Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0018784

Physical Location & Seq

Genomic Coordinates Reverse (-)

4375544 .. 4376059

Gene Structure 516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g05880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGCGGCGCCGTACGGAAAGGTCCTCAGAACCTGAGCTTGGTGAAGAACCACCTGTTCTTCCCAGTCTTGAACCGCTCCTCGAACCGCTTCTTGACCTCCTTCAAAGCAGTGACCTTCTTGTCCTTTGTCTGCAAGCACTCGACGTTGACGACGTCTTTGAGATCCACGTCCAGGGTGTAGCGCGTTGGCATCAGGTGCTGGTAGTTCACGAGCTTGATGAAGGCCTTCACTCTGGATTTCTTGGCCGTCTTCTTGGCGGAGTCCTTGCGGATGACCTTGCCTGGGTACTTCTTAATCCCCGCAACCAAACAGTGGCCGTAGGGACGGTCGCGGGTGCCCTCGTCGAAGGCGCGTACGATGACGGCCTTGCGCCCGGCGTAGCGGCCCTGGAGGTTGATCACCGCCTTGTTTGGCTTCAGAAACTTCACCATGGCTGGTTTCTCTCTCTTCTCTCTCACTCTCTCTCTCTCTCTGTCGCTCGAGTTTCGGCAAAGAGTGGGGAGGAAAAACCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002683 GO:0003674 GO:0003676 GO:0003677 GO:0003680 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031347 GO:0031348 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045088 GO:0045824 GO:0048519 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF296

Protein Analysis

172

Amino Acids

18.65

Weight (kDa)

4.85

Isoelectric Point (pI)

