Rroxscaffold_2G00094810

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0018784
Physical Location & Seq
Reverse (-)
16188719 .. 16189577
859 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00094810.1

Sequence Viewer

Length: 321 bp
ATGCTGGTAGTTGACGAGCTTGACGAAGGGCTTCACCCTCGACTTCTTGGCGGTCTTCTTGGCCGAGTCCTTGCGGATCACCTTGCTCGGGTACTTCTTGATTCCGGCAACCAGGCAGTGACCGTAGGCTCGGTCGCGAGTGCCGTCGTCGAAGGCCTTGACGATGACGCCCTTGCGGCCGGCGTAGCGGCCCTGGAGGAGGATCACGGCCTTGTTTGGCTTCAAAAACTTCACCATGGCGGCGGCGCTGTTCTCTCTCTCTCTAAGCTCTTGAAGCTCCTCGCTTGGTTTCGGCAAGTGTGGCCAGGAAAACCTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

11.18

Weight (kDa)

5.61

Isoelectric Point (pI)

11.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018784)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22321 FvH4_3g30191 FvH4_3g31746 FvH4_3g31746
pyrus_communis pycom09g05880
rosa_chinensis RchiOBHm_Chr7g0220901
rosa_multiflora Rmu_sc0000756.1_g000011
rosa_roxburghii Rroxscaffold_2G00094810
rosa_samantha Rh5BG308800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 137
AciI CCGC 6 cut(s) 51, 74, 176, 188, 240, 243
AclWI GGATC 2 cut(s) 84, 210
AcoI YGGCCR 3 cut(s) 61, 177, 302
AcyI GRCGYC 1 cut(s) 168
AfaI GTAC 1 cut(s) 93
AfiI CCNNNNNNNGG 2 cut(s) 88, 199
AgsI TTSAA 2 cut(s) 224, 274
AjnI CCWGG 3 cut(s) 111, 192, 304
AluBI AGCT 3 cut(s) 19, 268, 277
AluI AGCT 3 cut(s) 19, 268, 277
AlwI GGATC 2 cut(s) 84, 210
Ama87I CYCGRG 1 cut(s) 87
AoxI GGCC 6 cut(s) 61, 154, 177, 189, 208, 302
Asp700I GAANNNNTTC 1 cut(s) 30
AspLEI GCGC 1 cut(s) 248
AspS9I GGNCC 1 cut(s) 190
AsuHPI GGTGA 3 cut(s) 26, 71, 224
AvaI CYCGRG 1 cut(s) 87
BalI TGGCCA 1 cut(s) 304
BbsI GAAGAC 1 cut(s) 47
BceAI ACGGC 2 cut(s) 128, 223
BciT130I CCWGG 3 cut(s) 113, 194, 306
BfoI RGCGCY 1 cut(s) 249
BglI GCCNNNNNGGC 1 cut(s) 176
BisI GCNGC 4 cut(s) 177, 189, 241, 244
BlsI GCNGC 4 cut(s) 178, 190, 242, 245
Bme1390I CCNGG 3 cut(s) 113, 194, 306
BmeT110I CYCGRG 1 cut(s) 87
BmgT120I GGNCC 1 cut(s) 190
BmrFI CCNGG 3 cut(s) 113, 194, 306
BpiI GAAGAC 1 cut(s) 47
BpmI CTGGAG 1 cut(s) 215
BsaHI GRCGYC 1 cut(s) 168
BsaJI CCNNGG 2 cut(s) 192, 235
Bsc4I CCNNNNNNNGG 2 cut(s) 88, 199
Bse118I RCCGGY 1 cut(s) 179
BseBI CCWGG 3 cut(s) 113, 194, 306
BseDI CCNNGG 2 cut(s) 192, 235
BseLI CCNNNNNNNGG 2 cut(s) 88, 199
BseRI GAGGAG 2 cut(s) 212, 269
BseX3I CGGCCG 1 cut(s) 177
Bsh1236I CGCG 1 cut(s) 137
Bsh1285I CGRYCG 2 cut(s) 135, 180
BshFI GGCC 6 cut(s) 63, 156, 179, 191, 210, 304
