Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0015930

Physical Location & Seq

Genomic Coordinates Reverse (-)

8052945 .. 8056893

Gene Structure 3949 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1019000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGTGCAATTTTGGGGATGAATTTACAATAGAAAGCTACAGAATCCCATGGCTGGTATGGATCCAGGTGATGGTGATGGTCCTCCTCCTCATCATTCTGTACTGCTTCAGCTTATTGGTCATAGATCTCTCCAATGATGACATCACCACCACCACCACCACCACCAAACCTTCATCTTCCACCAGTCGCTTAGTTTCCGATGGCACCGCCACCTCCACTACGCTTGTCACCAACCGCCTGCAAAATTCCCAGGTAGGAGAAAGTATAAAAGGGGAGATAGTAACAAGCACAAGTAGAACAATGAGAAGAGAGGAGATGGTAGAAATGGAGGAGGCATCAGCAGCAGTAGCAGCCCACATATACTTCCACCCTTGCTACTATTTTAGGCTGGCAAGAATTGCATTTCTCAAATGTTTAGGGTTTGACTGCACCTTTGAGAGTTCTTCAACCCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF5306

Protein Analysis

152

Amino Acids

16.98

Weight (kDa)

4.94

Isoelectric Point (pI)

37.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015930)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64880
fragaria_vesca	FvH4_1g22200
malus_domestica	MD01G1019000.v1.1
prunus_persica	Prupe.6G173600_v2.0.a1
pyrus_communis	pycom01g04880 pycom15g29220
rosa_chinensis	RchiOBHm_Chr2g0116341
rosa_laevigata	RLG00000018260
rosa_roxburghii	Rroxscaffold_2G00127330
rosa_rugosa	Rorug02G0205700
rosa_samantha	Rh2AG261200 Rh2BG272600 Rh2CG267600 Rh2DG269400
rosa_wichuraiana	Rw2G020480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	203
AccB7I	CCANNNNNTGG	1 cut(s)	70
AciI	CCGC	2 cut(s)	207, 235
AclWI	GGATC	2 cut(s)	55, 68
AcsI	RAATTY	2 cut(s)	20, 244
AcuI	CTGAAG	1 cut(s)	91
AfaI	GTAC	1 cut(s)	101
AfiI	CCNNNNNNNGG	2 cut(s)	52, 70
AgsI	TTSAA	1 cut(s)	447
AjnI	CCWGG	2 cut(s)	63, 249
AluBI	AGCT	2 cut(s)	36, 111
AluI	AGCT	2 cut(s)	36, 111
AlwI	GGATC	2 cut(s)	55, 68
ApeKI	GCWGC	2 cut(s)	341, 350
ApoI	RAATTY	2 cut(s)	20, 244
ArsI	GACNNNNNNTTYG	2 cut(s)	416, 448
AspS9I	GGNCC	1 cut(s)	79
AsuHPI	GGTGA	4 cut(s)	79, 85, 136, 220
AvaII	GGWCC	1 cut(s)	79
BamHI	GGATCC	1 cut(s)	60
BanI	GGYRCC	1 cut(s)	203
BbvI	GCAGC	2 cut(s)	353, 362
BccI	CCATC	4 cut(s)	64, 70, 194, 310
