Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0015930

Physical Location & Seq

Genomic Coordinates Forward (+)

17856888 .. 17859424

Gene Structure 2537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G173600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGCACAATTTTGGGGATGAATTCACAATAGAAAGCTACAGAATCCCATGGCTTGTATGGATCCAGGTGATGGTGATGATCCTCCTCCTCATTCTTCTCTTCTGCTTCAGCATCTTAGTCTTAGATCTCGATGACCACAGCAACACCACCACCACCAGCAACAACAAGCCTTCATCTTCTTCCACTAGCCGCTTAGTTGCTGATGATTTTCCCAAGCACAACACCTCAACCACAGCTTTTACACACCGCTTACAAAATACCCAGGTAGAAGAAAGCATAAAAGGGGAGATAGTAGCAAGCACAACAAGTAGAATAATGAGAGGAGAGGACTTGTTAGAAATGGAGGCCCCTACAGCATTCCATCTATATTTCCACCCTTGCTATTATTTTAGGCTGGCCAGACTTGCATTTCTTAAATGTCTGGGCTTGGACTTTGCCTCTGAGAGTTCTTCAACCCCACAAAGAGGAAAAAGAAGAGAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF5306

Protein Analysis

162

Amino Acids

18.44

Weight (kDa)

6.05

Isoelectric Point (pI)

