Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0018784

Physical Location & Seq

Genomic Coordinates Forward (+)

14216336 .. 14218433

Gene Structure 2098 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g22321.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGAGTGTTGAAAAATGTTTATTTGGTAGGGTTACTCATTTTCAAAGGAAGTTATACCAAAATTTTGGTAGAATTTCCCTTGAGGTGGGTCCCGCAGGGTTTATTCCGGATTTCAAGGGGAAATCCGGGGGCTCAGAACCTGAGCTTGGTGAAGAACCACCTGTTCTTCCCGGTCTTGAACCTCTCCCCGAACCTCTTCTTGGTCTCCTTCAAGGCGGAGACCTTCTTGTCCTTGCTGGTGAGCACGTCAGGGGTGACGACCTTCTTCAGATCCACGAGCTTCACGAACAGCTTCATCGTCGACTTCTTTGCCATCTTCTTCGCCGAGTCCTTTTGGATCACCTTGCTGGGGAACTTCTTGATGCCGGCGAGGCGCGGTCGTCGAAGGCCTTGACGATGACGCCCTTACGACCGGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002683 GO:0003674 GO:0003676 GO:0003677 GO:0003680 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031347 GO:0031348 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045088 GO:0045824 GO:0048519 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF296

Protein Analysis

140

Amino Acids

15.29

Weight (kDa)

5.95

Isoelectric Point (pI)