49.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018784)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22321 FvH4_3g30191 FvH4_3g31746 FvH4_3g31746
pyrus_communis	pycom09g05880
rosa_chinensis	RchiOBHm_Chr7g0220901
rosa_multiflora	Rmu_sc0000756.1_g000011
rosa_roxburghii	Rroxscaffold_2G00094810
rosa_samantha	Rh5BG308800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	119
AatII	GACGTC	1 cut(s)	156
AccB1I	GGYRCC	2 cut(s)	6, 335
AccB7I	CCANNNNNTGG	1 cut(s)	313
AccBSI	CCGCTC	1 cut(s)	76
AccII	CGCG	3 cut(s)	184, 332, 353
AciI	CCGC	9 cut(s)	4, 74, 86, 258, 269, 301, 332, 383, 403
AclWI	GGATC	1 cut(s)	157
AcoI	YGGCCR	2 cut(s)	244, 315
AcuI	CTGAAG	1 cut(s)	401
AcyI	GRCGYC	2 cut(s)	7, 153
AfaI	GTAC	3 cut(s)	13, 288, 356
AfiI	CCNNNNNNNGG	4 cut(s)	38, 172, 283, 313
AgsI	TTSAA	2 cut(s)	71, 104
AjiI	CACGTC	1 cut(s)	169
AjnI	CCWGG	3 cut(s)	171, 281, 387
AjuI	GAANNNNNNNTTGG	2 cut(s)	21, 53
AluBI	AGCT	2 cut(s)	37, 214
AluI	AGCT	2 cut(s)	37, 214
AlwI	GGATC	1 cut(s)	157
AlwNI	CAGNNNCTG	2 cut(s)	32, 199
Ama87I	CYCGRG	1 cut(s)	480
AoxI	GGCC	5 cut(s)	223, 244, 315, 364, 384
ArsI	GACNNNNNNTTYG	2 cut(s)	140, 172
Asp700I	GAANNNNTTC	2 cut(s)	87, 225
AspLEI	GCGC	4 cut(s)	9, 184, 353, 373
AspS9I	GGNCC	2 cut(s)	21, 385
AsuC2I	CCSGG	1 cut(s)	375
AsuHPI	GGTGA	3 cut(s)	53, 392, 419
AvaI	CYCGRG	1 cut(s)	480
AvaII	GGWCC	1 cut(s)	21
BaeGI	GKGCMC	1 cut(s)	340
BanI	GGYRCC	2 cut(s)	6, 335
BauI	CACGAG	1 cut(s)	209
BbsI	GAAGAC	1 cut(s)	242
BceAI	ACGGC	3 cut(s)	231, 302, 379
BciT130I	CCWGG	3 cut(s)	173, 283, 389
BclI	TGATCA	1 cut(s)	397
BcnI	CCSGG	1 cut(s)	375
BfaI	CTAG	1 cut(s)	514
BfoI	RGCGCY	1 cut(s)	10
BisI	GCNGC	2 cut(s)	5, 384
BlsI	GCNGC	2 cut(s)	6, 385
Bme1390I	CCNGG	4 cut(s)	173, 283, 375, 389
Bme18I	GGWCC	1 cut(s)	21
BmeT110I	CYCGRG	1 cut(s)	480
BmgBI	CACGTC	1 cut(s)	169
BmgT120I	GGNCC	2 cut(s)	21, 385
BmiI	GGNNCC	2 cut(s)	8, 337
BmrFI	CCNGG	4 cut(s)	173, 283, 375, 389
BmrI	ACTGGG	1 cut(s)	57
BmsI	GCATC	1 cut(s)	199
BmuI	ACTGGG	1 cut(s)	57
BpiI	GAAGAC	1 cut(s)	242
BpmI	CTGGAG	1 cut(s)	410
Bpu10I	CCTNAGC	1 cut(s)	33
BpuMI	CCSGG	1 cut(s)	375
BsaHI	GRCGYC	2 cut(s)	7, 153
BsaJI	CCNNGG	4 cut(s)	172, 282, 387, 430
Bsc4I	CCNNNNNNNGG	4 cut(s)	38, 172, 283, 313
Bse1I	ACTGG	1 cut(s)	63
BseBI	CCWGG	3 cut(s)	173, 283, 389
BseDI	CCNNGG	4 cut(s)	172, 282, 387, 430
BseGI	GGATG	1 cut(s)	277