BciT130I	CCWGG	2 cut(s)	65, 251
BfmI	CTRYAG	1 cut(s)	37
BglII	AGATCT	1 cut(s)	124
BisI	GCNGC	2 cut(s)	342, 351
BlsI	GCNGC	2 cut(s)	343, 352
Bme1390I	CCNGG	2 cut(s)	65, 251
Bme18I	GGWCC	1 cut(s)	79
BmgT120I	GGNCC	1 cut(s)	79
BmiI	GGNNCC	2 cut(s)	62, 205
BmrFI	CCNGG	2 cut(s)	65, 251
BmsI	GCATC	1 cut(s)	344
BsaJI	CCNNGG	2 cut(s)	47, 249
Bsc4I	CCNNNNNNNGG	2 cut(s)	52, 70
Bse1I	ACTGG	1 cut(s)	183
BseBI	CCWGG	2 cut(s)	65, 251
BseDI	CCNNGG	2 cut(s)	47, 249
BseGI	GGATG	1 cut(s)	22
BseLI	CCNNNNNNNGG	2 cut(s)	52, 70
BseNI	ACTGG	1 cut(s)	183
BseRI	GAGGAG	4 cut(s)	74, 77, 326, 344
BseXI	GCAGC	2 cut(s)	353, 362
BsgI	GTGCAG	1 cut(s)	412
BshNI	GGYRCC	1 cut(s)	203
BslI	CCNNNNNNNGG	2 cut(s)	52, 70
Bsp143I	GATC	2 cut(s)	60, 124
Bsp19I	CCATGG	1 cut(s)	47
BspACI	CCGC	2 cut(s)	207, 235
BspLI	GGNNCC	2 cut(s)	62, 205
BspPI	GGATC	2 cut(s)	55, 68
BspT107I	GGYRCC	1 cut(s)	203
BsrI	ACTGG	1 cut(s)	183
BssECI	CCNNGG	2 cut(s)	47, 249
BssMI	GATC	2 cut(s)	60, 124
BssT1I	CCWWGG	1 cut(s)	47
Bst2UI	CCWGG	2 cut(s)	65, 251
Bst6I	CTCTTC	1 cut(s)	301
BstAPI	GCANNNNNTGC	1 cut(s)	398
BstC8I	GCNNGC	2 cut(s)	239, 390
BstDEI	CTNAG	1 cut(s)	190
BstDSI	CCRYGG	1 cut(s)	47
BstF5I	GGATG	1 cut(s)	22
BstKTI	GATC	2 cut(s)	63, 127
BstMBI	GATC	2 cut(s)	60, 124
BstMWI	GCNNNNNNNGC	4 cut(s)	341, 347, 350, 398
BstNI	CCWGG	2 cut(s)	65, 251
BstSCI	CCNGG	2 cut(s)	63, 249
BstSFI	CTRYAG	1 cut(s)	37
BstV1I	GCAGC	2 cut(s)	353, 362
BstX2I	RGATCY	2 cut(s)	60, 124
BstYI	RGATCY	2 cut(s)	60, 124
BtgI	CCRYGG	1 cut(s)	47
BtsCI	GGATG	1 cut(s)	22
Cac8I	GCNNGC	2 cut(s)	239, 390
Cfr13I	GGNCC	1 cut(s)	79
Csp6I	GTAC	1 cut(s)	100
CspCI	CAANNNNNGTGG	2 cut(s)	205, 240
CviAII	CATG	1 cut(s)	48
CviJI	RGCY	5 cut(s)	36, 52, 111, 353, 388
CviKI_1	RGCY	5 cut(s)	36, 52, 111, 353, 388
CviQI	GTAC	1 cut(s)	100
DdeI	CTNAG	1 cut(s)	190
DpnI	GATC	2 cut(s)	62, 126
DpnII	GATC	2 cut(s)	60, 124
Eam1104I	CTCTTC	1 cut(s)	301
EarI	CTCTTC	1 cut(s)	301
Eco130I	CCWWGG	1 cut(s)	47
Eco47I	GGWCC	1 cut(s)	79
Eco57I	CTGAAG	1 cut(s)	91
EcoRII	CCWGG	2 cut(s)	63, 249
EcoT14I	CCWWGG	1 cut(s)	47
ErhI	CCWWGG	1 cut(s)	47
FaeI	CATG	1 cut(s)	51
