pycom15g29220

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0015930
Physical Location & Seq
Reverse (-)
25930540 .. 25942577
12038 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g29220.2

Sequence Viewer

Length: 486 bp
ATGTACAATTTTGGGGATGAGTTTACAATGGAAAGCTACAGAATCCCATGGCTGGTATGGATCCAGGTGATGGTGATGGTCCTCCTCATCATCCTTCTCTACTGCTTCAATTTACTAGTCATTGATTTCTCCGATGGTGACATCACCACCACCACCACCACCACCACCACCAAACCTTCATCTTCCGCCAGCCGCATAGTTTCTGATGGCACCGCCACCTCCAACACACTTCTCACCAACCGCCTGCAGAATACCCAGGTAGGAGAAAGTATAAAAGGGGAGATAGTAACAAGCACAAGTAGAATGAAGAGAAGAGAGGAGATAGGAGAAATGGAGGCCTCTGCAGCAGCAGCAGCAACCCACATATATTTCCACCCTTGCTACTATTTCAGGTTGGCAAGACTTGCATTTCTCAAGTGCCTAGGCTTTGATTCTACTTCTGAGTATTCTTCAACCCCAAGAGGAGGAAACAGAAAAGAAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF5306

Protein Analysis

162

Amino Acids

18.07

Weight (kDa)

6.11

Isoelectric Point (pI)

