Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0017228

Physical Location & Seq

Genomic Coordinates Forward (+)

7085940 .. 7086440

Gene Structure 501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1041000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGAAATCTCCTTCCAATTGCAAAGCAACAATCCAATGCTGCAAAAGGCAACGCCGAAGAAAAATTCTCATAGTAGTTATATGATTCAAACTATTTCATGCAGAGGTGATGGGTTAGAGATGCATGCAAAGAAGGCTAACTTTTATGAGGTACTTTCTCTTGGTTCTGAAAATAACATAGACTTGCATGACATAAAGAAAGCCTACAAAAGCATGGCTCGTCAATTTCATCCTGATGTTTGTGCTCCGTCGGCAAAAGAGGAGTCTACCAGAAAATTCATTGAGCTTCAAAAAGCATATGAAACACTTTCCGACCCGGTTTCGCGTCAAATGTATGATTATCAGTTGAGTTTGGCTGACTCTTCGTTAGGGTTAGGGGTGGAGGGGTTTTGTACGGAGGTTAAGAGATCCATATTTCAAAGGGAAGTGTGGGAAGAACAACTTCGTGGATTGCATAAAAGATCACAAACAAGAAGGGAAAGGCGGTCCATGCAGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006109 GO:0006457 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0009987 GO:0010322 GO:0010565 GO:0010675 GO:0019216 GO:0019220 GO:0019222 GO:0019747 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046890 GO:0050789 GO:0050790 GO:0050794 GO:0051174 GO:0051338 GO:0061077 GO:0062012 GO:0065007 GO:0065009 GO:0071071 GO:0080090 GO:1902395 GO:1903725

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

167

Amino Acids

19.23

Weight (kDa)

8.96

Isoelectric Point (pI)

