Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0017228

Physical Location & Seq

Genomic Coordinates Forward (+)

26404901 .. 26405404

Gene Structure 504 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018174

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGAAATCTCCTTCAAAATCATCAATCCTAAGCTAGCAAGTATGGTTCCAATGCCATCGAATCAGAAAGCCTATATTTCATGCAGAGCTCATGATGGGTTAGCCATGCACAAAAAGAACAAGGCCAGCAACTTTTATGAGCTGCTTTCACTTGGTTCTGAAAATCACAATAAGGTAGGCTTGCATGAGATAAAGAAAGCCTACAGAAACACGGCCCTTCAGTTCCACCCTGATGTTGTCCCTCCCTCTGCAAAAGAGGAGTCTACAAGACGATTCATCGAGCTTCAAAAGGCATATGAAACCCTTTCAGACCCGGTTTCGCGTCAAATATACGATTACCAGTTGGGTTTGGGGAGCTCATCGGTAGGGTTGGGAGTGGAGGGATTATGTATGGATCAGGTGAAGAGATCCATGTTCAGCAAGGAGGTGTGGGAAGAACAACTTCGGAGATTGCATAATAAGTCTCAAACTCGATCGGGGAGGAAAAGCTATAGGCCGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006109 GO:0006457 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0009987 GO:0010322 GO:0010565 GO:0010675 GO:0019216 GO:0019220 GO:0019222 GO:0019747 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046890 GO:0050789 GO:0050790 GO:0050794 GO:0051174 GO:0051338 GO:0061077 GO:0062012 GO:0065007 GO:0065009 GO:0071071 GO:0080090 GO:1902395 GO:1903725

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

168

Amino Acids

19.1

Weight (kDa)

9.61

Isoelectric Point (pI)