30.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015930)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G64880
fragaria_vesca FvH4_1g22200
malus_domestica MD01G1019000.v1.1
prunus_persica Prupe.6G173600_v2.0.a1
pyrus_communis pycom01g04880 pycom15g29220
rosa_chinensis RchiOBHm_Chr2g0116341
rosa_laevigata RLG00000018260
rosa_roxburghii Rroxscaffold_2G00127330
rosa_rugosa Rorug02G0205700
rosa_samantha Rh2AG261200 Rh2BG272600 Rh2CG267600 Rh2DG269400
rosa_wichuraiana Rw2G020480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 209
AccB7I CCANNNNNTGG 1 cut(s) 70
AciI CCGC 4 cut(s) 186, 193, 213, 241
AclWI GGATC 2 cut(s) 55, 68
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 3 cut(s) 52, 70, 464
AgsI TTSAA 2 cut(s) 109, 453
AhlI ACTAGT 1 cut(s) 115
AjnI CCWGG 2 cut(s) 63, 255
AluBI AGCT 1 cut(s) 36
AluI AGCT 1 cut(s) 36
AlwI GGATC 2 cut(s) 55, 68
AoxI GGCC 1 cut(s) 336
ApeKI GCWGC 4 cut(s) 344, 347, 350, 353
AspA2I CCTAGG 1 cut(s) 421
AspS9I GGNCC 1 cut(s) 79
AsuHPI GGTGA 5 cut(s) 79, 85, 136, 149, 226
AvaII GGWCC 1 cut(s) 79
AvrII CCTAGG 1 cut(s) 421
BamHI GGATCC 1 cut(s) 60
BanI GGYRCC 1 cut(s) 209
BbvI GCAGC 4 cut(s) 356, 359, 362, 365
BccI CCATC 4 cut(s) 64, 70, 128, 200
BciT130I CCWGG 2 cut(s) 65, 257
BcuI ACTAGT 1 cut(s) 115
BfaI CTAG 2 cut(s) 116, 422
BfmI CTRYAG 3 cut(s) 37, 245, 342
BisI GCNGC 5 cut(s) 193, 345, 348, 351, 354
BlnI CCTAGG 1 cut(s) 421
BlsI GCNGC 5 cut(s) 194, 346, 349, 352, 355
Bme1390I CCNGG 2 cut(s) 65, 257
Bme18I GGWCC 1 cut(s) 79
BmgT120I GGNCC 1 cut(s) 79
BmiI GGNNCC 2 cut(s) 62, 211
BmrFI CCNGG 2 cut(s) 65, 257
BpuEI CTTGAG 1 cut(s) 398
BsaJI CCNNGG 3 cut(s) 47, 255, 421
Bsc4I CCNNNNNNNGG 3 cut(s) 52, 70, 464
BseBI CCWGG 2 cut(s) 65, 257
BseDI CCNNGG 3 cut(s) 47, 255, 421
BseGI GGATG 2 cut(s) 22, 90
BseLI CCNNNNNNNGG 3 cut(s) 52, 70, 464
BseMII CTCAG 1 cut(s) 432
BseRI GAGGAG 3 cut(s) 74, 332, 477
BseXI GCAGC 4 cut(s) 356, 359, 362, 365
BshFI GGCC 1 cut(s) 338
BshNI GGYRCC 1 cut(s) 209
BslI CCNNNNNNNGG 3 cut(s) 52, 70, 464
BsnI GGCC 1 cut(s) 338
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 1 cut(s) 60
Bsp19I CCATGG 1 cut(s) 47
BspACI CCGC 4 cut(s) 186, 193, 213, 241
BspANI GGCC 1 cut(s) 338
BspCNI CTCAG 1 cut(s) 433
BspLI GGNNCC 2 cut(s) 62, 211
BspMAI CTGCAG 2 cut(s) 249, 346
BspPI GGATC 2 cut(s) 55, 68
BspT107I GGYRCC 1 cut(s) 209
BsrGI TGTACA 1 cut(s) 3
BssECI CCNNGG 3 cut(s) 47, 255, 421
BssMI GATC 1 cut(s) 60
BssT1I CCWWGG 2 cut(s) 47, 421
Bst2UI CCWGG 2 cut(s) 65, 257
Bst6I CTCTTC 2 cut(s) 302, 307
BstAPI GCANNNNNTGC 1 cut(s) 404
BstAUI TGTACA 1 cut(s) 3
BstC8I GCNNGC 2 cut(s) 190, 245
BstDEI CTNAG 1 cut(s) 441
BstDSI CCRYGG 1 cut(s) 47
BstF5I GGATG 2 cut(s) 22, 90
BstKTI GATC 1 cut(s) 63
BstMBI GATC 1 cut(s) 60
BstMWI GCNNNNNNNGC 4 cut(s) 344, 350, 353, 404
BstNI CCWGG 2 cut(s) 65, 257
BstSCI CCNGG 2 cut(s) 63, 255
BstSFI CTRYAG 3 cut(s) 37, 245, 342
BstV1I GCAGC 4 cut(s) 356, 359, 362, 365
BstX2I RGATCY 1 cut(s) 60
BstYI RGATCY 1 cut(s) 60
BsuRI GGCC 1 cut(s) 338
BtgI CCRYGG 1 cut(s) 47
BtsCI GGATG 2 cut(s) 22, 90
Cac8I GCNNGC 2 cut(s) 190, 245