51.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018784)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22321 FvH4_3g30191 FvH4_3g31746 FvH4_3g31746
pyrus_communis	pycom09g05880
rosa_chinensis	RchiOBHm_Chr7g0220901
rosa_multiflora	Rmu_sc0000756.1_g000011
rosa_roxburghii	Rroxscaffold_2G00094810
rosa_samantha	Rh5BG308800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	227
AccI	GTMKAC	1 cut(s)	301
AccII	CGCG	1 cut(s)	376
AccIII	TCCGGA	1 cut(s)	106
AciI	CCGC	3 cut(s)	93, 216, 376
AclWI	GGATC	2 cut(s)	265, 345
AcsI	RAATTY	2 cut(s)	61, 72
AcuI	CTGAAG	1 cut(s)	251
AcyI	GRCGYC	1 cut(s)	401
AfiI	CCNNNNNNNGG	4 cut(s)	85, 146, 200, 349
AgsI	TTSAA	5 cut(s)	11, 44, 115, 179, 212
AjiI	CACGTC	1 cut(s)	247
AjuI	GAANNNNNNNTTGG	4 cut(s)	129, 161, 183, 215
AluBI	AGCT	3 cut(s)	145, 280, 292
AluI	AGCT	3 cut(s)	145, 280, 292
Alw21I	GWGCWC	1 cut(s)	246
Alw26I	GTCTC	2 cut(s)	209, 213
AlwI	GGATC	2 cut(s)	265, 345
AlwNI	CAGNNNCTG	1 cut(s)	140
Aor13HI	TCCGGA	1 cut(s)	106
AoxI	GGCC	1 cut(s)	387
ApoI	RAATTY	2 cut(s)	61, 72
Asp700I	GAANNNNTTC	2 cut(s)	195, 291
AspLEI	GCGC	1 cut(s)	376
AspS9I	GGNCC	1 cut(s)	89
AsuC2I	CCSGG	2 cut(s)	127, 171
AsuHPI	GGTGA	4 cut(s)	161, 251, 266, 332
AvaII	GGWCC	1 cut(s)	89
BanII	GRGCYC	1 cut(s)	134
BauI	CACGAG	1 cut(s)	275
Bbv12I	GWGCWC	1 cut(s)	246
BccI	CCATC	1 cut(s)	321
BcgI	CGANNNNNNTGC	2 cut(s)	291, 325
BcnI	CCSGG	2 cut(s)	127, 171
BcoDI	GTCTC	2 cut(s)	209, 213
BglI	GCCNNNNNGGC	1 cut(s)	371
Bme1390I	CCNGG	2 cut(s)	127, 171
Bme18I	GGWCC	1 cut(s)	89
BmgBI	CACGTC	1 cut(s)	247
BmgT120I	GGNCC	1 cut(s)	89
BmiI	GGNNCC	2 cut(s)	90, 91
BmrFI	CCNGG	2 cut(s)	127, 171
BmsI	GCATC	1 cut(s)	352
Bpu10I	CCTNAGC	1 cut(s)	141
BpuEI	CTTGAG	1 cut(s)	101
BpuMI	CCSGG	2 cut(s)	127, 171
BsaHI	GRCGYC	1 cut(s)	401
BsaI	GGTCTC	2 cut(s)	209, 213
BsaJI	CCNNGG	1 cut(s)	126
BsaWI	WCCGGW	1 cut(s)	106
Bsc4I	CCNNNNNNNGG	4 cut(s)	85, 146, 200, 349
Bse118I	RCCGGY	2 cut(s)	365, 412
BseAI	TCCGGA	1 cut(s)	106
BseDI	CCNNGG	1 cut(s)	126
BseLI	CCNNNNNNNGG	4 cut(s)	85, 146, 200, 349
BseMII	CTCAG	2 cut(s)	132, 147
BseYI	CCCAGC	1 cut(s)	347
Bsh1236I	CGCG	1 cut(s)	376
Bsh1285I	CGRYCG	2 cut(s)	380, 413
BshFI	GGCC	1 cut(s)	389
BsiEI	CGRYCG	2 cut(s)	380, 413
BsiHKAI	GWGCWC	1 cut(s)	246
BsiSI	CCGG	5 cut(s)	107, 126, 171, 366, 413
BslFI	GGGAC	1 cut(s)	75
BslI	CCNNNNNNNGG	4 cut(s)	85, 146, 200, 349
BsmAI	GTCTC	2 cut(s)	209, 213
BsmFI	GGGAC	1 cut(s)	75
BsnI	GGCC	1 cut(s)	389
Bso31I	GGTCTC	2 cut(s)	209, 213
Bsp1286I	GDGCHC	2 cut(s)	134, 246
Bsp13I	TCCGGA	1 cut(s)	106
Bsp143I	GATC	2 cut(s)	270, 337
BspACI	CCGC	3 cut(s)	93, 216, 376
BspANI	GGCC	1 cut(s)	389
BspCNI	CTCAG	2 cut(s)	133, 146
BspEI	TCCGGA	1 cut(s)	106
BspFNI	CGCG	1 cut(s)	376
BspLI	GGNNCC	2 cut(s)	90, 91
BspPI	GGATC	2 cut(s)	265, 345
BspTNI	GGTCTC	2 cut(s)	209, 213
BsrFI	RCCGGY	2 cut(s)	365, 412
BssAI	RCCGGY	2 cut(s)	365, 412
BssECI	CCNNGG	1 cut(s)	126
BssMI	GATC	2 cut(s)	270, 337
BssNI	GRCGYC	1 cut(s)	401
BssSI	CACGAG	1 cut(s)	275
Bst2BI	CACGAG	1 cut(s)	275
Bst6I	CTCTTC	1 cut(s)	201
BstACI	GRCGYC	1 cut(s)	401
BstC8I	GCNNGC	1 cut(s)	367
BstDEI	CTNAG	2 cut(s)	133, 141
BstFNI	CGCG	1 cut(s)	376
BstHHI	GCGC	1 cut(s)	376
BstKTI	GATC	2 cut(s)	273, 340
BstMAI	GTCTC	2 cut(s)	209, 213
BstMBI	GATC	2 cut(s)	270, 337
BstMCI	CGRYCG	2 cut(s)	380, 413
BstMWI	GCNNNNNNNGC	1 cut(s)	371
BstSCI	CCNGG	2 cut(s)	125, 169
BstUI	CGCG	1 cut(s)	376
BstX2I	RGATCY	1 cut(s)	270
BstXI	CCANNNNNNTGG	1 cut(s)	65
BstYI	RGATCY	1 cut(s)	270
BsuRI	GGCC	1 cut(s)	389
BtrI	CACGTC	1 cut(s)	247
Cac8I	GCNNGC	1 cut(s)	367
CaiI	CAGNNNCTG	1 cut(s)	140
