Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0017228

Physical Location & Seq

Genomic Coordinates Forward (+)

28340718 .. 28341179

Gene Structure 462 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG264100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGTTCCAATGCCATCTAACCAGAAAGCCTATATTTCATGCAGAGCTCATGATGGGTTCGCCATGCACAAAAAGAACAAGGCCAGCAACTTTTATGAGCTGCTTTCACTTGGTTCTGAGAATAACAATAAGGTAGGCTTGCATGAGATAAAGAAAGCCTACAGAAACATGGCCCTTCAGTTCCACCCTGATGTTGTCCCTCCCTCTGCAAAAGAGGAGTCTACAAGACGATTCATCGAGCTTCAAAAGGCATATGAAACCCTTTCAGACCCGGTTTCGCGTCAAATATACGATTACCAGTTGTGTTTGGGGAGCTCATCGGTAGGGTTGGGAGTGGAGGGATTATGTATGGATCGGGTGAAGAGATCCGTGTTCAGCAAGGAGGTGTGGGAAGAACAACTTCGGGGATTGCATATTAAGTCTCAAACTCGATCGGGGAGGAAAAGCTACAGGCCGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006109 GO:0006457 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0009987 GO:0010322 GO:0010565 GO:0010675 GO:0019216 GO:0019220 GO:0019222 GO:0019747 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046890 GO:0050789 GO:0050790 GO:0050794 GO:0051174 GO:0051338 GO:0061077 GO:0062012 GO:0065007 GO:0065009 GO:0071071 GO:0080090 GO:1902395 GO:1903725

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

153

Amino Acids

17.51

Weight (kDa)

9.49

Isoelectric Point (pI)