FaiI	YATR	7 cut(s)	49, 58, 122, 266, 359, 361, 454
FatI	CATG	1 cut(s)	47
Fnu4HI	GCNGC	2 cut(s)	342, 351
FokI	GGATG	1 cut(s)	29
Fsp4HI	GCNGC	2 cut(s)	342, 351
GluI	GCNGC	2 cut(s)	342, 351
Hin1II	CATG	1 cut(s)	51
HinfI	GANTC	1 cut(s)	42
HphI	GGTGA	4 cut(s)	79, 85, 136, 220
Hpy188I	TCNGA	1 cut(s)	199
HpyAV	CCTTC	1 cut(s)	180
HpyCH4V	TGCA	4 cut(s)	6, 241, 401, 429
HpyF10VI	GCNNNNNNNGC	4 cut(s)	341, 347, 350, 398
HpyF3I	CTNAG	1 cut(s)	190
Hsp92II	CATG	1 cut(s)	51
Kzo9I	GATC	2 cut(s)	60, 124
LpnPI	CCDG	8 cut(s)	38, 50, 77, 196, 236, 251, 263, 374
Lsp1109I	GCAGC	2 cut(s)	353, 362
LweI	GCATC	1 cut(s)	344
MaeIII	GTNAC	2 cut(s)	226, 280
MalI	GATC	2 cut(s)	62, 126
MboI	GATC	2 cut(s)	60, 124
MboII	GAAGA	3 cut(s)	168, 318, 435
MflI	RGATCY	2 cut(s)	60, 124
MluCI	AATT	4 cut(s)	7, 20, 244, 396
MnlI	CCTC	7 cut(s)	92, 95, 98, 223, 304, 322, 325
MspR9I	CCNGG	2 cut(s)	65, 251
MvaI	CCWGG	2 cut(s)	65, 251
MwoI	GCNNNNNNNGC	4 cut(s)	341, 347, 350, 398
NcoI	CCATGG	1 cut(s)	47
NdeII	GATC	2 cut(s)	60, 124
NlaIII	CATG	1 cut(s)	51
NlaIV	GGNNCC	2 cut(s)	62, 205
NmuCI	GTSAC	1 cut(s)	226
PfeI	GAWTC	1 cut(s)	42
PflMI	CCANNNNNTGG	1 cut(s)	70
PkrI	GCNGC	2 cut(s)	343, 352
Psp6I	CCWGG	2 cut(s)	63, 249
PspGI	CCWGG	2 cut(s)	63, 249
PspN4I	GGNNCC	2 cut(s)	62, 205
PspPI	GGNCC	1 cut(s)	79
PsuI	RGATCY	2 cut(s)	60, 124
RsaI	GTAC	1 cut(s)	101
RsaNI	GTAC	1 cut(s)	100
SatI	GCNGC	2 cut(s)	342, 351
Sau3AI	GATC	2 cut(s)	60, 124
Sau96I	GGNCC	1 cut(s)	79
ScrFI	CCNGG	2 cut(s)	65, 251
SetI	ASST	7 cut(s)	38, 69, 113, 172, 215, 255, 434
SfaNI	GCATC	1 cut(s)	344
SfcI	CTRYAG	1 cut(s)	37
SinI	GGWCC	1 cut(s)	79
Sse9I	AATT	4 cut(s)	7, 20, 244, 396
SsiI	CCGC	2 cut(s)	207, 235
StyD4I	CCNGG	2 cut(s)	63, 249
StyI	CCWWGG	1 cut(s)	47
TasI	AATT	4 cut(s)	7, 20, 244, 396
TatI	WGTACW	1 cut(s)	99
TfiI	GAWTC	1 cut(s)	42
TseFI	GTSAC	1 cut(s)	226
TseI	GCWGC	2 cut(s)	341, 350
Tsp45I	GTSAC	1 cut(s)	226
TspDTI	ATGAA	2 cut(s)	33, 162
Van91I	CCANNNNNTGG	1 cut(s)	70
VpaK11BI	GGWCC	1 cut(s)	79
XapI	RAATTY	2 cut(s)	20, 244
XcmI	CCANNNNNNNNNTGG	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.