65.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	44 - 112	4.1e-17	DnaJ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0017228)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21470
malus_domestica	MD00G1041000.v1.1
prunus_persica	Prupe.6G180400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0115291
rosa_laevigata	RLG00000018174
rosa_multiflora	Rmu_sc0006112.1_g000011
rosa_roxburghii	Rroxscaffold_2G00130830
rosa_rugosa	Rorug02G0195600
rosa_samantha	Rh2AG253900 Rh2BG264100 Rh2CG258500 Rh2DG262000
rosa_wichuraiana	Rw2G019820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	263
AccII	CGCG	1 cut(s)	322
AclWI	GGATC	2 cut(s)	402, 402
AcuI	CTGAAG	1 cut(s)	203
AgsI	TTSAA	2 cut(s)	16, 287
AluBI	AGCT	6 cut(s)	34, 89, 142, 283, 357, 489
AluI	AGCT	6 cut(s)	34, 89, 142, 283, 357, 489
Alw21I	GWGCWC	2 cut(s)	91, 359
Alw26I	GTCTC	1 cut(s)	468
AlwI	GGATC	2 cut(s)	402, 402
AoxI	GGCC	3 cut(s)	123, 213, 494
ApeKI	GCWGC	1 cut(s)	142
ArsI	GACNNNNNNTTYG	2 cut(s)	245, 277
Asp700I	GAANNNNTTC	1 cut(s)	441
AspS9I	GGNCC	1 cut(s)	214
AsuC2I	CCSGG	1 cut(s)	314
AsuHPI	GGTGA	1 cut(s)	412
AsuNHI	GCTAGC	1 cut(s)	34
BanII	GRGCYC	2 cut(s)	91, 359
Bbv12I	GWGCWC	2 cut(s)	91, 359
BbvI	GCAGC	1 cut(s)	129
BccI	CCATC	2 cut(s)	64, 89
BceAI	ACGGC	1 cut(s)	228
BcnI	CCSGG	1 cut(s)	314
BcoDI	GTCTC	1 cut(s)	468
BfaI	CTAG	1 cut(s)	35
BfmI	CTRYAG	2 cut(s)	202, 490
BisI	GCNGC	1 cut(s)	143
BlsI	GCNGC	1 cut(s)	144
Bme1390I	CCNGG	1 cut(s)	314
BmgT120I	GGNCC	1 cut(s)	214
BmiI	GGNNCC	1 cut(s)	48
BmrFI	CCNGG	1 cut(s)	314
BmtI	GCTAGC	1 cut(s)	38
Bpu10I	CCTNAGC	1 cut(s)	30
BpuMI	CCSGG	1 cut(s)	314
Bse1I	ACTGG	1 cut(s)	340
BseNI	ACTGG	1 cut(s)	340
BseRI	GAGGAG	1 cut(s)	272
BseXI	GCAGC	1 cut(s)	129
Bsh1236I	CGCG	1 cut(s)	322
Bsh1285I	CGRYCG	1 cut(s)	476
BshFI	GGCC	3 cut(s)	125, 215, 496
BsiEI	CGRYCG	1 cut(s)	476
BsiHKAI	GWGCWC	2 cut(s)	91, 359
BsiSI	CCGG	1 cut(s)	314
BslFI	GGGAC	1 cut(s)	224
BsmAI	GTCTC	1 cut(s)	468
BsmFI	GGGAC	1 cut(s)	224
BsnI	GGCC	3 cut(s)	125, 215, 496
Bsp1286I	GDGCHC	2 cut(s)	91, 359
Bsp143I	GATC	3 cut(s)	394, 407, 473
BspANI	GGCC	3 cut(s)	125, 215, 496
BspFNI	CGCG	1 cut(s)	322
BspHI	TCATGA	1 cut(s)	91
BspLI	GGNNCC	1 cut(s)	48
BspOI	GCTAGC	1 cut(s)	38
BspPI	GGATC	2 cut(s)	402, 402
BsrI	ACTGG	1 cut(s)	340
BssMI	GATC	3 cut(s)	394, 407, 473
Bst6I	CTCTTC	1 cut(s)	398
BstC8I	GCNNGC	3 cut(s)	36, 127, 182
BstDEI	CTNAG	1 cut(s)	30
BstFNI	CGCG	1 cut(s)	322
BstKTI	GATC	3 cut(s)	397, 410, 476
BstMAI	GTCTC	1 cut(s)	468
BstMBI	GATC	3 cut(s)	394, 407, 473
BstMCI	CGRYCG	1 cut(s)	476
BstSCI	CCNGG	1 cut(s)	312
BstSFI	CTRYAG	2 cut(s)	202, 490
BstUI	CGCG	1 cut(s)	322
BstV1I	GCAGC	1 cut(s)	129
BstX2I	RGATCY	1 cut(s)	407
BstYI	RGATCY	1 cut(s)	407
BsuRI	GGCC	3 cut(s)	125, 215, 496
Cac8I	GCNNGC	3 cut(s)	36, 127, 182
CciI	TCATGA	1 cut(s)	91
Cfr13I	GGNCC	1 cut(s)	214
CseI	GACGC	1 cut(s)	311