67.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	30 - 98	1.2e-17	DnaJ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0017228)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21470
malus_domestica	MD00G1041000.v1.1
prunus_persica	Prupe.6G180400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0115291
rosa_laevigata	RLG00000018174
rosa_multiflora	Rmu_sc0006112.1_g000011
rosa_roxburghii	Rroxscaffold_2G00130830
rosa_rugosa	Rorug02G0195600
rosa_samantha	Rh2AG253900 Rh2BG264100 Rh2CG258500 Rh2DG262000
rosa_wichuraiana	Rw2G019820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	221
AccII	CGCG	1 cut(s)	280
AclWI	GGATC	2 cut(s)	360, 360
AcuI	CTGAAG	1 cut(s)	161
AgsI	TTSAA	1 cut(s)	245
AluBI	AGCT	5 cut(s)	47, 100, 241, 315, 447
AluI	AGCT	5 cut(s)	47, 100, 241, 315, 447
Alw21I	GWGCWC	2 cut(s)	49, 317
Alw26I	GTCTC	1 cut(s)	426
AlwI	GGATC	2 cut(s)	360, 360
AoxI	GGCC	3 cut(s)	81, 171, 452
ApeKI	GCWGC	1 cut(s)	100
ArsI	GACNNNNNNTTYG	2 cut(s)	203, 235
Asp700I	GAANNNNTTC	1 cut(s)	399
AspS9I	GGNCC	1 cut(s)	172
AsuC2I	CCSGG	1 cut(s)	272
AsuHPI	GGTGA	1 cut(s)	370
BanII	GRGCYC	2 cut(s)	49, 317
Bbv12I	GWGCWC	2 cut(s)	49, 317
BbvI	GCAGC	1 cut(s)	87
BccI	CCATC	2 cut(s)	22, 47
BcnI	CCSGG	1 cut(s)	272
BcoDI	GTCTC	1 cut(s)	426
BfmI	CTRYAG	2 cut(s)	160, 448
BisI	GCNGC	1 cut(s)	101
BlsI	GCNGC	1 cut(s)	102
Bme1390I	CCNGG	1 cut(s)	272
BmgT120I	GGNCC	1 cut(s)	172
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	272
BpuMI	CCSGG	1 cut(s)	272
Bse1I	ACTGG	1 cut(s)	298
BseMII	CTCAG	1 cut(s)	108
BseNI	ACTGG	1 cut(s)	298
BseRI	GAGGAG	1 cut(s)	230
BseXI	GCAGC	1 cut(s)	87
Bsh1236I	CGCG	1 cut(s)	280
Bsh1285I	CGRYCG	1 cut(s)	434
BshFI	GGCC	3 cut(s)	83, 173, 454
BsiEI	CGRYCG	1 cut(s)	434
BsiHKAI	GWGCWC	2 cut(s)	49, 317
BsiSI	CCGG	1 cut(s)	272
BslFI	GGGAC	1 cut(s)	182
BsmAI	GTCTC	1 cut(s)	426
BsmFI	GGGAC	1 cut(s)	182
BsnI	GGCC	3 cut(s)	83, 173, 454
Bsp1286I	GDGCHC	2 cut(s)	49, 317
Bsp143I	GATC	3 cut(s)	352, 365, 431
BspANI	GGCC	3 cut(s)	83, 173, 454
BspCNI	CTCAG	1 cut(s)	109
BspFNI	CGCG	1 cut(s)	280
BspHI	TCATGA	1 cut(s)	49
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	2 cut(s)	360, 360
BsrI	ACTGG	1 cut(s)	298
BssMI	GATC	3 cut(s)	352, 365, 431
Bst6I	CTCTTC	1 cut(s)	356
BstC8I	GCNNGC	2 cut(s)	85, 140
BstDEI	CTNAG	1 cut(s)	117
BstFNI	CGCG	1 cut(s)	280
BstKTI	GATC	3 cut(s)	355, 368, 434
BstMAI	GTCTC	1 cut(s)	426
BstMBI	GATC	3 cut(s)	352, 365, 431
BstMCI	CGRYCG	1 cut(s)	434
BstSCI	CCNGG	1 cut(s)	270
BstSFI	CTRYAG	2 cut(s)	160, 448
BstUI	CGCG	1 cut(s)	280
BstV1I	GCAGC	1 cut(s)	87
BstX2I	RGATCY	1 cut(s)	365
BstYI	RGATCY	1 cut(s)	365
BsuRI	GGCC	3 cut(s)	83, 173, 454
Cac8I	GCNNGC	2 cut(s)	85, 140
CciI	TCATGA	1 cut(s)	49
Cfr13I	GGNCC	1 cut(s)	172
CseI	GACGC	1 cut(s)	269
CviAII	CATG	5 cut(s)	39, 50, 64, 143, 169