75.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	47 - 113	4.6e-18	DnaJ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0017228)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21470
malus_domestica	MD00G1041000.v1.1
prunus_persica	Prupe.6G180400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0115291
rosa_laevigata	RLG00000018174
rosa_multiflora	Rmu_sc0006112.1_g000011
rosa_roxburghii	Rroxscaffold_2G00130830
rosa_rugosa	Rorug02G0195600
rosa_samantha	Rh2AG253900 Rh2BG264100 Rh2CG258500 Rh2DG262000
rosa_wichuraiana	Rw2G019820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	266
AccII	CGCG	1 cut(s)	325
AciI	CCGC	1 cut(s)	484
AclWI	GGATC	1 cut(s)	402
AcsI	RAATTY	2 cut(s)	64, 275
AfaI	GTAC	2 cut(s)	153, 394
AgsI	TTSAA	3 cut(s)	89, 290, 419
AluBI	AGCT	1 cut(s)	286
AluI	AGCT	1 cut(s)	286
Alw21I	GWGCWC	1 cut(s)	247
AlwI	GGATC	1 cut(s)	402
ApeKI	GCWGC	1 cut(s)	40
ApoI	RAATTY	2 cut(s)	64, 275
ArsI	GACNNNNNNTTYG	2 cut(s)	248, 280
Asp700I	GAANNNNTTC	1 cut(s)	441
AspS9I	GGNCC	1 cut(s)	486
AsuC2I	CCSGG	1 cut(s)	317
AsuHPI	GGTGA	1 cut(s)	119
AvaII	GGWCC	1 cut(s)	486
Bbv12I	GWGCWC	1 cut(s)	247
BbvI	GCAGC	1 cut(s)	27
BccI	CCATC	1 cut(s)	104
BcnI	CCSGG	1 cut(s)	317
BisI	GCNGC	1 cut(s)	41
BlsI	GCNGC	1 cut(s)	42
Bme1390I	CCNGG	1 cut(s)	317
Bme18I	GGWCC	1 cut(s)	486
BmgT120I	GGNCC	1 cut(s)	486
BmrFI	CCNGG	1 cut(s)	317
BmsI	GCATC	1 cut(s)	111
BpuMI	CCSGG	1 cut(s)	317
BseGI	GGATG	1 cut(s)	229
BseRI	GAGGAG	1 cut(s)	275
BseXI	GCAGC	1 cut(s)	27
Bsh1236I	CGCG	1 cut(s)	325
BsiHKAI	GWGCWC	1 cut(s)	247
BsiSI	CCGG	1 cut(s)	317
Bsp1286I	GDGCHC	1 cut(s)	247
Bsp143I	GATC	2 cut(s)	407, 461
BspACI	CCGC	1 cut(s)	484
BspFNI	CGCG	1 cut(s)	325
BspPI	GGATC	1 cut(s)	402
BssMI	GATC	2 cut(s)	407, 461
Bst6I	CTCTTC	1 cut(s)	367
BstC8I	GCNNGC	1 cut(s)	126
BstF5I	GGATG	1 cut(s)	229
BstFNI	CGCG	1 cut(s)	325
BstKTI	GATC	2 cut(s)	410, 464
BstMBI	GATC	2 cut(s)	407, 461
BstMWI	GCNNNNNNNGC	3 cut(s)	134, 251, 490
BstNSI	RCATGY	1 cut(s)	128
BstSCI	CCNGG	1 cut(s)	315
BstUI	CGCG	1 cut(s)	325
BstV1I	GCAGC	1 cut(s)	27
BstX2I	RGATCY	1 cut(s)	407
BstYI	RGATCY	1 cut(s)	407
BtsCI	GGATG	1 cut(s)	229
Cac8I	GCNNGC	1 cut(s)	126
Cfr13I	GGNCC	1 cut(s)	486
CseI	GACGC	1 cut(s)	314
Csp6I	GTAC	2 cut(s)	152, 393
CviAII	CATG	5 cut(s)	99, 125, 188, 214, 490
CviJI	RGCY	5 cut(s)	137, 203, 218, 286, 356
CviKI_1	RGCY	5 cut(s)	137, 203, 218, 286, 356
CviQI	GTAC	2 cut(s)	152, 393
DpnI	GATC	2 cut(s)	409, 463
DpnII	GATC	2 cut(s)	407, 461
Eam1104I	CTCTTC	1 cut(s)	367
EarI	CTCTTC	1 cut(s)	367
Eco47I	GGWCC	1 cut(s)	486
EcoT22I	ATGCAT	1 cut(s)	126
FaeI	CATG	5 cut(s)	102, 128, 191, 217, 493
FalI	AAGNNNNNCTT	4 cut(s)	125, 157, 426, 458
FatI	CATG	5 cut(s)	98, 124, 187, 213, 489
