Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0017228

Physical Location & Seq

Genomic Coordinates Forward (+)

28932257 .. 28933291

Gene Structure 1035 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG253900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGAACATGGAAATCTCCTTCCAAATCATCAATCCTAAGCTAGCAACTATGGTTCCAATGCCATCTAACCAGAAAGCCTATATTTCATGCAGAGCTCATGATGGGTTCGCCATTCACAAAAAGAACAAGGCCAGCAACTTTTATGAGCTGCTTTCACTTGGTTCTGAGAATAACAATAAGGTAGGCTTGCATGAGATAAAGAAAGCCTACAGAAACATGGCCCTTCAGTTCCACCCTGATGTTGTCCCTCCCTCTGCAAAAGAGGAGTCTACAAGACGATTCATCGAGCTTCAAAAGGCATATAAAACCCTTTCAGACCCGGTTTCGCGTCAAATATACGATTACCAGTTGTGTTTGGGGAGCTCATCGGTAGGGTTGGGAGCGGAGGGATTATGTATGGATCGGGTGAAGAGATCCGTGTTCAGCAAGGAGGTGTGGGAAGAACAACTTCGGGGATTGCATATTAAGTCTCAAACTCGATCGGGGAGGAAAAGCTACAGGCCGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006109 GO:0006457 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0009987 GO:0010322 GO:0010565 GO:0010675 GO:0019216 GO:0019220 GO:0019222 GO:0019747 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046890 GO:0050789 GO:0050790 GO:0050794 GO:0051174 GO:0051338 GO:0061077 GO:0062012 GO:0065007 GO:0065009 GO:0071071 GO:0080090 GO:1902395 GO:1903725

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

169

Amino Acids

19.3

Weight (kDa)

9.63

Isoelectric Point (pI)

