Rh2DG269400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0015930
Physical Location & Seq
Reverse (-)
29385504 .. 29388747
3244 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG269400.1

Sequence Viewer

Length: 447 bp
ATGTACAATTTTGGAGATGAACTCACTTTAGAAACCTACAGGGTCCCCTGGCTTATATGGATTCAGGTGATAGTGATGGTCCTCCTCCTCCTCCTACTCTACTGCTTCAGCATGTTAGTCTTGGATCTCCCAGATGACAACACCAAGCCTTCGTCTTCCAGCACTCGTTTGGTTTCCAGTCACAACTTCACCACCACAGTTTCTACAAACCGTTTGCAGAGTACCCAGGTAGGAGAAAGTATGAAAGGCGAGATAGTACCGAGCACCAGTAGAGTAATGAGAGCAGAGGACATGGTCGAAATGGAGGGCTCTGCAACACCCATCATATATCTCCACCCATGCTATTATTTTAGACTTGCGAGGCTTGCATTTCTCAAGTGTCTGGGTTTGGATCCTAGTGGTGAAACTTTATCAACCCCGCAGAGAGGGAAGAGAAAAGAAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF5306

Protein Analysis

148

Amino Acids

16.79

Weight (kDa)

6.1

Isoelectric Point (pI)

30.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015930)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G64880
fragaria_vesca FvH4_1g22200
malus_domestica MD01G1019000.v1.1
prunus_persica Prupe.6G173600_v2.0.a1
pyrus_communis pycom01g04880 pycom15g29220
rosa_chinensis RchiOBHm_Chr2g0116341
rosa_laevigata RLG00000018260
rosa_roxburghii Rroxscaffold_2G00127330
rosa_rugosa Rorug02G0205700
rosa_samantha Rh2AG261200 Rh2BG272600 Rh2CG267600 Rh2DG269400
rosa_wichuraiana Rw2G020480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 419
AclWI GGATC 3 cut(s) 132, 386, 399
AcuI CTGAAG 1 cut(s) 91
AfaI GTAC 3 cut(s) 5, 223, 258
AfiI CCNNNNNNNGG 1 cut(s) 425
AjnI CCWGG 2 cut(s) 47, 225
AluBI AGCT 1 cut(s) 444
AluI AGCT 1 cut(s) 444
Alw21I GWGCWC 1 cut(s) 266
AlwI GGATC 3 cut(s) 132, 386, 399
AspS9I GGNCC 2 cut(s) 43, 79
AsuHPI GGTGA 3 cut(s) 79, 181, 413
AvaII GGWCC 2 cut(s) 43, 79
BamHI GGATCC 1 cut(s) 391
BanII GRGCYC 1 cut(s) 311
BbsI GAAGAC 1 cut(s) 147
Bbv12I GWGCWC 1 cut(s) 266
BccI CCATC 2 cut(s) 70, 329
BciT130I CCWGG 2 cut(s) 49, 227
BfaI CTAG 1 cut(s) 396
BfmI CTRYAG 1 cut(s) 37
Bme1390I CCNGG 2 cut(s) 49, 227
Bme18I GGWCC 2 cut(s) 43, 79
BmgT120I GGNCC 2 cut(s) 43, 79
BmiI GGNNCC 3 cut(s) 44, 45, 393
BmrFI CCNGG 2 cut(s) 49, 227
BpiI GAAGAC 1 cut(s) 147
BplI GAGNNNNNCTC 1 cut(s) 38
BpuEI CTTGAG 1 cut(s) 359
BsaJI CCNNGG 2 cut(s) 47, 225
Bsc4I CCNNNNNNNGG 1 cut(s) 425
Bse1I ACTGG 2 cut(s) 177, 267
BseBI CCWGG 2 cut(s) 49, 227
BseDI CCNNGG 2 cut(s) 47, 225
BseLI CCNNNNNNNGG 1 cut(s) 425
BseNI ACTGG 2 cut(s) 177, 267
BseRI GAGGAG 3 cut(s) 74, 77, 80
BsiHKAI GWGCWC 1 cut(s) 266
BslFI GGGAC 1 cut(s) 29
BslI CCNNNNNNNGG 1 cut(s) 425
BsmFI GGGAC 1 cut(s) 29
Bsp1286I GDGCHC 2 cut(s) 266, 311
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 2 cut(s) 124, 391
BspACI CCGC 1 cut(s) 419
BspLI GGNNCC 3 cut(s) 44, 45, 393
BspPI GGATC 3 cut(s) 132, 386, 399
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 2 cut(s) 177, 267
BssECI CCNNGG 2 cut(s) 47, 225
BssMI GATC 2 cut(s) 124, 391
Bst2UI CCWGG 2 cut(s) 49, 227
Bst4CI ACNGT 2 cut(s) 199, 212
Bst6I CTCTTC 1 cut(s) 425
BstAUI TGTACA 1 cut(s) 3
BstC8I GCNNGC 1 cut(s) 366