FauNDI	CATATG	1 cut(s)	298
FblI	GTMKAC	1 cut(s)	266
Fnu4HI	GCNGC	1 cut(s)	41
FokI	GGATG	1 cut(s)	216
Fsp4HI	GCNGC	1 cut(s)	41
GluI	GCNGC	1 cut(s)	41
HapII	CCGG	1 cut(s)	317
HgaI	GACGC	1 cut(s)	314
Hin1II	CATG	5 cut(s)	102, 128, 191, 217, 493
HinfI	GANTC	3 cut(s)	85, 263, 359
HpaII	CCGG	1 cut(s)	317
HphI	GGTGA	1 cut(s)	119
Hpy166II	GTNNAC	1 cut(s)	267
Hpy188I	TCNGA	2 cut(s)	169, 313
Hpy188III	TCNNGA	1 cut(s)	233
Hpy8I	GTNNAC	1 cut(s)	267
Hpy99I	CGWCG	1 cut(s)	253
HpyAV	CCTTC	3 cut(s)	22, 127, 468
HpyCH4V	TGCA	8 cut(s)	22, 43, 102, 124, 128, 187, 454, 493
HpyF10VI	GCNNNNNNNGC	3 cut(s)	134, 251, 490
Hsp92II	CATG	5 cut(s)	102, 128, 191, 217, 493
Kzo9I	GATC	2 cut(s)	407, 461
LmnI	GCTCC	1 cut(s)	250
LpnPI	CCDG	3 cut(s)	246, 283, 330
Lsp1109I	GCAGC	1 cut(s)	27
LweI	GCATC	1 cut(s)	111
MalI	GATC	2 cut(s)	409, 463
MboI	GATC	2 cut(s)	407, 461
MboII	GAAGA	3 cut(s)	70, 354, 446
MfeI	CAATTG	1 cut(s)	17
MflI	RGATCY	1 cut(s)	407
MhlI	GDGCHC	1 cut(s)	247
MluCI	AATT	5 cut(s)	17, 64, 224, 275, 496
MlyI	GAGTC	2 cut(s)	272, 353
MmeI	TCCRAC	1 cut(s)	336
MnlI	CCTC	5 cut(s)	98, 142, 253, 376, 391
Mph1103I	ATGCAT	1 cut(s)	126
MroXI	GAANNNNTTC	1 cut(s)	441
MseI	TTAA	2 cut(s)	402, 499
MslI	CAYNNNNRTG	1 cut(s)	234
MspI	CCGG	1 cut(s)	317
MspR9I	CCNGG	1 cut(s)	317
MunI	CAATTG	1 cut(s)	17
MvnI	CGCG	1 cut(s)	325
MwoI	GCNNNNNNNGC	3 cut(s)	134, 251, 490
NciI	CCSGG	1 cut(s)	317
NdeI	CATATG	1 cut(s)	298
NdeII	GATC	2 cut(s)	407, 461
NlaIII	CATG	5 cut(s)	102, 128, 191, 217, 493
NsiI	ATGCAT	1 cut(s)	126
NspI	RCATGY	1 cut(s)	128
PaeI	GCATGC	1 cut(s)	128
PdmI	GAANNNNTTC	1 cut(s)	441
PfeI	GAWTC	1 cut(s)	85
PkrI	GCNGC	1 cut(s)	42
PleI	GAGTC	2 cut(s)	271, 353
PpsI	GAGTC	2 cut(s)	271, 353
PspPI	GGNCC	1 cut(s)	486
PsuI	RGATCY	1 cut(s)	407
RsaI	GTAC	2 cut(s)	153, 394
RsaNI	GTAC	2 cut(s)	152, 393
RseI	CAYNNNNRTG	1 cut(s)	234
SaqAI	TTAA	2 cut(s)	402, 499
SatI	GCNGC	1 cut(s)	41
Sau3AI	GATC	2 cut(s)	407, 461
Sau96I	GGNCC	1 cut(s)	486
SchI	GAGTC	2 cut(s)	272, 353
ScrFI	CCNGG	1 cut(s)	317
SduI	GDGCHC	1 cut(s)	247
SetI	ASST	4 cut(s)	109, 153, 288, 402
SfaNI	GCATC	1 cut(s)	111
SinI	GGWCC	1 cut(s)	486
SmiMI	CAYNNNNRTG	1 cut(s)	234
SphI	GCATGC	1 cut(s)	128
Sse9I	AATT	5 cut(s)	17, 64, 224, 275, 496
SsiI	CCGC	1 cut(s)	484
StyD4I	CCNGG	1 cut(s)	315
TasI	AATT	5 cut(s)	17, 64, 224, 275, 496
TfiI	GAWTC	1 cut(s)	85
Tru1I	TTAA	2 cut(s)	402, 499
Tru9I	TTAA	2 cut(s)	402, 499
TseI	GCWGC	1 cut(s)	40
TspDTI	ATGAA	4 cut(s)	87, 218, 268, 315
TspGWI	ACGGA	2 cut(s)	237, 410
VpaK11BI	GGWCC	1 cut(s)	486
XapI	RAATTY	2 cut(s)	64, 275
XceI	RCATGY	1 cut(s)	128
XmiI	GTMKAC	1 cut(s)	266
XmnI	GAANNNNTTC	1 cut(s)	441
Zsp2I	ATGCAT	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.