DdeI	CTNAG	1 cut(s)	117
DpnI	GATC	3 cut(s)	354, 367, 433
DpnII	GATC	3 cut(s)	352, 365, 431
Eam1104I	CTCTTC	1 cut(s)	356
EarI	CTCTTC	1 cut(s)	356
Ecl136II	GAGCTC	2 cut(s)	47, 315
Eco24I	GRGCYC	2 cut(s)	49, 317
Eco53kI	GAGCTC	2 cut(s)	47, 315
Eco57I	CTGAAG	1 cut(s)	161
EcoICRI	GAGCTC	2 cut(s)	47, 315
EcoT38I	GRGCYC	2 cut(s)	49, 317
FaeI	CATG	5 cut(s)	42, 53, 67, 146, 172
FalI	AAGNNNNNCTT	4 cut(s)	122, 154, 384, 416
FaqI	GGGAC	1 cut(s)	182
FatI	CATG	5 cut(s)	38, 49, 63, 142, 168
FauNDI	CATATG	1 cut(s)	253
FblI	GTMKAC	1 cut(s)	221
Fnu4HI	GCNGC	1 cut(s)	101
FriOI	GRGCYC	2 cut(s)	49, 317
Fsp4HI	GCNGC	1 cut(s)	101
GluI	GCNGC	1 cut(s)	101
HaeIII	GGCC	3 cut(s)	83, 173, 454
HapII	CCGG	1 cut(s)	272
HgaI	GACGC	1 cut(s)	269
Hin1II	CATG	5 cut(s)	42, 53, 67, 146, 172
HinfI	GANTC	2 cut(s)	218, 231
HpaII	CCGG	1 cut(s)	272
HphI	GGTGA	1 cut(s)	370
Hpy166II	GTNNAC	1 cut(s)	222
Hpy188I	TCNGA	2 cut(s)	118, 268
Hpy188III	TCNNGA	1 cut(s)	50
Hpy8I	GTNNAC	1 cut(s)	222
HpyAV	CCTTC	1 cut(s)	185
HpyCH4V	TGCA	5 cut(s)	42, 67, 142, 209, 412
HpyF3I	CTNAG	1 cut(s)	117
Hsp92II	CATG	5 cut(s)	42, 53, 67, 146, 172
Kzo9I	GATC	3 cut(s)	352, 365, 431
LmnI	GCTCC	1 cut(s)	312
LpnPI	CCDG	6 cut(s)	35, 97, 201, 285, 311, 436
Lsp1109I	GCAGC	1 cut(s)	87
MalI	GATC	3 cut(s)	354, 367, 433
MboI	GATC	3 cut(s)	352, 365, 431
MboII	GAAGA	2 cut(s)	373, 404
MflI	RGATCY	1 cut(s)	365
MhlI	GDGCHC	2 cut(s)	49, 317
MlyI	GAGTC	1 cut(s)	227
MnlI	CCTC	6 cut(s)	208, 210, 214, 331, 376, 432
MroXI	GAANNNNTTC	1 cut(s)	399
MseI	TTAA	1 cut(s)	417
MslI	CAYNNNNRTG	1 cut(s)	189
MspI	CCGG	1 cut(s)	272
MspR9I	CCNGG	1 cut(s)	272
MvnI	CGCG	1 cut(s)	280
NciI	CCSGG	1 cut(s)	272
NdeI	CATATG	1 cut(s)	253
NdeII	GATC	3 cut(s)	352, 365, 431
NlaIII	CATG	5 cut(s)	42, 53, 67, 146, 172
NlaIV	GGNNCC	1 cut(s)	6
PagI	TCATGA	1 cut(s)	49
PdmI	GAANNNNTTC	1 cut(s)	399
PfeI	GAWTC	1 cut(s)	231
PkrI	GCNGC	1 cut(s)	102
Ple19I	CGATCG	1 cut(s)	434
PleI	GAGTC	1 cut(s)	226
PpsI	GAGTC	1 cut(s)	226
Psp124BI	GAGCTC	2 cut(s)	49, 317
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	172
PsuI	RGATCY	1 cut(s)	365
PvuI	CGATCG	1 cut(s)	434
RseI	CAYNNNNRTG	1 cut(s)	189
SacI	GAGCTC	2 cut(s)	49, 317
SaqAI	TTAA	1 cut(s)	417
SatI	GCNGC	1 cut(s)	101
Sau3AI	GATC	3 cut(s)	352, 365, 431
Sau96I	GGNCC	1 cut(s)	172
SchI	GAGTC	1 cut(s)	227
ScrFI	CCNGG	1 cut(s)	272
SduI	GDGCHC	2 cut(s)	49, 317
SetI	ASST	7 cut(s)	49, 102, 135, 243, 317, 387, 449
SfcI	CTRYAG	2 cut(s)	160, 448
SmiMI	CAYNNNNRTG	1 cut(s)	189
SstI	GAGCTC	2 cut(s)	49, 317
StyD4I	CCNGG	1 cut(s)	270
TaqI	TCGA	2 cut(s)	237, 430
TfiI	GAWTC	1 cut(s)	231
Tru1I	TTAA	1 cut(s)	417
Tru9I	TTAA	1 cut(s)	417
TseI	GCWGC	1 cut(s)	100
TspDTI	ATGAA	3 cut(s)	27, 223, 270
TspGWI	ACGGA	1 cut(s)	358
XmiI	GTMKAC	1 cut(s)	221
XmnI	GAANNNNTTC	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.