BstKTI GATC 2 cut(s) 127, 394
BstMBI GATC 2 cut(s) 124, 391
BstMWI GCNNNNNNNGC 1 cut(s) 365
BstNI CCWGG 2 cut(s) 49, 227
BstNSI RCATGY 1 cut(s) 115
BstSCI CCNGG 2 cut(s) 47, 225
BstSFI CTRYAG 1 cut(s) 37
BstV2I GAAGAC 1 cut(s) 147
BstX2I RGATCY 2 cut(s) 124, 391
BstYI RGATCY 2 cut(s) 124, 391
Cac8I GCNNGC 1 cut(s) 366
Cfr13I GGNCC 2 cut(s) 43, 79
Csp6I GTAC 3 cut(s) 4, 222, 257
CviAII CATG 3 cut(s) 112, 292, 339
CviJI RGCY 5 cut(s) 52, 148, 309, 364, 444
CviKI_1 RGCY 5 cut(s) 52, 148, 309, 364, 444
CviQI GTAC 3 cut(s) 4, 222, 257
DpnI GATC 2 cut(s) 126, 393
DpnII GATC 2 cut(s) 124, 391
Eam1104I CTCTTC 1 cut(s) 425
EarI CTCTTC 1 cut(s) 425
Eco24I GRGCYC 1 cut(s) 311
Eco47I GGWCC 2 cut(s) 43, 79
Eco57I CTGAAG 1 cut(s) 91
EcoO109I RGGNCCY 1 cut(s) 43
EcoRII CCWGG 2 cut(s) 47, 225
EcoT38I GRGCYC 1 cut(s) 311
FaeI CATG 3 cut(s) 115, 295, 342
FaiI YATR 8 cut(s) 56, 58, 113, 242, 293, 326, 328, 340
FaqI GGGAC 1 cut(s) 29
FatI CATG 3 cut(s) 111, 291, 338
FauI CCCGC 1 cut(s) 426
FriOI GRGCYC 1 cut(s) 311
FspBI CTAG 1 cut(s) 396
Hin1II CATG 3 cut(s) 115, 295, 342
HinfI GANTC 1 cut(s) 61
HphI GGTGA 3 cut(s) 79, 181, 413
HpyAV CCTTC 1 cut(s) 159
HpyCH4III ACNGT 2 cut(s) 199, 212
HpyCH4V TGCA 3 cut(s) 217, 314, 368
HpyF10VI GCNNNNNNNGC 1 cut(s) 365
Hsp92II CATG 3 cut(s) 115, 295, 342
KflI GGGWCCC 1 cut(s) 43
Kzo9I GATC 2 cut(s) 124, 391
MaeI CTAG 1 cut(s) 396
MaeIII GTNAC 1 cut(s) 179
MalI GATC 2 cut(s) 126, 393
MboI GATC 2 cut(s) 124, 391
MboII GAAGA 2 cut(s) 147, 442
MflI RGATCY 2 cut(s) 124, 391
MhlI GDGCHC 2 cut(s) 266, 311
MluCI AATT 1 cut(s) 7
MnlI CCTC 8 cut(s) 92, 95, 98, 101, 280, 298, 354, 419
MspR9I CCNGG 2 cut(s) 49, 227
MvaI CCWGG 2 cut(s) 49, 227
MwoI GCNNNNNNNGC 1 cut(s) 365
NdeII GATC 2 cut(s) 124, 391
NlaIII CATG 3 cut(s) 115, 295, 342
NlaIV GGNNCC 3 cut(s) 44, 45, 393
NmuCI GTSAC 1 cut(s) 179
NspI RCATGY 1 cut(s) 115
PfeI GAWTC 1 cut(s) 61
PflFI GACNNNGTC 1 cut(s) 293
PpuMI RGGWCCY 1 cut(s) 43
Psp5II RGGWCCY 1 cut(s) 43
Psp6I CCWGG 2 cut(s) 47, 225
PspGI CCWGG 2 cut(s) 47, 225
PspN4I GGNNCC 3 cut(s) 44, 45, 393
PspPI GGNCC 2 cut(s) 43, 79
PspPPI RGGWCCY 1 cut(s) 43
PsuI RGATCY 2 cut(s) 124, 391
PsyI GACNNNGTC 1 cut(s) 293
RsaI GTAC 3 cut(s) 5, 223, 258
RsaNI GTAC 3 cut(s) 4, 222, 257
Sau3AI GATC 2 cut(s) 124, 391
Sau96I GGNCC 2 cut(s) 43, 79
ScrFI CCNGG 2 cut(s) 49, 227
SduI GDGCHC 2 cut(s) 266, 311
SetI ASST 4 cut(s) 38, 69, 231, 446
SfcI CTRYAG 1 cut(s) 37
SinI GGWCC 2 cut(s) 43, 79
SmlI CTYRAG 1 cut(s) 374
SmoI CTYRAG 1 cut(s) 374
Sse9I AATT 1 cut(s) 7
SsiI CCGC 1 cut(s) 419
SspMI CTAG 1 cut(s) 396
StyD4I CCNGG 2 cut(s) 47, 225
TaaI ACNGT 2 cut(s) 199, 212
TaqI TCGA 1 cut(s) 297
TasI AATT 1 cut(s) 7
TatI WGTACW 1 cut(s) 3
TfiI GAWTC 1 cut(s) 61
TseFI GTSAC 1 cut(s) 179
Tsp45I GTSAC 1 cut(s) 179
TspDTI ATGAA 2 cut(s) 33, 257
Tth111I GACNNNGTC 1 cut(s) 293
VpaK11BI GGWCC 2 cut(s) 43, 79
XceI RCATGY 1 cut(s) 115
XcmI CCANNNNNNNNNTGG 1 cut(s) 166
XspI CTAG 1 cut(s) 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.