BsiEI CGRYCG 2 cut(s) 135, 180
BsiHKCI CYCGRG 1 cut(s) 87
BsiSI CCGG 2 cut(s) 105, 180
BslI CCNNNNNNNGG 2 cut(s) 88, 199
BsnI GGCC 6 cut(s) 63, 156, 179, 191, 210, 304
BsoBI CYCGRG 1 cut(s) 87
Bsp143I GATC 2 cut(s) 76, 202
Bsp19I CCATGG 1 cut(s) 235
Bsp68I TCGCGA 1 cut(s) 137
BspACI CCGC 6 cut(s) 51, 74, 176, 188, 240, 243
BspANI GGCC 6 cut(s) 63, 156, 179, 191, 210, 304
BspFNI CGCG 1 cut(s) 137
BspPI GGATC 2 cut(s) 84, 210
BsrFI RCCGGY 1 cut(s) 179
BssAI RCCGGY 1 cut(s) 179
BssECI CCNNGG 2 cut(s) 192, 235
BssMI GATC 2 cut(s) 76, 202
BssNI GRCGYC 1 cut(s) 168
BssT1I CCWWGG 1 cut(s) 235
Bst2UI CCWGG 3 cut(s) 113, 194, 306
Bst4CI ACNGT 1 cut(s) 124
BstACI GRCGYC 1 cut(s) 168
BstC8I GCNNGC 1 cut(s) 181
BstDEI CTNAG 2 cut(s) 264, 315
BstDSI CCRYGG 1 cut(s) 235
BstENI CCTNNNNNAGG 1 cut(s) 197
BstFNI CGCG 1 cut(s) 137
BstH2I RGCGCY 1 cut(s) 249
BstHHI GCGC 1 cut(s) 248
BstKTI GATC 2 cut(s) 79, 205
BstMBI GATC 2 cut(s) 76, 202
BstMCI CGRYCG 2 cut(s) 135, 180
BstMWI GCNNNNNNNGC 4 cut(s) 176, 185, 274, 301
BstNI CCWGG 3 cut(s) 113, 194, 306
BstSCI CCNGG 3 cut(s) 111, 192, 304
BstUI CGCG 1 cut(s) 137
BstV2I GAAGAC 1 cut(s) 47
BstZI CGGCCG 1 cut(s) 177
BsuRI GGCC 6 cut(s) 63, 156, 179, 191, 210, 304
BtgI CCRYGG 1 cut(s) 235
BtsI GCAGTG 1 cut(s) 123
BtsIMutI CAGTG 1 cut(s) 123
BtuMI TCGCGA 1 cut(s) 137
Cac8I GCNNGC 1 cut(s) 181
CfoI GCGC 1 cut(s) 248
Cfr10I RCCGGY 1 cut(s) 179
Cfr13I GGNCC 1 cut(s) 190
CseI GACGC 1 cut(s) 176
Csp6I GTAC 1 cut(s) 92
CviAII CATG 1 cut(s) 236
CviQI GTAC 1 cut(s) 92
DdeI CTNAG 2 cut(s) 264, 315
DpnI GATC 2 cut(s) 78, 204
DpnII GATC 2 cut(s) 76, 202
EaeI YGGCCR 3 cut(s) 61, 177, 302
EagI CGGCCG 1 cut(s) 177
EclXI CGGCCG 1 cut(s) 177
Eco130I CCWWGG 1 cut(s) 235
Eco147I AGGCCT 1 cut(s) 156
Eco52I CGGCCG 1 cut(s) 177
Eco88I CYCGRG 1 cut(s) 87
EcoNI CCTNNNNNAGG 1 cut(s) 197
EcoRII CCWGG 3 cut(s) 111, 192, 304
EcoT14I CCWWGG 1 cut(s) 235
ErhI CCWWGG 1 cut(s) 235
FaeI CATG 1 cut(s) 239
FaiI YATR 1 cut(s) 237
FatI CATG 1 cut(s) 235
Fnu4HI GCNGC 4 cut(s) 177, 189, 241, 244
Fsp4HI GCNGC 4 cut(s) 177, 189, 241, 244
GlaI GCGC 1 cut(s) 247
GluI GCNGC 4 cut(s) 177, 189, 241, 244
GsuI CTGGAG 1 cut(s) 215
HaeII RGCGCY 1 cut(s) 249
HaeIII GGCC 6 cut(s) 63, 156, 179, 191, 210, 304
HapII CCGG 2 cut(s) 105, 180
HgaI GACGC 1 cut(s) 176
HhaI GCGC 1 cut(s) 248
Hin1I GRCGYC 1 cut(s) 168
Hin1II CATG 1 cut(s) 239
Hin6I GCGC 1 cut(s) 246
HinP1I GCGC 1 cut(s) 246
HincII GTYRAC 1 cut(s) 13