BseLI	CCNNNNNNNGG	4 cut(s)	38, 172, 283, 313
BseMII	CTCAG	2 cut(s)	24, 39
BseNI	ACTGG	1 cut(s)	63
BseRI	GAGGAG	1 cut(s)	68
BseSI	GKGCMC	1 cut(s)	340
Bsh1236I	CGCG	3 cut(s)	184, 332, 353
Bsh1285I	CGRYCG	1 cut(s)	330
BshFI	GGCC	5 cut(s)	225, 246, 317, 366, 386
BshNI	GGYRCC	2 cut(s)	6, 335
BsiEI	CGRYCG	1 cut(s)	330
BsiHKCI	CYCGRG	1 cut(s)	480
BsiSI	CCGG	1 cut(s)	375
BsiWI	CGTACG	2 cut(s)	11, 354
BslFI	GGGAC	1 cut(s)	337
BslI	CCNNNNNNNGG	4 cut(s)	38, 172, 283, 313
BsmFI	GGGAC	1 cut(s)	337
BsnI	GGCC	5 cut(s)	225, 246, 317, 366, 386
BsoBI	CYCGRG	1 cut(s)	480
Bsp1286I	GDGCHC	1 cut(s)	340
Bsp143I	GATC	2 cut(s)	162, 397
Bsp19I	CCATGG	1 cut(s)	430
BspACI	CCGC	9 cut(s)	4, 74, 86, 258, 269, 301, 332, 383, 403
BspANI	GGCC	5 cut(s)	225, 246, 317, 366, 386
BspCNI	CTCAG	2 cut(s)	25, 38
BspFNI	CGCG	3 cut(s)	184, 332, 353
BspLI	GGNNCC	2 cut(s)	8, 337
BspPI	GGATC	1 cut(s)	157
BspT107I	GGYRCC	2 cut(s)	6, 335
BsrBI	CCGCTC	1 cut(s)	76
BsrI	ACTGG	1 cut(s)	63
BssECI	CCNNGG	4 cut(s)	172, 282, 387, 430
BssMI	GATC	2 cut(s)	162, 397
BssNI	GRCGYC	2 cut(s)	7, 153
BssSI	CACGAG	1 cut(s)	209
BssT1I	CCWWGG	1 cut(s)	430
Bst2BI	CACGAG	1 cut(s)	209
Bst2UI	CCWGG	3 cut(s)	173, 283, 389
Bst4CI	ACNGT	2 cut(s)	313, 328
Bst6I	CTCTTC	1 cut(s)	453
BstACI	GRCGYC	2 cut(s)	7, 153
BstAPI	GCANNNNNTGC	1 cut(s)	196
BstC8I	GCNNGC	1 cut(s)	135
BstDEI	CTNAG	2 cut(s)	25, 33
BstDSI	CCRYGG	1 cut(s)	430
BstF5I	GGATG	1 cut(s)	277
BstFNI	CGCG	3 cut(s)	184, 332, 353
BstH2I	RGCGCY	1 cut(s)	10
BstHHI	GCGC	4 cut(s)	9, 184, 353, 373
BstKTI	GATC	2 cut(s)	165, 400
BstMBI	GATC	2 cut(s)	162, 397
BstMCI	CGRYCG	1 cut(s)	330
BstMWI	GCNNNNNNNGC	1 cut(s)	196
BstNI	CCWGG	3 cut(s)	173, 283, 389
BstSCI	CCNGG	4 cut(s)	171, 281, 373, 387
BstSLI	GKGCMC	1 cut(s)	340
BstUI	CGCG	3 cut(s)	184, 332, 353
BstV2I	GAAGAC	1 cut(s)	242
BstX2I	RGATCY	1 cut(s)	162
BstYI	RGATCY	1 cut(s)	162
BsuRI	GGCC	5 cut(s)	225, 246, 317, 366, 386
BtgI	CCRYGG	1 cut(s)	430
BtrI	CACGTC	1 cut(s)	169
BtsCI	GGATG	1 cut(s)	277
BtsI	GCAGTG	1 cut(s)	115
BtsIMutI	CAGTG	2 cut(s)	115, 318
Cac8I	GCNNGC	1 cut(s)	135
CaiI	CAGNNNCTG	2 cut(s)	32, 199
CfoI	GCGC	4 cut(s)	9, 184, 353, 373
Cfr13I	GGNCC	2 cut(s)	21, 385
Csp6I	GTAC	3 cut(s)	12, 287, 355
CviAII	CATG	1 cut(s)	431
CviJI	RGCY	9 cut(s)	37, 214, 225, 246, 317, 366, 386, 415, 435
CviKI_1	RGCY	9 cut(s)	37, 214, 225, 246, 317, 366, 386, 415, 435