60.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	46 - 114	4.1e-17	DnaJ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0017228)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21470
malus_domestica	MD00G1041000.v1.1
prunus_persica	Prupe.6G180400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0115291
rosa_laevigata	RLG00000018174
rosa_multiflora	Rmu_sc0006112.1_g000011
rosa_roxburghii	Rroxscaffold_2G00130830
rosa_rugosa	Rorug02G0195600
rosa_samantha	Rh2AG253900 Rh2BG264100 Rh2CG258500 Rh2DG262000
rosa_wichuraiana	Rw2G019820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	383
AccI	GTMKAC	1 cut(s)	269
AccII	CGCG	1 cut(s)	328
AciI	CCGC	1 cut(s)	383
AclWI	GGATC	2 cut(s)	408, 408
AcuI	CTGAAG	1 cut(s)	209
AgsI	TTSAA	1 cut(s)	293
AluBI	AGCT	6 cut(s)	40, 95, 148, 289, 363, 495
AluI	AGCT	6 cut(s)	40, 95, 148, 289, 363, 495
Alw21I	GWGCWC	2 cut(s)	97, 365
Alw26I	GTCTC	1 cut(s)	474
AlwI	GGATC	2 cut(s)	408, 408
AoxI	GGCC	3 cut(s)	129, 219, 500
ApeKI	GCWGC	1 cut(s)	148
ArsI	GACNNNNNNTTYG	2 cut(s)	251, 283
Asp700I	GAANNNNTTC	1 cut(s)	447
AspS9I	GGNCC	1 cut(s)	220
AsuC2I	CCSGG	1 cut(s)	320
AsuHPI	GGTGA	1 cut(s)	418
AsuNHI	GCTAGC	1 cut(s)	40
BanII	GRGCYC	2 cut(s)	97, 365
Bbv12I	GWGCWC	2 cut(s)	97, 365
BbvI	GCAGC	1 cut(s)	135
BccI	CCATC	2 cut(s)	70, 95
BcnI	CCSGG	1 cut(s)	320
BcoDI	GTCTC	1 cut(s)	474
BfaI	CTAG	1 cut(s)	41
BfmI	CTRYAG	2 cut(s)	208, 496
BisI	GCNGC	1 cut(s)	149
BlsI	GCNGC	1 cut(s)	150
Bme1390I	CCNGG	1 cut(s)	320
BmgT120I	GGNCC	1 cut(s)	220
BmiI	GGNNCC	1 cut(s)	54
BmrFI	CCNGG	1 cut(s)	320
BmtI	GCTAGC	1 cut(s)	44
Bpu10I	CCTNAGC	1 cut(s)	36
BpuMI	CCSGG	1 cut(s)	320
Bse1I	ACTGG	1 cut(s)	346
BseMII	CTCAG	1 cut(s)	156
BseNI	ACTGG	1 cut(s)	346
BseRI	GAGGAG	1 cut(s)	278
BseXI	GCAGC	1 cut(s)	135
Bsh1236I	CGCG	1 cut(s)	328
Bsh1285I	CGRYCG	1 cut(s)	482
BshFI	GGCC	3 cut(s)	131, 221, 502
BsiEI	CGRYCG	1 cut(s)	482
BsiHKAI	GWGCWC	2 cut(s)	97, 365
BsiSI	CCGG	1 cut(s)	320
BslFI	GGGAC	1 cut(s)	230
BsmAI	GTCTC	1 cut(s)	474
BsmFI	GGGAC	1 cut(s)	230
BsnI	GGCC	3 cut(s)	131, 221, 502
Bsp1286I	GDGCHC	2 cut(s)	97, 365
Bsp143I	GATC	3 cut(s)	400, 413, 479
BspACI	CCGC	1 cut(s)	383
BspANI	GGCC	3 cut(s)	131, 221, 502
BspCNI	CTCAG	1 cut(s)	157
BspFNI	CGCG	1 cut(s)	328
BspHI	TCATGA	1 cut(s)	97
BspLI	GGNNCC	1 cut(s)	54
BspOI	GCTAGC	1 cut(s)	44
BspPI	GGATC	2 cut(s)	408, 408
BsrBI	CCGCTC	1 cut(s)	383
BsrI	ACTGG	1 cut(s)	346
BssMI	GATC	3 cut(s)	400, 413, 479
Bst6I	CTCTTC	1 cut(s)	404
BstC8I	GCNNGC	3 cut(s)	42, 133, 188
BstDEI	CTNAG	2 cut(s)	36, 165
BstFNI	CGCG	1 cut(s)	328
BstKTI	GATC	3 cut(s)	403, 416, 482
BstMAI	GTCTC	1 cut(s)	474
BstMBI	GATC	3 cut(s)	400, 413, 479
BstMCI	CGRYCG	1 cut(s)	482
BstSCI	CCNGG	1 cut(s)	318
BstSFI	CTRYAG	2 cut(s)	208, 496
BstUI	CGCG	1 cut(s)	328
BstV1I	GCAGC	1 cut(s)	135
BstX2I	RGATCY	1 cut(s)	413
BstYI	RGATCY	1 cut(s)	413
BsuRI	GGCC	3 cut(s)	131, 221, 502
Cac8I	GCNNGC	3 cut(s)	42, 133, 188
CciI	TCATGA	1 cut(s)	97
Cfr13I	GGNCC	1 cut(s)	220
CseI	GACGC	1 cut(s)	317