45.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015930)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64880
fragaria_vesca	FvH4_1g22200
malus_domestica	MD01G1019000.v1.1
prunus_persica	Prupe.6G173600_v2.0.a1
pyrus_communis	pycom01g04880 pycom15g29220
rosa_chinensis	RchiOBHm_Chr2g0116341
rosa_laevigata	RLG00000018260
rosa_roxburghii	Rroxscaffold_2G00127330
rosa_rugosa	Rorug02G0205700
rosa_samantha	Rh2AG261200 Rh2BG272600 Rh2CG267600 Rh2DG269400
rosa_wichuraiana	Rw2G020480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	70
AciI	CCGC	2 cut(s)	190, 247
AclWI	GGATC	3 cut(s)	55, 68, 73
AcoI	YGGCCR	1 cut(s)	396
AcsI	RAATTY	1 cut(s)	20
AcuI	CTGAAG	1 cut(s)	91
AfiI	CCNNNNNNNGG	2 cut(s)	70, 464
AgsI	TTSAA	1 cut(s)	453
AjnI	CCWGG	2 cut(s)	63, 261
AluBI	AGCT	2 cut(s)	36, 236
AluI	AGCT	2 cut(s)	36, 236
AlwI	GGATC	3 cut(s)	55, 68, 73
AoxI	GGCC	2 cut(s)	345, 396
ApoI	RAATTY	1 cut(s)	20
AspS9I	GGNCC	1 cut(s)	346
AsuHPI	GGTGA	2 cut(s)	79, 85
BalI	TGGCCA	1 cut(s)	398
BamHI	GGATCC	1 cut(s)	60
BccI	CCATC	2 cut(s)	64, 369
BciT130I	CCWGG	2 cut(s)	65, 263
BfaI	CTAG	1 cut(s)	186
BfmI	CTRYAG	2 cut(s)	37, 351
BglII	AGATCT	1 cut(s)	124
BisI	GCNGC	1 cut(s)	190
BlsI	GCNGC	1 cut(s)	191
Bme1390I	CCNGG	2 cut(s)	65, 263
BmgT120I	GGNCC	1 cut(s)	346
BmiI	GGNNCC	2 cut(s)	62, 348
BmrFI	CCNGG	2 cut(s)	65, 263
BmsI	GCATC	1 cut(s)	120
BsaJI	CCNNGG	2 cut(s)	47, 261
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 464
BseBI	CCWGG	2 cut(s)	65, 263
BseDI	CCNNGG	2 cut(s)	47, 261
BseGI	GGATG	1 cut(s)	22
BseLI	CCNNNNNNNGG	2 cut(s)	70, 464
BseMII	CTCAG	1 cut(s)	432
BseRI	GAGGAG	3 cut(s)	74, 77, 336
BshFI	GGCC	2 cut(s)	347, 398
BslI	CCNNNNNNNGG	2 cut(s)	70, 464
BsmI	GAATGC	1 cut(s)	356
BsnI	GGCC	2 cut(s)	347, 398
Bsp143I	GATC	3 cut(s)	60, 78, 124
Bsp19I	CCATGG	1 cut(s)	47
BspACI	CCGC	2 cut(s)	190, 247
BspANI	GGCC	2 cut(s)	347, 398
BspCNI	CTCAG	1 cut(s)	433
BspLI	GGNNCC	2 cut(s)	62, 348
BspPI	GGATC	3 cut(s)	55, 68, 73
BssECI	CCNNGG	2 cut(s)	47, 261
BssMI	GATC	3 cut(s)	60, 78, 124
BssT1I	CCWWGG	1 cut(s)	47
Bst2UI	CCWGG	2 cut(s)	65, 263
Bst6I	CTCTTC	2 cut(s)	104, 469
BstC8I	GCNNGC	2 cut(s)	298, 396
BstDEI	CTNAG	4 cut(s)	115, 121, 193, 441
BstDSI	CCRYGG	1 cut(s)	47
BstF5I	GGATG	1 cut(s)	22
BstKTI	GATC	3 cut(s)	63, 81, 127
BstMBI	GATC	3 cut(s)	60, 78, 124
BstMWI	GCNNNNNNNGC	2 cut(s)	353, 404
BstNI	CCWGG	2 cut(s)	65, 263
BstSCI	CCNGG	2 cut(s)	63, 261
BstSFI	CTRYAG	2 cut(s)	37, 351
BstX2I	RGATCY	2 cut(s)	60, 124
BstYI	RGATCY	2 cut(s)	60, 124
BsuRI	GGCC	2 cut(s)	347, 398
BtgI	CCRYGG	1 cut(s)	47
BtsCI	GGATG	1 cut(s)	22
Cac8I	GCNNGC	2 cut(s)	298, 396
Cfr13I	GGNCC	1 cut(s)	346
CviAII	CATG	1 cut(s)	48
CviJI	RGCY	9 cut(s)	36, 52, 169, 189, 236, 347, 394, 398, 426
