pycom01g04880

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0015930
Physical Location & Seq
Reverse (-)
4176467 .. 4179767
3301 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g04880.1

Sequence Viewer

Length: 474 bp
ATGTACAATTTTGGGGATGAATTTACTATAGAAAGCTACAGAATCCCATGGCTGGTATGGATCCAGGTGATGGTGATGGTCTTCCTCCTCATCCTTCTCTACTGCTTCAGCTTATTAGTCATAGATCTCTCCAATGATGACATCACGACCACCACCACCAAACCTTCATCTTCCACCAGTCGCTTAGTTTCCGATGGCACCGCCACCTCCACTACGCTTGTCACCAACGGCCTGCAAAATTCCCAGGTAGGAGAAAGTATAAAAGGGGAGATAGTAACAAGCACAAGTAGAACAATGAGAAGAGAGGAGATAGTAGAAATGGAGGAGGCATCAGCAGCAGCAGCAACCCACATATACTTCCACCCTTGCGACTATTTTAGGCTGGCAAGAATTGCATTTCTCAAATGTCTAGGGTTTGACTCCACCTCTGAGAGTTCTTCAACCCCACAAAGAGGAAAGACAAAAGAAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF5306

Protein Analysis

158

Amino Acids

17.56

Weight (kDa)

4.99

Isoelectric Point (pI)