CviQI	GTAC	3 cut(s)	12, 287, 355
DdeI	CTNAG	2 cut(s)	25, 33
DinI	GGCGCC	1 cut(s)	8
DpnI	GATC	2 cut(s)	164, 399
DpnII	GATC	2 cut(s)	162, 397
DrdI	GACNNNNNNGTC	1 cut(s)	119
DseDI	GACNNNNNNGTC	1 cut(s)	119
EaeI	YGGCCR	2 cut(s)	244, 315
Eam1104I	CTCTTC	1 cut(s)	453
EarI	CTCTTC	1 cut(s)	453
EciI	GGCGGA	1 cut(s)	273
Eco130I	CCWWGG	1 cut(s)	430
Eco147I	AGGCCT	1 cut(s)	225
Eco47I	GGWCC	1 cut(s)	21
Eco57I	CTGAAG	1 cut(s)	401
Eco88I	CYCGRG	1 cut(s)	480
EcoO109I	RGGNCCY	1 cut(s)	21
EcoRII	CCWGG	3 cut(s)	171, 281, 387
EcoT14I	CCWWGG	1 cut(s)	430
EgeI	GGCGCC	1 cut(s)	8
EheI	GGCGCC	1 cut(s)	8
ErhI	CCWWGG	1 cut(s)	430
FaeI	CATG	1 cut(s)	434
FaiI	YATR	1 cut(s)	432
FaqI	GGGAC	1 cut(s)	337
FatI	CATG	1 cut(s)	430
FauI	CCCGC	2 cut(s)	308, 325
FbaI	TGATCA	1 cut(s)	397
Fnu4HI	GCNGC	2 cut(s)	5, 384
FokI	GGATG	1 cut(s)	284
Fsp4HI	GCNGC	2 cut(s)	5, 384
FspBI	CTAG	1 cut(s)	514
GlaI	GCGC	4 cut(s)	8, 183, 352, 372
GluI	GCNGC	2 cut(s)	5, 384
GsuI	CTGGAG	1 cut(s)	410
HaeII	RGCGCY	1 cut(s)	10
HaeIII	GGCC	5 cut(s)	225, 246, 317, 366, 386
HapII	CCGG	1 cut(s)	375
HhaI	GCGC	4 cut(s)	9, 184, 353, 373
Hin1I	GRCGYC	2 cut(s)	7, 153
Hin1II	CATG	1 cut(s)	434
Hin6I	GCGC	4 cut(s)	7, 182, 351, 371
HinP1I	GCGC	4 cut(s)	7, 182, 351, 371
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HinfI	GANTC	1 cut(s)	261
HpaII	CCGG	1 cut(s)	375
HphI	GGTGA	3 cut(s)	53, 392, 419
Hpy166II	GTNNAC	2 cut(s)	148, 208
Hpy188I	TCNGA	2 cut(s)	28, 420
Hpy188III	TCNNGA	4 cut(s)	68, 92, 209, 234
Hpy8I	GTNNAC	2 cut(s)	148, 208
Hpy99I	CGWCG	3 cut(s)	146, 155, 347
HpyAV	CCTTC	5 cut(s)	110, 125, 215, 236, 341
HpyCH4III	ACNGT	2 cut(s)	313, 328
HpyCH4IV	ACGT	3 cut(s)	144, 153, 168
HpyCH4V	TGCA	1 cut(s)	133
HpyF10VI	GCNNNNNNNGC	1 cut(s)	196
HpyF3I	CTNAG	2 cut(s)	25, 33
HpySE526I	ACGT	3 cut(s)	144, 153, 168
Hsp92I	GRCGYC	2 cut(s)	7, 153
Hsp92II	CATG	1 cut(s)	434
HspAI	GCGC	4 cut(s)	7, 182, 351, 371
KasI	GGCGCC	1 cut(s)	6
Ksp22I	TGATCA	1 cut(s)	397
Kzo9I	GATC	2 cut(s)	162, 397
LmnI	GCTCC	1 cut(s)	81
LweI	GCATC	1 cut(s)	199
MaeI	CTAG	1 cut(s)	514
MaeII	ACGT	3 cut(s)	144, 153, 168
MaeIII	GTNAC	1 cut(s)	110
MalI	GATC	2 cut(s)	164, 399
MbiI	CCGCTC	1 cut(s)	76
MboI	GATC	2 cut(s)	162, 397
MboII	GAAGA	4 cut(s)	50, 56, 242, 440
MflI	RGATCY	1 cut(s)	162
MhlI	GDGCHC	1 cut(s)	340
Mly113I	GGCGCC	1 cut(s)	7
MlyI	GAGTC	1 cut(s)	270
MnlI	CCTC	6 cut(s)	34, 89, 107, 350, 385, 496