CviKI_1	RGCY	9 cut(s)	36, 52, 169, 189, 236, 347, 394, 398, 426
DdeI	CTNAG	4 cut(s)	115, 121, 193, 441
DpnI	GATC	3 cut(s)	62, 80, 126
DpnII	GATC	3 cut(s)	60, 78, 124
EaeI	YGGCCR	1 cut(s)	396
Eam1104I	CTCTTC	2 cut(s)	104, 469
EarI	CTCTTC	2 cut(s)	104, 469
Eco130I	CCWWGG	1 cut(s)	47
Eco57I	CTGAAG	1 cut(s)	91
EcoO109I	RGGNCCY	1 cut(s)	346
EcoRI	GAATTC	1 cut(s)	20
EcoRII	CCWGG	2 cut(s)	63, 261
EcoT14I	CCWWGG	1 cut(s)	47
ErhI	CCWWGG	1 cut(s)	47
FaeI	CATG	1 cut(s)	51
FaiI	YATR	4 cut(s)	49, 58, 278, 367
FatI	CATG	1 cut(s)	47
Fnu4HI	GCNGC	1 cut(s)	190
FokI	GGATG	1 cut(s)	29
Fsp4HI	GCNGC	1 cut(s)	190
FspBI	CTAG	1 cut(s)	186
GluI	GCNGC	1 cut(s)	190
HaeIII	GGCC	2 cut(s)	347, 398
Hin1II	CATG	1 cut(s)	51
HinfI	GANTC	1 cut(s)	42
HphI	GGTGA	2 cut(s)	79, 85
Hpy188I	TCNGA	1 cut(s)	442
Hpy188III	TCNNGA	1 cut(s)	128
HpyAV	CCTTC	1 cut(s)	180
HpyCH4V	TGCA	2 cut(s)	4, 407
HpyF10VI	GCNNNNNNNGC	2 cut(s)	353, 404
HpyF3I	CTNAG	4 cut(s)	115, 121, 193, 441
Hsp92II	CATG	1 cut(s)	51
Kzo9I	GATC	3 cut(s)	60, 78, 124
LpnPI	CCDG	8 cut(s)	50, 77, 169, 248, 275, 380, 407, 412
LweI	GCATC	1 cut(s)	120
MaeI	CTAG	1 cut(s)	186
MalI	GATC	3 cut(s)	62, 80, 126
MboI	GATC	3 cut(s)	60, 78, 124
MboII	GAAGA	7 cut(s)	86, 91, 168, 171, 281, 441, 486
MflI	RGATCY	2 cut(s)	60, 124
MlsI	TGGCCA	1 cut(s)	398
MluCI	AATT	2 cut(s)	7, 20
MluNI	TGGCCA	1 cut(s)	398
MnlI	CCTC	9 cut(s)	92, 95, 98, 235, 314, 319, 337, 448, 458
Mox20I	TGGCCA	1 cut(s)	398
MscI	TGGCCA	1 cut(s)	398
MseI	TTAA	1 cut(s)	414
Msp20I	TGGCCA	1 cut(s)	398
MspR9I	CCNGG	2 cut(s)	65, 263
Mva1269I	GAATGC	1 cut(s)	356
MvaI	CCWGG	2 cut(s)	65, 263
MwoI	GCNNNNNNNGC	2 cut(s)	353, 404
NcoI	CCATGG	1 cut(s)	47
NdeII	GATC	3 cut(s)	60, 78, 124
NlaIII	CATG	1 cut(s)	51
NlaIV	GGNNCC	2 cut(s)	62, 348
PctI	GAATGC	1 cut(s)	356
PfeI	GAWTC	1 cut(s)	42
PflMI	CCANNNNNTGG	1 cut(s)	70
PkrI	GCNGC	1 cut(s)	191
Psp6I	CCWGG	2 cut(s)	63, 261
PspGI	CCWGG	2 cut(s)	63, 261
PspN4I	GGNNCC	2 cut(s)	62, 348
PspPI	GGNCC	1 cut(s)	346
PsuI	RGATCY	2 cut(s)	60, 124
SaqAI	TTAA	1 cut(s)	414
SatI	GCNGC	1 cut(s)	190
Sau3AI	GATC	3 cut(s)	60, 78, 124
Sau96I	GGNCC	1 cut(s)	346
ScrFI	CCNGG	2 cut(s)	65, 263
SetI	ASST	5 cut(s)	38, 69, 227, 238, 267
SfaNI	GCATC	1 cut(s)	120
SfcI	CTRYAG	2 cut(s)	37, 351
Sse9I	AATT	2 cut(s)	7, 20
SsiI	CCGC	2 cut(s)	190, 247
SspMI	CTAG	1 cut(s)	186
StyD4I	CCNGG	2 cut(s)	63, 261
StyI	CCWWGG	1 cut(s)	47
TaqI	TCGA	1 cut(s)	129
TasI	AATT	2 cut(s)	7, 20
TauI	GCSGC	1 cut(s)	192
TfiI	GAWTC	1 cut(s)	42
Tru1I	TTAA	1 cut(s)	414
Tru9I	TTAA	1 cut(s)	414
TspDTI	ATGAA	2 cut(s)	33, 162
Van91I	CCANNNNNTGG	1 cut(s)	70
XapI	RAATTY	1 cut(s)	20
XcmI	CCANNNNNNNNNTGG	1 cut(s)	54
XspI	CTAG	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.