37.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015930)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G64880
fragaria_vesca FvH4_1g22200
malus_domestica MD01G1019000.v1.1
prunus_persica Prupe.6G173600_v2.0.a1
pyrus_communis pycom01g04880 pycom15g29220
rosa_chinensis RchiOBHm_Chr2g0116341
rosa_laevigata RLG00000018260
rosa_roxburghii Rroxscaffold_2G00127330
rosa_rugosa Rorug02G0205700
rosa_samantha Rh2AG261200 Rh2BG272600 Rh2CG267600 Rh2DG269400
rosa_wichuraiana Rw2G020480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 197
AccB7I CCANNNNNTGG 1 cut(s) 70
AciI CCGC 1 cut(s) 201
AclWI GGATC 2 cut(s) 55, 68
AcsI RAATTY 2 cut(s) 20, 238
AcuI CTGAAG 1 cut(s) 91
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 3 cut(s) 52, 70, 452
AgsI TTSAA 1 cut(s) 441
AjnI CCWGG 2 cut(s) 63, 243
AluBI AGCT 2 cut(s) 36, 111
AluI AGCT 2 cut(s) 36, 111
AlwI GGATC 2 cut(s) 55, 68
AoxI GGCC 1 cut(s) 229
ApeKI GCWGC 3 cut(s) 335, 338, 341
ApoI RAATTY 2 cut(s) 20, 238
AsuHPI GGTGA 3 cut(s) 79, 85, 214
BamHI GGATCC 1 cut(s) 60
BanI GGYRCC 1 cut(s) 197
BbsI GAAGAC 1 cut(s) 73
BbvI GCAGC 3 cut(s) 347, 350, 353
BccI CCATC 3 cut(s) 64, 70, 188
BceAI ACGGC 1 cut(s) 244
BciT130I CCWGG 2 cut(s) 65, 245
BfaI CTAG 1 cut(s) 410
BfmI CTRYAG 2 cut(s) 27, 37
BglII AGATCT 1 cut(s) 124
BisI GCNGC 3 cut(s) 336, 339, 342
BlsI GCNGC 3 cut(s) 337, 340, 343
Bme1390I CCNGG 2 cut(s) 65, 245
BmiI GGNNCC 2 cut(s) 62, 199
BmrFI CCNGG 2 cut(s) 65, 245
BmsI GCATC 1 cut(s) 338
BpiI GAAGAC 1 cut(s) 73
BsaJI CCNNGG 2 cut(s) 47, 243
Bsc4I CCNNNNNNNGG 3 cut(s) 52, 70, 452
Bse1I ACTGG 1 cut(s) 177
BseBI CCWGG 2 cut(s) 65, 245
BseDI CCNNGG 2 cut(s) 47, 243
BseGI GGATG 2 cut(s) 22, 90
BseLI CCNNNNNNNGG 3 cut(s) 52, 70, 452
BseMII CTCAG 1 cut(s) 420
BseNI ACTGG 1 cut(s) 177
BseRI GAGGAG 3 cut(s) 77, 320, 338
BseXI GCAGC 3 cut(s) 347, 350, 353
BshFI GGCC 1 cut(s) 231
BshNI GGYRCC 1 cut(s) 197
BslI CCNNNNNNNGG 3 cut(s) 52, 70, 452
BsnI GGCC 1 cut(s) 231
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 2 cut(s) 60, 124
Bsp19I CCATGG 1 cut(s) 47
BspACI CCGC 1 cut(s) 201
BspANI GGCC 1 cut(s) 231
BspCNI CTCAG 1 cut(s) 421
BspLI GGNNCC 2 cut(s) 62, 199
BspPI GGATC 2 cut(s) 55, 68
BspT107I GGYRCC 1 cut(s) 197
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 1 cut(s) 177
BssECI CCNNGG 2 cut(s) 47, 243
BssMI GATC 2 cut(s) 60, 124
BssT1I CCWWGG 1 cut(s) 47
Bst2UI CCWGG 2 cut(s) 65, 245
Bst6I CTCTTC 1 cut(s) 295
BstAPI GCANNNNNTGC 1 cut(s) 392
BstAUI TGTACA 1 cut(s) 3
BstC8I GCNNGC 2 cut(s) 233, 384
BstDEI CTNAG 2 cut(s) 184, 429
BstDSI CCRYGG 1 cut(s) 47
BstF5I GGATG 2 cut(s) 22, 90
BstKTI GATC 2 cut(s) 63, 127
BstMBI GATC 2 cut(s) 60, 124
BstMWI GCNNNNNNNGC 3 cut(s) 335, 341, 392
BstNI CCWGG 2 cut(s) 65, 245
BstSCI CCNGG 2 cut(s) 63, 243
BstSFI CTRYAG 2 cut(s) 27, 37
BstV1I GCAGC 3 cut(s) 347, 350, 353
BstV2I GAAGAC 1 cut(s) 73
BstX2I RGATCY 2 cut(s) 60, 124
