Rh5BG308800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0018784
Physical Location & Seq
Reverse (-)
40336144 .. 40351888
15745 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG308800.1

Sequence Viewer

Length: 552 bp
ATGATGCAACATATGTTGACTGCTAGTTTGATTGAGGAAAGCATCATCCTCATCAATCTGACCAATCTTTGTGAAACCAGCTGGACCCTTGTATCTATTGGAACCCGGAGTAGACTGCAAGCTAGCATCAATGGAACTGTTCCGTGCTCTTTGGAGATGAGTGTAGTCGACGCCCTAGACGATGAAGGCCTTGCGGCCGGCGTAGCGACTGTGGAGGAGGATCACCGCATTGGTTGGCCTCAGACACTTCACCGTGCTGGCAGCCTCTCTCCTGGGTTCTTTCAAAGCTCTCGCTGCTCCCGCTTGAAATCACCCAAAACAAGGAAGAAGAAACAGAGACCCGAATTAATCATGGCGGCCGAAATTCAGCAACGGGGAAAGAGACAAGCGGGACCGGTGCCGGACTTGAACTGGAAGAGCAAGCAGTCGCGGCTACACTCCTTGAGGCTGGTCTCGACGCGATCGATCTTCTTGGTCTTGGTCTGGATTGTGAGATTGTCTGAGTATTTGAAGCTTGAGAGGAAAGAAAAGGTCACCATTCGAAGAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

183

Amino Acids

20.74

Weight (kDa)

10.27

Isoelectric Point (pI)

