:0019747 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046890 GO:0050789 GO:0050790 GO:0050794 GO:0051174 GO:0051338 GO:0061077 GO:0062012 GO:0065007 GO:0065009 GO:0071071 GO:0080090 GO:1902395 GO:1903725

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

174

Amino Acids

20.03

Weight (kDa)

9.84

Isoelectric Point (pI)

69.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017228)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21470
malus_domestica	MD00G1041000.v1.1
prunus_persica	Prupe.6G180400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0115291
rosa_laevigata	RLG00000018174
rosa_multiflora	Rmu_sc0006112.1_g000011
rosa_roxburghii	Rroxscaffold_2G00130830
rosa_rugosa	Rorug02G0195600
rosa_samantha	Rh2AG253900 Rh2BG264100 Rh2CG258500 Rh2DG262000
rosa_wichuraiana	Rw2G019820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	345
AclWI	GGATC	1 cut(s)	420
AcsI	RAATTY	2 cut(s)	242, 293
AfaI	GTAC	1 cut(s)	171
AgsI	TTSAA	2 cut(s)	308, 437
AluBI	AGCT	4 cut(s)	89, 125, 304, 364
AluI	AGCT	4 cut(s)	89, 125, 304, 364
Alw21I	GWGCWC	1 cut(s)	91
Alw26I	GTCTC	1 cut(s)	486
AlwI	GGATC	1 cut(s)	420
AoxI	GGCC	1 cut(s)	74
ApeKI	GCWGC	1 cut(s)	61
ApoI	RAATTY	2 cut(s)	242, 293
ArsI	GACNNNNNNTTYG	2 cut(s)	266, 298
Asp700I	GAANNNNTTC	2 cut(s)	112, 459
AsuII	TTCGAA	1 cut(s)	106
AxyI	CCTNAGG	1 cut(s)	36
BanII	GRGCYC	1 cut(s)	91
Bbv12I	GWGCWC	1 cut(s)	91
BbvCI	CCTCAGC	1 cut(s)	268
BbvI	GCAGC	1 cut(s)	48
BccI	CCATC	2 cut(s)	43, 122
BcoDI	GTCTC	1 cut(s)	486
BfmI	CTRYAG	3 cut(s)	62, 118, 223
BisI	GCNGC	1 cut(s)	62
BlsI	GCNGC	1 cut(s)	63
BmiI	GGNNCC	1 cut(s)	54
BmsI	GCATC	1 cut(s)	36
Bpu10I	CCTNAGC	1 cut(s)	268
Bpu14I	TTCGAA	1 cut(s)	106
BsaI	GGTCTC	1 cut(s)	486
Bse21I	CCTNAGG	1 cut(s)	36
Bse3DI	GCAATG	1 cut(s)	17
BseMI	GCAATG	1 cut(s)	17
BseMII	CTCAG	2 cut(s)	177, 282
BseRI	GAGGAG	1 cut(s)	293
BseXI	GCAGC	1 cut(s)	48
BseYI	CCCAGC	1 cut(s)	364
Bsh1236I	CGCG	1 cut(s)	345
BshFI	GGCC	1 cut(s)	76
BsiHKAI	GWGCWC	1 cut(s)	91
BsmAI	GTCTC	1 cut(s)	486
BsnI	GGCC	1 cut(s)	76
Bso31I	GGTCTC	1 cut(s)	486
Bsp119I	TTCGAA	1 cut(s)	106
Bsp1286I	GDGCHC	1 cut(s)	91
Bsp143I	GATC	2 cut(s)	253, 425
BspANI	GGCC	1 cut(s)	76
BspCNI	CTCAG	2 cut(s)	178, 281
BspFNI	CGCG	1 cut(s)	345
BspLI	GGNNCC	1 cut(s)	54
BspMAI	CTGCAG	2 cut(s)	66, 122
BspPI	GGATC	1 cut(s)	420
BspT104I	TTCGAA	1 cut(s)	106
BspTNI	GGTCTC	1 cut(s)	486
BsrDI	GCAATG	1 cut(s)	17
BssMI	GATC	2 cut(s)	253, 425
BstBI	TTCGAA	1 cut(s)	106
BstC8I	GCNNGC	1 cut(s)	238
BstDEI	CTNAG	3 cut(s)	36, 186, 268
BstFNI	CGCG	1 cut(s)	345
BstKTI	GATC	2 cut(s)	256, 428
BstMAI	GTCTC	1 cut(s)	486
BstMBI	GATC	2 cut(s)	253, 425
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 237
BstSFI	CTRYAG	3 cut(s)	62, 118, 223
BstUI	CGCG	1 cut(s)	345
BstV1I	GCAGC	1 cut(s)	48
BstX2I	RGATCY	1 cut(s)	425