CviAII	CATG	5 cut(s)	7, 87, 98, 191, 217
DdeI	CTNAG	2 cut(s)	36, 165
DpnI	GATC	3 cut(s)	402, 415, 481
DpnII	GATC	3 cut(s)	400, 413, 479
Eam1104I	CTCTTC	1 cut(s)	404
EarI	CTCTTC	1 cut(s)	404
Ecl136II	GAGCTC	2 cut(s)	95, 363
Eco24I	GRGCYC	2 cut(s)	97, 365
Eco53kI	GAGCTC	2 cut(s)	95, 363
Eco57I	CTGAAG	1 cut(s)	209
EcoICRI	GAGCTC	2 cut(s)	95, 363
EcoT38I	GRGCYC	2 cut(s)	97, 365
FaeI	CATG	5 cut(s)	10, 90, 101, 194, 220
FalI	AAGNNNNNCTT	4 cut(s)	170, 202, 432, 464
FaqI	GGGAC	1 cut(s)	230
FatI	CATG	5 cut(s)	6, 86, 97, 190, 216
FblI	GTMKAC	1 cut(s)	269
Fnu4HI	GCNGC	1 cut(s)	149
FriOI	GRGCYC	2 cut(s)	97, 365
Fsp4HI	GCNGC	1 cut(s)	149
FspBI	CTAG	1 cut(s)	41
GluI	GCNGC	1 cut(s)	149
HaeIII	GGCC	3 cut(s)	131, 221, 502
HapII	CCGG	1 cut(s)	320
HgaI	GACGC	1 cut(s)	317
Hin1II	CATG	5 cut(s)	10, 90, 101, 194, 220
HinfI	GANTC	2 cut(s)	266, 279
HpaII	CCGG	1 cut(s)	320
HphI	GGTGA	1 cut(s)	418
Hpy166II	GTNNAC	1 cut(s)	270
Hpy188I	TCNGA	2 cut(s)	166, 316
Hpy188III	TCNNGA	1 cut(s)	98
Hpy8I	GTNNAC	1 cut(s)	270
HpyAV	CCTTC	2 cut(s)	28, 233
HpyCH4V	TGCA	4 cut(s)	90, 190, 257, 460
HpyF3I	CTNAG	2 cut(s)	36, 165
Hsp92II	CATG	5 cut(s)	10, 90, 101, 194, 220
Kzo9I	GATC	3 cut(s)	400, 413, 479
LmnI	GCTCC	2 cut(s)	360, 380
LpnPI	CCDG	6 cut(s)	83, 145, 249, 333, 359, 484
Lsp1109I	GCAGC	1 cut(s)	135
MaeI	CTAG	1 cut(s)	41
MalI	GATC	3 cut(s)	402, 415, 481
MbiI	CCGCTC	1 cut(s)	383
MboI	GATC	3 cut(s)	400, 413, 479
MboII	GAAGA	2 cut(s)	421, 452
MflI	RGATCY	1 cut(s)	413
MhlI	GDGCHC	2 cut(s)	97, 365
MlyI	GAGTC	1 cut(s)	275
MnlI	CCTC	6 cut(s)	256, 258, 262, 379, 424, 480
MroXI	GAANNNNTTC	1 cut(s)	447
MseI	TTAA	1 cut(s)	465
MslI	CAYNNNNRTG	1 cut(s)	237
MspI	CCGG	1 cut(s)	320
MspR9I	CCNGG	1 cut(s)	320
MvnI	CGCG	1 cut(s)	328
NciI	CCSGG	1 cut(s)	320
NdeII	GATC	3 cut(s)	400, 413, 479
NheI	GCTAGC	1 cut(s)	40
NlaIII	CATG	5 cut(s)	10, 90, 101, 194, 220
NlaIV	GGNNCC	1 cut(s)	54
PagI	TCATGA	1 cut(s)	97
PdmI	GAANNNNTTC	1 cut(s)	447
PfeI	GAWTC	1 cut(s)	279
PkrI	GCNGC	1 cut(s)	150
Ple19I	CGATCG	1 cut(s)	482
PleI	GAGTC	1 cut(s)	274
PpsI	GAGTC	1 cut(s)	274
Psp124BI	GAGCTC	2 cut(s)	97, 365
PspN4I	GGNNCC	1 cut(s)	54
PspPI	GGNCC	1 cut(s)	220
PsuI	RGATCY	1 cut(s)	413
PvuI	CGATCG	1 cut(s)	482
RseI	CAYNNNNRTG	1 cut(s)	237
SacI	GAGCTC	2 cut(s)	97, 365
SaqAI	TTAA	1 cut(s)	465
SatI	GCNGC	1 cut(s)	149
Sau3AI	GATC	3 cut(s)	400, 413, 479
Sau96I	GGNCC	1 cut(s)	220
SchI	GAGTC	1 cut(s)	275
ScrFI	CCNGG	1 cut(s)	320
SduI	GDGCHC	2 cut(s)	97, 365
SetI	ASST	8 cut(s)	42, 97, 150, 183, 291, 365, 435, 497
SfcI	CTRYAG	2 cut(s)	208, 496
SmiMI	CAYNNNNRTG	1 cut(s)	237
SsiI	CCGC	1 cut(s)	383
SspMI	CTAG	1 cut(s)	41
SstI	GAGCTC	2 cut(s)	97, 365
StyD4I	CCNGG	1 cut(s)	318
TaqI	TCGA	2 cut(s)	285, 478
TfiI	GAWTC	1 cut(s)	279
Tru1I	TTAA	1 cut(s)	465
Tru9I	TTAA	1 cut(s)	465
TseI	GCWGC	1 cut(s)	148
TspDTI	ATGAA	3 cut(s)	17, 75, 271
TspGWI	ACGGA	1 cut(s)	406
XmiI	GTMKAC	1 cut(s)	269
XmnI	GAANNNNTTC	1 cut(s)	447
XspI	CTAG	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.