CfoI	GCGC	1 cut(s)	376
Cfr10I	RCCGGY	2 cut(s)	365, 412
Cfr13I	GGNCC	1 cut(s)	89
CseI	GACGC	1 cut(s)	409
CviJI	RGCY	5 cut(s)	132, 145, 280, 292, 389
CviKI_1	RGCY	5 cut(s)	132, 145, 280, 292, 389
DdeI	CTNAG	2 cut(s)	133, 141
DpnI	GATC	2 cut(s)	272, 339
DpnII	GATC	2 cut(s)	270, 337
DrdI	GACNNNNNNGTC	1 cut(s)	227
DseDI	GACNNNNNNGTC	1 cut(s)	227
Eam1104I	CTCTTC	1 cut(s)	201
EarI	CTCTTC	1 cut(s)	201
EciI	GGCGGA	1 cut(s)	231
Eco147I	AGGCCT	1 cut(s)	389
Eco24I	GRGCYC	1 cut(s)	134
Eco31I	GGTCTC	2 cut(s)	209, 213
Eco47I	GGWCC	1 cut(s)	89
Eco57I	CTGAAG	1 cut(s)	251
EcoO109I	RGGNCCY	1 cut(s)	89
EcoT38I	GRGCYC	1 cut(s)	134
FaiI	YATR	1 cut(s)	55
FaqI	GGGAC	1 cut(s)	75
FauI	CCCGC	1 cut(s)	100
FblI	GTMKAC	1 cut(s)	301
FriOI	GRGCYC	1 cut(s)	134
GlaI	GCGC	1 cut(s)	375
GsaI	CCCAGC	1 cut(s)	351
HaeIII	GGCC	1 cut(s)	389
HapII	CCGG	5 cut(s)	107, 126, 171, 366, 413
HgaI	GACGC	1 cut(s)	409
HhaI	GCGC	1 cut(s)	376
Hin1I	GRCGYC	1 cut(s)	401
Hin6I	GCGC	1 cut(s)	374
HinP1I	GCGC	1 cut(s)	374
HincII	GTYRAC	1 cut(s)	302
HindII	GTYRAC	1 cut(s)	302
HinfI	GANTC	1 cut(s)	327
HpaII	CCGG	5 cut(s)	107, 126, 171, 366, 413
HphI	GGTGA	4 cut(s)	161, 251, 266, 332
Hpy166II	GTNNAC	1 cut(s)	302
Hpy188I	TCNGA	2 cut(s)	136, 270
Hpy188III	TCNNGA	4 cut(s)	107, 176, 284, 359
Hpy8I	GTNNAC	1 cut(s)	302
Hpy99I	CGWCG	2 cut(s)	303, 385
HpyAV	CCTTC	4 cut(s)	218, 233, 272, 379
HpyCH4IV	ACGT	1 cut(s)	246
HpyF10VI	GCNNNNNNNGC	1 cut(s)	371
HpyF3I	CTNAG	2 cut(s)	133, 141
HpySE526I	ACGT	1 cut(s)	246
Hsp92I	GRCGYC	1 cut(s)	401
HspAI	GCGC	1 cut(s)	374
KflI	GGGWCCC	1 cut(s)	89
Kpn2I	TCCGGA	1 cut(s)	106
KroI	GCCGGC	1 cut(s)	365
KroNI	GCCGGC	1 cut(s)	367
Kzo9I	GATC	2 cut(s)	270, 337
LweI	GCATC	1 cut(s)	352
MaeII	ACGT	1 cut(s)	246
MaeIII	GTNAC	2 cut(s)	31, 254
MalI	GATC	2 cut(s)	272, 339
MboI	GATC	2 cut(s)	270, 337
MboII	GAAGA	6 cut(s)	158, 164, 188, 257, 308, 311
MflI	RGATCY	1 cut(s)	270
MhlI	GDGCHC	2 cut(s)	134, 246
MluCI	AATT	2 cut(s)	61, 72
MlyI	GAGTC	1 cut(s)	336
MnlI	CCTC	4 cut(s)	76, 192, 204, 364
MroI	TCCGGA	1 cut(s)	106
MroNI	GCCGGC	1 cut(s)	365
MroXI	GAANNNNTTC	2 cut(s)	195, 291
MspI	CCGG	5 cut(s)	107, 126, 171, 366, 413
MspR9I	CCNGG	2 cut(s)	127, 171
MvnI	CGCG	1 cut(s)	376
MwoI	GCNNNNNNNGC	1 cut(s)	371
NaeI	GCCGGC	1 cut(s)	367
NciI	CCSGG	2 cut(s)	127, 171
NdeII	GATC	2 cut(s)	270, 337
NgoMIV	GCCGGC	1 cut(s)	365
NlaIV	GGNNCC	2 cut(s)	90, 91
NmeAIII	GCCGAG	1 cut(s)	350
NmuCI	GTSAC	1 cut(s)	254
PceI	AGGCCT	1 cut(s)	389
PcsI	WCGNNNNNNNCGW	1 cut(s)	282
PdiI	GCCGGC	1 cut(s)	367
PdmI	GAANNNNTTC	2 cut(s)	195, 291
PleI	GAGTC	1 cut(s)	335
PpsI	GAGTC	1 cut(s)	335
PpuMI	RGGWCCY	1 cut(s)	89
Psp5II	RGGWCCY	1 cut(s)	89
PspFI	CCCAGC	1 cut(s)	347
PspN4I	GGNNCC	2 cut(s)	90, 91
PspPI	GGNCC	1 cut(s)	89
PspPPI	RGGWCCY	1 cut(s)	89
PstNI	CAGNNNCTG	1 cut(s)	140
PsuI	RGATCY	1 cut(s)	270
SalI	GTCGAC	1 cut(s)	300
Sau3AI	GATC	2 cut(s)	270, 337
Sau96I	GGNCC	1 cut(s)	89
SchI	GAGTC	1 cut(s)	336
ScrFI	CCNGG	2 cut(s)	127, 171
SduI	GDGCHC	2 cut(s)	134, 246
SfaNI	GCATC	1 cut(s)	352
SinI	GGWCC	1 cut(s)	89
SmlI	CTYRAG	1 cut(s)	80
SmoI	CTYRAG	1 cut(s)	80
Sse9I	AATT	2 cut(s)	61, 72
SseBI	AGGCCT	1 cut(s)	389
SsiI	CCGC	3 cut(s)	93, 216, 376
StuI	AGGCCT	1 cut(s)	389
StyD4I	CCNGG	2 cut(s)	125, 169
TaiI	ACGT	1 cut(s)	249
TaqI	TCGA	2 cut(s)	301, 383
TasI	AATT	2 cut(s)	61, 72
TseFI	GTSAC	1 cut(s)	254
Tsp45I	GTSAC	1 cut(s)	254
TspDTI	ATGAA	1 cut(s)	284
VpaK11BI	GGWCC	1 cut(s)	89
XapI	RAATTY	2 cut(s)	61, 72
XmiI	GTMKAC	1 cut(s)	301
XmnI	GAANNNNTTC	2 cut(s)	195, 291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.