BstYI	RGATCY	1 cut(s)	425
Bsu36I	CCTNAGG	1 cut(s)	36
BsuRI	GGCC	1 cut(s)	76
Cac8I	GCNNGC	1 cut(s)	238
Csp6I	GTAC	1 cut(s)	170
CviAII	CATG	1 cut(s)	232
CviQI	GTAC	1 cut(s)	170
DdeI	CTNAG	3 cut(s)	36, 186, 268
DpnI	GATC	2 cut(s)	255, 427
DpnII	GATC	2 cut(s)	253, 425
DraI	TTTAAA	1 cut(s)	100
Ecl136II	GAGCTC	1 cut(s)	89
Eco24I	GRGCYC	1 cut(s)	91
Eco31I	GGTCTC	1 cut(s)	486
Eco53kI	GAGCTC	1 cut(s)	89
Eco81I	CCTNAGG	1 cut(s)	36
EcoICRI	GAGCTC	1 cut(s)	89
EcoT38I	GRGCYC	1 cut(s)	91
FaeI	CATG	1 cut(s)	235
FalI	AAGNNNNNCTT	4 cut(s)	143, 175, 444, 476
FatI	CATG	1 cut(s)	231
Fnu4HI	GCNGC	1 cut(s)	62
FriOI	GRGCYC	1 cut(s)	91
Fsp4HI	GCNGC	1 cut(s)	62
GluI	GCNGC	1 cut(s)	62
GsaI	CCCAGC	1 cut(s)	368
HaeIII	GGCC	1 cut(s)	76
Hin1II	CATG	1 cut(s)	235
HincII	GTYRAC	1 cut(s)	285
HindII	GTYRAC	1 cut(s)	285
HinfI	GANTC	1 cut(s)	281
Hpy166II	GTNNAC	1 cut(s)	285
Hpy188I	TCNGA	2 cut(s)	187, 331
Hpy8I	GTNNAC	1 cut(s)	285
HpyCH4IV	ACGT	1 cut(s)	195
HpyCH4V	TGCA	5 cut(s)	22, 64, 120, 142, 472
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 237
HpyF3I	CTNAG	3 cut(s)	36, 186, 268
HpySE526I	ACGT	1 cut(s)	195
Hsp92II	CATG	1 cut(s)	235
Kzo9I	GATC	2 cut(s)	253, 425
LmnI	GCTCC	1 cut(s)	58
LpnPI	CCDG	6 cut(s)	130, 264, 350, 360, 372, 374
Lsp1109I	GCAGC	1 cut(s)	48
LweI	GCATC	1 cut(s)	36
MaeII	ACGT	1 cut(s)	195
MalI	GATC	2 cut(s)	255, 427
MboI	GATC	2 cut(s)	253, 425
MboII	GAAGA	1 cut(s)	464
MflI	RGATCY	1 cut(s)	425
MhlI	GDGCHC	1 cut(s)	91
MluCI	AATT	3 cut(s)	242, 293, 505
MlyI	GAGTC	1 cut(s)	290
MnlI	CCTC	8 cut(s)	160, 271, 273, 277, 394, 409, 436, 471
MroXI	GAANNNNTTC	2 cut(s)	112, 459
MseI	TTAA	1 cut(s)	99
MspA1I	CMGCKG	1 cut(s)	364
MvnI	CGCG	1 cut(s)	345
MwoI	GCNNNNNNNGC	2 cut(s)	50, 237
NdeII	GATC	2 cut(s)	253, 425
NlaIII	CATG	1 cut(s)	235
NlaIV	GGNNCC	1 cut(s)	54
NspV	TTCGAA	1 cut(s)	106
PdmI	GAANNNNTTC	2 cut(s)	112, 459
PkrI	GCNGC	1 cut(s)	63
PleI	GAGTC	1 cut(s)	289
PpsI	GAGTC	1 cut(s)	289
Psp124BI	GAGCTC	1 cut(s)	91
PspFI	CCCAGC	1 cut(s)	364
PspN4I	GGNNCC	1 cut(s)	54
PstI	CTGCAG	2 cut(s)	66, 122
PsuI	RGATCY	1 cut(s)	425
PvuII	CAGCTG	1 cut(s)	364
RsaI	GTAC	1 cut(s)	171
RsaNI	GTAC	1 cut(s)	170
SacI	GAGCTC	1 cut(s)	91
SaqAI	TTAA	1 cut(s)	99
SatI	GCNGC	1 cut(s)	62
Sau3AI	GATC	2 cut(s)	253, 425
SchI	GAGTC	1 cut(s)	290
SduI	GDGCHC	1 cut(s)	91
SfaNI	GCATC	1 cut(s)	36
SfcI	CTRYAG	3 cut(s)	62, 118, 223
SfuI	TTCGAA	1 cut(s)	106
Sse9I	AATT	3 cut(s)	242, 293, 505
SstI	GAGCTC	1 cut(s)	91
TaiI	ACGT	1 cut(s)	198
TaqI	TCGA	2 cut(s)	106, 399
TaqII	GACCGA	1 cut(s)	501
TasI	AATT	3 cut(s)	242, 293, 505
Tru1I	TTAA	1 cut(s)	99
Tru9I	TTAA	1 cut(s)	99
TseI	GCWGC	1 cut(s)	61
TspDTI	ATGAA	3 cut(s)	286, 333, 369
TspGWI	ACGGA	1 cut(s)	418
XapI	RAATTY	2 cut(s)	242, 293
XmnI	GAANNNNTTC	2 cut(s)	112, 459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.