Cfr13I GGNCC 1 cut(s) 79
Csp6I GTAC 1 cut(s) 4
CviAII CATG 1 cut(s) 48
CviJI RGCY 5 cut(s) 36, 52, 192, 338, 426
CviKI_1 RGCY 5 cut(s) 36, 52, 192, 338, 426
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 1 cut(s) 441
DpnI GATC 1 cut(s) 62
DpnII GATC 1 cut(s) 60
Eam1104I CTCTTC 2 cut(s) 302, 307
EarI CTCTTC 2 cut(s) 302, 307
EciI GGCGGA 1 cut(s) 175
Eco130I CCWWGG 2 cut(s) 47, 421
Eco147I AGGCCT 1 cut(s) 338
Eco47I GGWCC 1 cut(s) 79
EcoRII CCWGG 2 cut(s) 63, 255
EcoT14I CCWWGG 2 cut(s) 47, 421
ErhI CCWWGG 2 cut(s) 47, 421
FaeI CATG 1 cut(s) 51
FaiI YATR 6 cut(s) 49, 58, 197, 272, 365, 367
FatI CATG 1 cut(s) 47
Fnu4HI GCNGC 5 cut(s) 193, 345, 348, 351, 354
FokI GGATG 2 cut(s) 29, 77
Fsp4HI GCNGC 5 cut(s) 193, 345, 348, 351, 354
FspBI CTAG 2 cut(s) 116, 422
GluI GCNGC 5 cut(s) 193, 345, 348, 351, 354
HaeIII GGCC 1 cut(s) 338
Hin1II CATG 1 cut(s) 51
HinfI GANTC 2 cut(s) 42, 431
HphI GGTGA 5 cut(s) 79, 85, 136, 149, 226
Hpy166II GTNNAC 1 cut(s) 24
Hpy188I TCNGA 3 cut(s) 133, 205, 442
Hpy8I GTNNAC 1 cut(s) 24
HpyAV CCTTC 2 cut(s) 104, 186
HpyCH4V TGCA 3 cut(s) 247, 344, 407
HpyF10VI GCNNNNNNNGC 4 cut(s) 344, 350, 353, 404
HpyF3I CTNAG 1 cut(s) 441
Hsp92II CATG 1 cut(s) 51
Kzo9I GATC 1 cut(s) 60
LpnPI CCDG 8 cut(s) 38, 50, 77, 202, 242, 257, 269, 376
Lsp1109I GCAGC 4 cut(s) 356, 359, 362, 365
MaeI CTAG 2 cut(s) 116, 422
MaeIII GTNAC 2 cut(s) 137, 286
MalI GATC 1 cut(s) 62
MboI GATC 1 cut(s) 60
MboII GAAGA 4 cut(s) 174, 319, 324, 441
MflI RGATCY 1 cut(s) 60
MluCI AATT 2 cut(s) 7, 109
MmeI TCCRAC 1 cut(s) 246
MnlI CCTC 8 cut(s) 92, 95, 229, 310, 328, 349, 455, 458
MspR9I CCNGG 2 cut(s) 65, 257
MvaI CCWGG 2 cut(s) 65, 257
MwoI GCNNNNNNNGC 4 cut(s) 344, 350, 353, 404
NcoI CCATGG 1 cut(s) 47
NdeII GATC 1 cut(s) 60
NlaIII CATG 1 cut(s) 51
NlaIV GGNNCC 2 cut(s) 62, 211
NmuCI GTSAC 1 cut(s) 137
PceI AGGCCT 1 cut(s) 338
PfeI GAWTC 2 cut(s) 42, 431
PflMI CCANNNNNTGG 1 cut(s) 70
PkrI GCNGC 5 cut(s) 194, 346, 349, 352, 355
Psp6I CCWGG 2 cut(s) 63, 255
PspGI CCWGG 2 cut(s) 63, 255
PspN4I GGNNCC 2 cut(s) 62, 211
PspPI GGNCC 1 cut(s) 79
PstI CTGCAG 2 cut(s) 249, 346
PsuI RGATCY 1 cut(s) 60
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
SatI GCNGC 5 cut(s) 193, 345, 348, 351, 354
Sau3AI GATC 1 cut(s) 60
Sau96I GGNCC 1 cut(s) 79
ScrFI CCNGG 2 cut(s) 65, 257
SetI ASST 6 cut(s) 38, 69, 178, 221, 261, 395
SfcI CTRYAG 3 cut(s) 37, 245, 342
SinI GGWCC 1 cut(s) 79
SmlI CTYRAG 1 cut(s) 413
SmoI CTYRAG 1 cut(s) 413
SpeI ACTAGT 1 cut(s) 115
Sse9I AATT 2 cut(s) 7, 109
SseBI AGGCCT 1 cut(s) 338
SsiI CCGC 4 cut(s) 186, 193, 213, 241
SspMI CTAG 2 cut(s) 116, 422
StuI AGGCCT 1 cut(s) 338
StyD4I CCNGG 2 cut(s) 63, 255
StyI CCWWGG 2 cut(s) 47, 421
TasI AATT 2 cut(s) 7, 109
TatI WGTACW 1 cut(s) 3
TauI GCSGC 1 cut(s) 195
TfiI GAWTC 2 cut(s) 42, 431
TseFI GTSAC 1 cut(s) 137
TseI GCWGC 4 cut(s) 344, 347, 350, 353
Tsp45I GTSAC 1 cut(s) 137
TspDTI ATGAA 2 cut(s) 168, 320
Van91I CCANNNNNTGG 1 cut(s) 70
VpaK11BI GGWCC 1 cut(s) 79
XcmI CCANNNNNNNNNTGG 1 cut(s) 54
XmaJI CCTAGG 1 cut(s) 421
XspI CTAG 2 cut(s) 116, 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.