MroXI	GAANNNNTTC	2 cut(s)	87, 225
MseI	TTAA	1 cut(s)	294
MspI	CCGG	1 cut(s)	375
MspR9I	CCNGG	4 cut(s)	173, 283, 375, 389
MvaI	CCWGG	3 cut(s)	173, 283, 389
MvnI	CGCG	3 cut(s)	184, 332, 353
MwoI	GCNNNNNNNGC	1 cut(s)	196
NarI	GGCGCC	1 cut(s)	7
NciI	CCSGG	1 cut(s)	375
NcoI	CCATGG	1 cut(s)	430
NdeII	GATC	2 cut(s)	162, 397
NlaIII	CATG	1 cut(s)	434
NlaIV	GGNNCC	2 cut(s)	8, 337
NmuCI	GTSAC	1 cut(s)	110
PaeR7I	CTCGAG	1 cut(s)	480
PceI	AGGCCT	1 cut(s)	225
PcsI	WCGNNNNNNNCGW	2 cut(s)	147, 150
PdmI	GAANNNNTTC	2 cut(s)	87, 225
Pfl23II	CGTACG	2 cut(s)	11, 354
PflFI	GACNNNGTC	1 cut(s)	152
PflMI	CCANNNNNTGG	1 cut(s)	313
PkrI	GCNGC	2 cut(s)	6, 385
PleI	GAGTC	1 cut(s)	269
PluTI	GGCGCC	1 cut(s)	10
PpsI	GAGTC	1 cut(s)	269
PpuMI	RGGWCCY	1 cut(s)	21
Psp5II	RGGWCCY	1 cut(s)	21
Psp6I	CCWGG	3 cut(s)	171, 281, 387
PspGI	CCWGG	3 cut(s)	171, 281, 387
PspLI	CGTACG	2 cut(s)	11, 354
PspN4I	GGNNCC	2 cut(s)	8, 337
PspPI	GGNCC	2 cut(s)	21, 385
PspPPI	RGGWCCY	1 cut(s)	21
PspXI	VCTCGAGB	1 cut(s)	480
PstNI	CAGNNNCTG	2 cut(s)	32, 199
PsuI	RGATCY	1 cut(s)	162
PsyI	GACNNNGTC	1 cut(s)	152
RsaI	GTAC	3 cut(s)	13, 288, 356
RsaNI	GTAC	3 cut(s)	12, 287, 355
SaqAI	TTAA	1 cut(s)	294
SatI	GCNGC	2 cut(s)	5, 384
Sau3AI	GATC	2 cut(s)	162, 397
Sau96I	GGNCC	2 cut(s)	21, 385
SchI	GAGTC	1 cut(s)	270
ScrFI	CCNGG	4 cut(s)	173, 283, 375, 389
SduI	GDGCHC	1 cut(s)	340
SfaNI	GCATC	1 cut(s)	199
SfoI	GGCGCC	1 cut(s)	8
Sfr274I	CTCGAG	1 cut(s)	480
SinI	GGWCC	1 cut(s)	21
SlaI	CTCGAG	1 cut(s)	480
SmlI	CTYRAG	1 cut(s)	480
SmoI	CTYRAG	1 cut(s)	480
SseBI	AGGCCT	1 cut(s)	225
SsiI	CCGC	9 cut(s)	4, 74, 86, 258, 269, 301, 332, 383, 403
SspDI	GGCGCC	1 cut(s)	6
SspMI	CTAG	1 cut(s)	514
StuI	AGGCCT	1 cut(s)	225
StyD4I	CCNGG	4 cut(s)	171, 281, 373, 387
StyI	CCWWGG	1 cut(s)	430
TaaI	ACNGT	2 cut(s)	313, 328
TaiI	ACGT	3 cut(s)	147, 156, 171
TaqI	TCGA	4 cut(s)	81, 141, 345, 481
TauI	GCSGC	2 cut(s)	7, 386
Tru1I	TTAA	1 cut(s)	294
Tru9I	TTAA	1 cut(s)	294
TscAI	CASTG	2 cut(s)	115, 318
TseFI	GTSAC	1 cut(s)	110
Tsp45I	GTSAC	1 cut(s)	110
TspDTI	ATGAA	1 cut(s)	234
TspGWI	ACGGA	1 cut(s)	29
TspRI	CASTG	2 cut(s)	115, 318
Tth111I	GACNNNGTC	1 cut(s)	152
Van91I	CCANNNNNTGG	1 cut(s)	313
VpaK11BI	GGWCC	1 cut(s)	21
XhoI	CTCGAG	1 cut(s)	480
XmnI	GAANNNNTTC	2 cut(s)	87, 225
XspI	CTAG	1 cut(s)	514
ZraI	GACGTC	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.