HindII GTYRAC 1 cut(s) 13
HinfI GANTC 2 cut(s) 66, 101
HpaII CCGG 2 cut(s) 105, 180
HphI GGTGA 3 cut(s) 26, 71, 224
Hpy166II GTNNAC 1 cut(s) 13
Hpy188III TCNNGA 3 cut(s) 98, 136, 271
Hpy8I GTNNAC 1 cut(s) 13
Hpy99I CGWCG 2 cut(s) 149, 152
HpyAV CCTTC 2 cut(s) 20, 146
HpyCH4III ACNGT 1 cut(s) 124
HpyF10VI GCNNNNNNNGC 4 cut(s) 176, 185, 274, 301
HpyF3I CTNAG 2 cut(s) 264, 315
Hsp92I GRCGYC 1 cut(s) 168
Hsp92II CATG 1 cut(s) 239
HspAI GCGC 1 cut(s) 246
KroI GCCGGC 1 cut(s) 179
KroNI GCCGGC 1 cut(s) 181
Kzo9I GATC 2 cut(s) 76, 202
LmnI GCTCC 1 cut(s) 282
LpnPI CCDG 7 cut(s) 98, 118, 125, 179, 193, 206, 291
MaeIII GTNAC 1 cut(s) 118
MalI GATC 2 cut(s) 78, 204
MboI GATC 2 cut(s) 76, 202
MboII GAAGA 1 cut(s) 47
MlsI TGGCCA 1 cut(s) 304
MluNI TGGCCA 1 cut(s) 304
MlyI GAGTC 1 cut(s) 75
MnlI CCTC 4 cut(s) 48, 190, 193, 290
Mox20I TGGCCA 1 cut(s) 304
MroNI GCCGGC 1 cut(s) 179
MroXI GAANNNNTTC 1 cut(s) 30
MscI TGGCCA 1 cut(s) 304
Msp20I TGGCCA 1 cut(s) 304
MspI CCGG 2 cut(s) 105, 180
MspR9I CCNGG 3 cut(s) 113, 194, 306
MvaI CCWGG 3 cut(s) 113, 194, 306
MvnI CGCG 1 cut(s) 137
MwoI GCNNNNNNNGC 4 cut(s) 176, 185, 274, 301
NaeI GCCGGC 1 cut(s) 181
NcoI CCATGG 1 cut(s) 235
NdeII GATC 2 cut(s) 76, 202
NgoMIV GCCGGC 1 cut(s) 179
NlaIII CATG 1 cut(s) 239
NmeAIII GCCGAG 1 cut(s) 89
NmuCI GTSAC 1 cut(s) 118
NruI TCGCGA 1 cut(s) 137
PceI AGGCCT 1 cut(s) 156
PcsI WCGNNNNNNNCGW 2 cut(s) 21, 141
PdiI GCCGGC 1 cut(s) 181
PdmI GAANNNNTTC 1 cut(s) 30
PfeI GAWTC 1 cut(s) 101
PkrI GCNGC 4 cut(s) 178, 190, 242, 245
PleI GAGTC 1 cut(s) 74
PpsI GAGTC 1 cut(s) 74
Psp6I CCWGG 3 cut(s) 111, 192, 304
PspGI CCWGG 3 cut(s) 111, 192, 304
PspPI GGNCC 1 cut(s) 190
RruI TCGCGA 1 cut(s) 137
RsaI GTAC 1 cut(s) 93
RsaNI GTAC 1 cut(s) 92
SatI GCNGC 4 cut(s) 177, 189, 241, 244
Sau3AI GATC 2 cut(s) 76, 202
Sau96I GGNCC 1 cut(s) 190
SchI GAGTC 1 cut(s) 75
ScrFI CCNGG 3 cut(s) 113, 194, 306
SetI ASST 5 cut(s) 21, 84, 270, 279, 316
SseBI AGGCCT 1 cut(s) 156
SsiI CCGC 6 cut(s) 51, 74, 176, 188, 240, 243
StuI AGGCCT 1 cut(s) 156
StyD4I CCNGG 3 cut(s) 111, 192, 304
StyI CCWWGG 1 cut(s) 235
TaaI ACNGT 1 cut(s) 124
TaqI TCGA 2 cut(s) 40, 150
TaqII GACCGA 1 cut(s) 121
TauI GCSGC 4 cut(s) 179, 191, 243, 246
TfiI GAWTC 1 cut(s) 101
TscAI CASTG 1 cut(s) 123
TseFI GTSAC 1 cut(s) 118
Tsp45I GTSAC 1 cut(s) 118
TspRI CASTG 1 cut(s) 123
XagI CCTNNNNNAGG 1 cut(s) 197
XmnI GAANNNNTTC 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.