CviAII	CATG	5 cut(s)	81, 92, 106, 185, 412
DdeI	CTNAG	1 cut(s)	30
DpnI	GATC	3 cut(s)	396, 409, 475
DpnII	GATC	3 cut(s)	394, 407, 473
Eam1104I	CTCTTC	1 cut(s)	398
EarI	CTCTTC	1 cut(s)	398
Ecl136II	GAGCTC	2 cut(s)	89, 357
Eco24I	GRGCYC	2 cut(s)	91, 359
Eco53kI	GAGCTC	2 cut(s)	89, 357
Eco57I	CTGAAG	1 cut(s)	203
EcoICRI	GAGCTC	2 cut(s)	89, 357
EcoT38I	GRGCYC	2 cut(s)	91, 359
FaeI	CATG	5 cut(s)	84, 95, 109, 188, 415
FalI	AAGNNNNNCTT	4 cut(s)	164, 196, 426, 458
FaqI	GGGAC	1 cut(s)	224
FatI	CATG	5 cut(s)	80, 91, 105, 184, 411
FauNDI	CATATG	1 cut(s)	295
FblI	GTMKAC	1 cut(s)	263
Fnu4HI	GCNGC	1 cut(s)	143
FriOI	GRGCYC	2 cut(s)	91, 359
Fsp4HI	GCNGC	1 cut(s)	143
FspBI	CTAG	1 cut(s)	35
GluI	GCNGC	1 cut(s)	143
HaeIII	GGCC	3 cut(s)	125, 215, 496
HapII	CCGG	1 cut(s)	314
HgaI	GACGC	1 cut(s)	311
Hin1II	CATG	5 cut(s)	84, 95, 109, 188, 415
HinfI	GANTC	3 cut(s)	61, 260, 273
HpaII	CCGG	1 cut(s)	314
HphI	GGTGA	1 cut(s)	412
Hpy166II	GTNNAC	1 cut(s)	264
Hpy188I	TCNGA	4 cut(s)	66, 160, 310, 447
Hpy188III	TCNNGA	1 cut(s)	92
Hpy8I	GTNNAC	1 cut(s)	264
HpyAV	CCTTC	2 cut(s)	22, 227
HpyCH4V	TGCA	5 cut(s)	84, 109, 184, 251, 454
HpyF3I	CTNAG	1 cut(s)	30
Hsp92II	CATG	5 cut(s)	84, 95, 109, 188, 415
Kzo9I	GATC	3 cut(s)	394, 407, 473
LmnI	GCTCC	1 cut(s)	354
LpnPI	CCDG	5 cut(s)	139, 243, 327, 353, 383
Lsp1109I	GCAGC	1 cut(s)	129
MaeI	CTAG	1 cut(s)	35
MalI	GATC	3 cut(s)	396, 409, 475
MboI	GATC	3 cut(s)	394, 407, 473
MboII	GAAGA	2 cut(s)	415, 446
MflI	RGATCY	1 cut(s)	407
MhlI	GDGCHC	2 cut(s)	91, 359
MlyI	GAGTC	1 cut(s)	269
MnlI	CCTC	6 cut(s)	250, 252, 256, 373, 418, 474
MroXI	GAANNNNTTC	1 cut(s)	441
MslI	CAYNNNNRTG	1 cut(s)	231
MspI	CCGG	1 cut(s)	314
MspR9I	CCNGG	1 cut(s)	314
MvnI	CGCG	1 cut(s)	322
NciI	CCSGG	1 cut(s)	314
NdeI	CATATG	1 cut(s)	295
NdeII	GATC	3 cut(s)	394, 407, 473
NheI	GCTAGC	1 cut(s)	34
NlaIII	CATG	5 cut(s)	84, 95, 109, 188, 415
NlaIV	GGNNCC	1 cut(s)	48
PagI	TCATGA	1 cut(s)	91
PdmI	GAANNNNTTC	1 cut(s)	441
PfeI	GAWTC	2 cut(s)	61, 273
PkrI	GCNGC	1 cut(s)	144
Ple19I	CGATCG	1 cut(s)	476
PleI	GAGTC	1 cut(s)	268
PpsI	GAGTC	1 cut(s)	268
Psp124BI	GAGCTC	2 cut(s)	91, 359
PspN4I	GGNNCC	1 cut(s)	48
PspPI	GGNCC	1 cut(s)	214
PsuI	RGATCY	1 cut(s)	407
PvuI	CGATCG	1 cut(s)	476
RseI	CAYNNNNRTG	1 cut(s)	231
SacI	GAGCTC	2 cut(s)	91, 359
SatI	GCNGC	1 cut(s)	143
Sau3AI	GATC	3 cut(s)	394, 407, 473
Sau96I	GGNCC	1 cut(s)	214
SchI	GAGTC	1 cut(s)	269
ScrFI	CCNGG	1 cut(s)	314
SduI	GDGCHC	2 cut(s)	91, 359
SetI	ASST	9 cut(s)	36, 91, 144, 177, 285, 359, 402, 429, 491
SfcI	CTRYAG	2 cut(s)	202, 490
SmiMI	CAYNNNNRTG	1 cut(s)	231
SspMI	CTAG	1 cut(s)	35
SstI	GAGCTC	2 cut(s)	91, 359
StyD4I	CCNGG	1 cut(s)	312
TaqI	TCGA	3 cut(s)	59, 279, 472
TfiI	GAWTC	2 cut(s)	61, 273
TseI	GCWGC	1 cut(s)	142
TspDTI	ATGAA	3 cut(s)	69, 265, 312
XmiI	GTMKAC	1 cut(s)	263
XmnI	GAANNNNTTC	1 cut(s)	441
XspI	CTAG	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.