BstYI RGATCY 2 cut(s) 60, 124
BsuRI GGCC 1 cut(s) 231
BtgI CCRYGG 1 cut(s) 47
BtsCI GGATG 2 cut(s) 22, 90
Cac8I GCNNGC 2 cut(s) 233, 384
Csp6I GTAC 1 cut(s) 4
CspCI CAANNNNNGTGG 2 cut(s) 199, 234
CviAII CATG 1 cut(s) 48
CviJI RGCY 5 cut(s) 36, 52, 111, 231, 382
CviKI_1 RGCY 5 cut(s) 36, 52, 111, 231, 382
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 2 cut(s) 184, 429
DpnI GATC 2 cut(s) 62, 126
DpnII GATC 2 cut(s) 60, 124
Eam1104I CTCTTC 1 cut(s) 295
EarI CTCTTC 1 cut(s) 295
Eco130I CCWWGG 1 cut(s) 47
Eco57I CTGAAG 1 cut(s) 91
EcoRII CCWGG 2 cut(s) 63, 243
EcoT14I CCWWGG 1 cut(s) 47
ErhI CCWWGG 1 cut(s) 47
FaeI CATG 1 cut(s) 51
FaiI YATR 7 cut(s) 29, 49, 58, 122, 260, 353, 355
FatI CATG 1 cut(s) 47
Fnu4HI GCNGC 3 cut(s) 336, 339, 342
FokI GGATG 2 cut(s) 29, 77
Fsp4HI GCNGC 3 cut(s) 336, 339, 342
FspBI CTAG 1 cut(s) 410
GluI GCNGC 3 cut(s) 336, 339, 342
HaeIII GGCC 1 cut(s) 231
Hin1II CATG 1 cut(s) 51
HinfI GANTC 2 cut(s) 42, 419
HphI GGTGA 3 cut(s) 79, 85, 214
Hpy188I TCNGA 2 cut(s) 193, 430
Hpy188III TCNNGA 1 cut(s) 145
HpyAV CCTTC 2 cut(s) 104, 174
HpyCH4V TGCA 2 cut(s) 235, 395
HpyF10VI GCNNNNNNNGC 3 cut(s) 335, 341, 392
HpyF3I CTNAG 2 cut(s) 184, 429
Hsp92II CATG 1 cut(s) 51
Kzo9I GATC 2 cut(s) 60, 124
LpnPI CCDG 8 cut(s) 38, 50, 77, 190, 230, 245, 257, 368
Lsp1109I GCAGC 3 cut(s) 347, 350, 353
LweI GCATC 1 cut(s) 338
MaeI CTAG 1 cut(s) 410
MaeIII GTNAC 2 cut(s) 220, 274
MalI GATC 2 cut(s) 62, 126
MboI GATC 2 cut(s) 60, 124
MboII GAAGA 4 cut(s) 73, 162, 312, 429
MflI RGATCY 2 cut(s) 60, 124
MluCI AATT 4 cut(s) 7, 20, 238, 390
MlyI GAGTC 1 cut(s) 413
MnlI CCTC 8 cut(s) 95, 98, 217, 298, 316, 319, 436, 446
MspR9I CCNGG 2 cut(s) 65, 245
MvaI CCWGG 2 cut(s) 65, 245
MwoI GCNNNNNNNGC 3 cut(s) 335, 341, 392
NcoI CCATGG 1 cut(s) 47
NdeII GATC 2 cut(s) 60, 124
NlaIII CATG 1 cut(s) 51
NlaIV GGNNCC 2 cut(s) 62, 199
NmuCI GTSAC 1 cut(s) 220
PfeI GAWTC 1 cut(s) 42
PflMI CCANNNNNTGG 1 cut(s) 70
PkrI GCNGC 3 cut(s) 337, 340, 343
PleI GAGTC 1 cut(s) 413
PpsI GAGTC 1 cut(s) 413
Psp6I CCWGG 2 cut(s) 63, 243
PspGI CCWGG 2 cut(s) 63, 243
PspN4I GGNNCC 2 cut(s) 62, 199
PsuI RGATCY 2 cut(s) 60, 124
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
SatI GCNGC 3 cut(s) 336, 339, 342
Sau3AI GATC 2 cut(s) 60, 124
SchI GAGTC 1 cut(s) 413
ScrFI CCNGG 2 cut(s) 65, 245
SetI ASST 7 cut(s) 38, 69, 113, 166, 209, 249, 428
SfaNI GCATC 1 cut(s) 338
SfcI CTRYAG 2 cut(s) 27, 37
Sse9I AATT 4 cut(s) 7, 20, 238, 390
SsiI CCGC 1 cut(s) 201
SspMI CTAG 1 cut(s) 410
StyD4I CCNGG 2 cut(s) 63, 243
StyI CCWWGG 1 cut(s) 47
TasI AATT 4 cut(s) 7, 20, 238, 390
TatI WGTACW 1 cut(s) 3
TfiI GAWTC 1 cut(s) 42
TseFI GTSAC 1 cut(s) 220
TseI GCWGC 3 cut(s) 335, 338, 341
Tsp45I GTSAC 1 cut(s) 220
TspDTI ATGAA 2 cut(s) 33, 156
Van91I CCANNNNNTGG 1 cut(s) 70
XapI RAATTY 2 cut(s) 20, 238
XcmI CCANNNNNNNNNTGG 1 cut(s) 54
XspI CTAG 1 cut(s) 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.