FvH4_1g22200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0015930
Physical Location & Seq
Reverse (-)
14134209 .. 14137526
3318 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g22200.t1

Sequence Viewer

Length: 456 bp
ATGCACAATTTTGGAGATGAACTCACTATAGAAACCTACAGAGTCCCCTGGCTGATATGGATCCAGGTCATAGTGATGGTCCTCCTCCTCCTTCTACTCTACTGCTTCAGCATATTGGTCTTGGATCTCCCAGATGACAACAACACCACCAAGCCTTCTTCTTCGTCCAACTCTCGTTTGTTTTCAAGTCACAACTTCACCTCCACAAATTCTGCAAACCGTTTACAGAACACCCAGGTAGGAGAAAGTATGAAAGGCGAGATAGTACCGAGCACCAGTAGAGTAATGAGAGCAGAGGACATGGTTGAAATGGAGGACTCTGCAACACCCAACATATATCTCCACCCATGCTATTATTTTAGACTTGCGAGGGTTGCATTTCTTAAGTGTCTCGGTTTGGACCCTAGCGGTGAAAATTTATCAACCCCACAGAGAGGGAAGAGAAAAGAAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF5306

Protein Analysis

152

Amino Acids

17.16

Weight (kDa)

5.89

Isoelectric Point (pI)

40.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015930)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G64880
fragaria_vesca FvH4_1g22200
malus_domestica MD01G1019000.v1.1
prunus_persica Prupe.6G173600_v2.0.a1
pyrus_communis pycom01g04880 pycom15g29220
rosa_chinensis RchiOBHm_Chr2g0116341
rosa_laevigata RLG00000018260
rosa_roxburghii Rroxscaffold_2G00127330
rosa_rugosa Rorug02G0205700
rosa_samantha Rh2AG261200 Rh2BG272600 Rh2CG267600 Rh2DG269400
rosa_wichuraiana Rw2G020480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 408
AclWI GGATC 3 cut(s) 55, 68, 132
AcsI RAATTY 2 cut(s) 208, 415
AcuI CTGAAG 1 cut(s) 91
AfaI GTAC 1 cut(s) 267
AfiI CCNNNNNNNGG 1 cut(s) 434
AflII CTTAAG 1 cut(s) 383
AgsI TTSAA 2 cut(s) 186, 308
AjnI CCWGG 3 cut(s) 47, 63, 234
AluBI AGCT 1 cut(s) 453
AluI AGCT 1 cut(s) 453
Alw21I GWGCWC 1 cut(s) 275
Alw26I GTCTC 1 cut(s) 395
AlwI GGATC 3 cut(s) 55, 68, 132
ApoI RAATTY 2 cut(s) 208, 415
AspS9I GGNCC 2 cut(s) 79, 400
AsuHPI GGTGA 2 cut(s) 190, 422
AvaII GGWCC 2 cut(s) 79, 400
BamHI GGATCC 1 cut(s) 60
Bbv12I GWGCWC 1 cut(s) 275
BccI CCATC 1 cut(s) 70
BciT130I CCWGG 3 cut(s) 49, 65, 236
BcoDI GTCTC 1 cut(s) 395
BfaI CTAG 1 cut(s) 405
BfmI CTRYAG 2 cut(s) 27, 37
BfrI CTTAAG 1 cut(s) 383
Bme1390I CCNGG 3 cut(s) 49, 65, 236
Bme18I GGWCC 2 cut(s) 79, 400
BmgT120I GGNCC 2 cut(s) 79, 400
BmiI GGNNCC 2 cut(s) 62, 402
BmrFI CCNGG 3 cut(s) 49, 65, 236
BplI GAGNNNNNCTC 1 cut(s) 38
BsaBI GATNNNNATC 1 cut(s) 59
BsaJI CCNNGG 2 cut(s) 47, 234
BsaXI ACNNNNNCTCC 2 cut(s) 185, 215
Bsc4I CCNNNNNNNGG 1 cut(s) 434
Bse1I ACTGG 1 cut(s) 276
Bse8I GATNNNNATC 1 cut(s) 59
BseBI CCWGG 3 cut(s) 49, 65, 236
BseDI CCNNGG 2 cut(s) 47, 234
BseJI GATNNNNATC 1 cut(s) 59
BseLI CCNNNNNNNGG 1 cut(s) 434
BseNI ACTGG 1 cut(s) 276
BseRI GAGGAG 2 cut(s) 74, 77
BsiHKAI GWGCWC 1 cut(s) 275
BslFI GGGAC 1 cut(s) 29
BslI CCNNNNNNNGG 1 cut(s) 434
BsmAI GTCTC 1 cut(s) 395
BsmFI GGGAC 1 cut(s) 29
Bsp1286I GDGCHC 1 cut(s) 275
Bsp143I GATC 2 cut(s) 60, 124
BspACI CCGC 1 cut(s) 408
BspLI GGNNCC 2 cut(s) 62, 402
BspPI GGATC 3 cut(s) 55, 68, 132
BspTI CTTAAG 1 cut(s) 383
BsrI ACTGG 1 cut(s) 276
BssECI CCNNGG 2 cut(s) 47, 234
BssMI GATC 2 cut(s) 60, 124
Bst2UI CCWGG 3 cut(s) 49, 65, 236
Bst4CI ACNGT 1 cut(s) 221
Bst6I CTCTTC 1 cut(s) 434
BstAFI CTTAAG 1 cut(s) 383
BstKTI GATC 2 cut(s) 63, 127
BstMAI GTCTC 1 cut(s) 395
BstMBI GATC 2 cut(s) 60, 124
BstMWI GCNNNNNNNGC 1 cut(s) 374
BstNI CCWGG 3 cut(s) 49, 65, 236
BstSCI CCNGG 3 cut(s) 47, 63, 234
BstSFI CTRYAG 2 cut(s) 27, 37
BstX2I RGATCY 2 cut(s) 60, 124
BstYI RGATCY 2 cut(s) 60, 124
Cfr13I GGNCC 2 cut(s) 79, 400
Csp6I GTAC 1 cut(s) 266
CviAII CATG 2 cut(s) 301, 348
CviJI RGCY 3 cut(s) 52, 154, 453
CviKI_1 RGCY 3 cut(s) 52, 154, 453
CviQI GTAC 1 cut(s) 266
DpnI GATC 2 cut(s) 62, 126
DpnII GATC 2 cut(s) 60, 124
Eam1104I CTCTTC 1 cut(s) 434
EarI CTCTTC 1 cut(s) 434
Eco47I GGWCC 2 cut(s) 79, 400
Eco57I CTGAAG 1 cut(s) 91
EcoRII CCWGG 3 cut(s) 47, 63, 234
FaeI CATG 2 cut(s) 304, 351
FaiI YATR 9 cut(s) 29, 58, 71, 113, 251, 302, 335, 337, 349
FaqI GGGAC 1 cut(s) 29
FatI CATG 2 cut(s) 300, 347
FspBI CTAG 1 cut(s) 405
Hin1II CATG 2 cut(s) 304, 351
HinfI GANTC 2 cut(s) 42, 317
HphI GGTGA 2 cut(s) 190, 422
Hpy166II GTNNAC 1 cut(s) 224
Hpy8I GTNNAC 1 cut(s) 224
HpyAV CCTTC 2 cut(s) 101, 165
HpyCH4III ACNGT 1 cut(s) 221
HpyCH4V TGCA 4 cut(s) 4, 215, 323, 377
HpyF10VI GCNNNNNNNGC 1 cut(s) 374
Hsp92II CATG 2 cut(s) 304, 351
Kzo9I GATC 2 cut(s) 60, 124
LpnPI CCDG 8 cut(s) 34, 50, 61, 77, 144, 221, 248, 289
MaeI CTAG 1 cut(s) 405
MaeIII GTNAC 1 cut(s) 188
MalI GATC 2 cut(s) 62, 126
MboI GATC 2 cut(s) 60, 124
MboII GAAGA 3 cut(s) 150, 153, 451
MflI RGATCY 2 cut(s) 60, 124
MhlI GDGCHC 1 cut(s) 275
MluCI AATT 3 cut(s) 7, 208, 415
MlyI GAGTC 2 cut(s) 51, 311
MmeI TCCRAC 1 cut(s) 192
MnlI CCTC 8 cut(s) 92, 95, 98, 211, 289, 307, 363, 428
MseI TTAA 1 cut(s) 384
MslI CAYNNNNRTG 1 cut(s) 74
MspCI CTTAAG 1 cut(s) 383
MspR9I CCNGG 3 cut(s) 49, 65, 236
MvaI CCWGG 3 cut(s) 49, 65, 236
MwoI GCNNNNNNNGC 1 cut(s) 374
NdeII GATC 2 cut(s) 60, 124
NlaIII CATG 2 cut(s) 304, 351
NlaIV GGNNCC 2 cut(s) 62, 402
NmuCI GTSAC 1 cut(s) 188
PleI GAGTC 2 cut(s) 50, 311
PpsI GAGTC 2 cut(s) 50, 311
Psp6I CCWGG 3 cut(s) 47, 63, 234
PspGI CCWGG 3 cut(s) 47, 63, 234
PspN4I GGNNCC 2 cut(s) 62, 402
PspPI GGNCC 2 cut(s) 79, 400
PsuI RGATCY 2 cut(s) 60, 124
RsaI GTAC 1 cut(s) 267
RsaNI GTAC 1 cut(s) 266
RseI CAYNNNNRTG 1 cut(s) 74
SaqAI TTAA 1 cut(s) 384
Sau3AI GATC 2 cut(s) 60, 124
Sau96I GGNCC 2 cut(s) 79, 400
SchI GAGTC 2 cut(s) 51, 311
ScrFI CCNGG 3 cut(s) 49, 65, 236
SduI GDGCHC 1 cut(s) 275
SetI ASST 5 cut(s) 38, 69, 203, 240, 455
SfcI CTRYAG 2 cut(s) 27, 37
SinI GGWCC 2 cut(s) 79, 400
SmiMI CAYNNNNRTG 1 cut(s) 74
SmlI CTYRAG 1 cut(s) 383
SmoI CTYRAG 1 cut(s) 383
Sse9I AATT 3 cut(s) 7, 208, 415
SsiI CCGC 1 cut(s) 408
SspMI CTAG 1 cut(s) 405
StyD4I CCNGG 3 cut(s) 47, 63, 234
TaaI ACNGT 1 cut(s) 221
TasI AATT 3 cut(s) 7, 208, 415
Tru1I TTAA 1 cut(s) 384
Tru9I TTAA 1 cut(s) 384
TseFI GTSAC 1 cut(s) 188
Tsp45I GTSAC 1 cut(s) 188
TspDTI ATGAA 2 cut(s) 33, 266
Vha464I CTTAAG 1 cut(s) 383
VpaK11BI GGWCC 2 cut(s) 79, 400
XapI RAATTY 2 cut(s) 208, 415
XspI CTAG 1 cut(s) 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.