56.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018784)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22321 FvH4_3g30191 FvH4_3g31746 FvH4_3g31746
pyrus_communis pycom09g05880
rosa_chinensis RchiOBHm_Chr7g0220901
rosa_multiflora Rmu_sc0000756.1_g000011
rosa_roxburghii Rroxscaffold_2G00094810
rosa_samantha Rh5BG308800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 397
AccI GTMKAC 2 cut(s) 112, 168
AccII CGCG 2 cut(s) 430, 460
AciI CCGC 6 cut(s) 194, 226, 301, 356, 389, 430
AclWI GGATC 1 cut(s) 228
AcoI YGGCCR 2 cut(s) 195, 357
AcsI RAATTY 1 cut(s) 363
AcyI GRCGYC 1 cut(s) 171
AfiI CCNNNNNNNGG 1 cut(s) 321
AgeI ACCGGT 1 cut(s) 394
AgsI TTSAA 4 cut(s) 284, 307, 409, 511
AjnI CCWGG 1 cut(s) 271
AluBI AGCT 4 cut(s) 81, 122, 288, 514
AluI AGCT 4 cut(s) 81, 122, 288, 514
Alw21I GWGCWC 1 cut(s) 149
Alw26I GTCTC 3 cut(s) 331, 376, 457
AlwI GGATC 1 cut(s) 228
AoxI GGCC 4 cut(s) 187, 195, 236, 357
ApeKI GCWGC 2 cut(s) 261, 294
ApoI RAATTY 1 cut(s) 363
ArsI GACNNNNNNTTYG 2 cut(s) 10, 42
AseI ATTAAT 1 cut(s) 347
AsiGI ACCGGT 1 cut(s) 394
AspS9I GGNCC 2 cut(s) 84, 392
AsuC2I CCSGG 1 cut(s) 106
AsuHPI GGTGA 4 cut(s) 215, 242, 303, 526
AsuII TTCGAA 1 cut(s) 541
AsuNHI GCTAGC 1 cut(s) 122
AvaII GGWCC 2 cut(s) 84, 392
BaeI ACNNNNGTAYC 2 cut(s) 75, 108
BanI GGYRCC 1 cut(s) 397
Bbv12I GWGCWC 1 cut(s) 149
BbvI GCAGC 2 cut(s) 273, 281
BciT130I CCWGG 1 cut(s) 273
BcnI CCSGG 1 cut(s) 106
BcoDI GTCTC 3 cut(s) 331, 376, 457
BfaI CTAG 3 cut(s) 24, 123, 176
BisI GCNGC 5 cut(s) 195, 262, 295, 357, 431
BlsI GCNGC 5 cut(s) 196, 263, 296, 358, 432
Bme1390I CCNGG 2 cut(s) 106, 273
Bme18I GGWCC 2 cut(s) 84, 392
BmgT120I GGNCC 2 cut(s) 84, 392
BmiI GGNNCC 4 cut(s) 86, 103, 393, 399
BmrFI CCNGG 2 cut(s) 106, 273
BmsI GCATC 2 cut(s) 51, 135
BmtI GCTAGC 1 cut(s) 126
Bpu14I TTCGAA 1 cut(s) 541
BpuEI CTTGAG 2 cut(s) 463, 536
BpuMI CCSGG 1 cut(s) 106
Bsa29I ATCGAT 1 cut(s) 464
BsaHI GRCGYC 1 cut(s) 171
BsaI GGTCTC 2 cut(s) 331, 457
BsaJI CCNNGG 1 cut(s) 272
BsaWI WCCGGW 1 cut(s) 394
Bsc4I CCNNNNNNNGG 1 cut(s) 321
Bse118I RCCGGY 2 cut(s) 197, 394
Bse1I ACTGG 1 cut(s) 416
BseBI CCWGG 1 cut(s) 273
BseCI ATCGAT 1 cut(s) 464
BseDI CCNNGG 1 cut(s) 272
BseGI GGATG 1 cut(s) 45
BseLI CCNNNNNNNGG 1 cut(s) 321
BseMII CTCAG 2 cut(s) 254, 492
BseNI ACTGG 1 cut(s) 416
BseRI GAGGAG 1 cut(s) 230
BseX3I CGGCCG 2 cut(s) 195, 357
BseXI GCAGC 2 cut(s) 273, 281
Bsh1236I CGCG 2 cut(s) 430, 460
Bsh1285I CGRYCG 3 cut(s) 198, 360, 464
BshFI GGCC 4 cut(s) 189, 197, 238, 359
BshNI GGYRCC 1 cut(s) 397
BshTI ACCGGT 1 cut(s) 394
BshVI ATCGAT 1 cut(s) 464
BsiEI CGRYCG 3 cut(s) 198, 360, 464
BsiHKAI GWGCWC 1 cut(s) 149
BsiSI CCGG 4 cut(s) 106, 198, 395, 401
BslFI GGGAC 1 cut(s) 405
BslI CCNNNNNNNGG 1 cut(s) 321
BsmAI GTCTC 3 cut(s) 331, 376, 457
BsmFI GGGAC 1 cut(s) 405
BsnI GGCC 4 cut(s) 189, 197, 238, 359
Bso31I GGTCTC 2 cut(s) 331, 457
Bsp119I TTCGAA 1 cut(s) 541
Bsp1286I GDGCHC 1 cut(s) 149
Bsp143I GATC 3 cut(s) 220, 461, 465
BspACI CCGC 6 cut(s) 194, 226, 301, 356, 389, 430
BspANI GGCC 4 cut(s) 189, 197, 238, 359
BspCNI CTCAG 2 cut(s) 253, 493
BspDI ATCGAT 1 cut(s) 464
BspFNI CGCG 2 cut(s) 430, 460
BspLI GGNNCC 4 cut(s) 86, 103, 393, 399
BspOI GCTAGC 1 cut(s) 126
BspPI GGATC 1 cut(s) 228
BspQI GCTCTTC 1 cut(s) 410
BspT104I TTCGAA 1 cut(s) 541
BspT107I GGYRCC 1 cut(s) 397
BspTNI GGTCTC 2 cut(s) 331, 457
BsrFI RCCGGY 2 cut(s) 197, 394
BsrI ACTGG 1 cut(s) 416
BssAI RCCGGY 2 cut(s) 197, 394
BssECI CCNNGG 1 cut(s) 272
BssMI GATC 3 cut(s) 220, 461, 465
BssNI GRCGYC 1 cut(s) 171
Bst2UI CCWGG 1 cut(s) 273
Bst4CI ACNGT 3 cut(s) 139, 211, 254
Bst6I CTCTTC 1 cut(s) 410
BstACI GRCGYC 1 cut(s) 171
BstBI TTCGAA 1 cut(s) 541
BstC8I GCNNGC 5 cut(s) 120, 124, 199, 259, 422
BstDEI CTNAG 2 cut(s) 240, 501
BstEII GGTNACC 1 cut(s) 532
BstF5I GGATG 1 cut(s) 45
BstFNI CGCG 2 cut(s) 430, 460
BstKTI GATC 3 cut(s) 223, 464, 468
BstMAI GTCTC 3 cut(s) 331, 376, 457
BstMBI GATC 3 cut(s) 220, 461, 465
BstMCI CGRYCG 3 cut(s) 198, 360, 464
BstMWI GCNNNNNNNGC 4 cut(s) 203, 294, 300, 430
BstNI CCWGG 1 cut(s) 273
BstPI GGTNACC 1 cut(s) 532
BstSCI CCNGG 2 cut(s) 104, 271
BstUI CGCG 2 cut(s) 430, 460
BstV1I GCAGC 2 cut(s) 273, 281
BstZI CGGCCG 2 cut(s) 195, 357
Bsu15I ATCGAT 1 cut(s) 464
BsuRI GGCC 4 cut(s) 189, 197, 238, 359
BsuTUI ATCGAT 1 cut(s) 464
BtsCI GGATG 1 cut(s) 45
Cac8I GCNNGC 5 cut(s) 120, 124, 199, 259, 422
Cfr10I RCCGGY 2 cut(s) 197, 394
Cfr13I GGNCC 2 cut(s) 84, 392
ClaI ATCGAT 1 cut(s) 464
CseI GACGC 2 cut(s) 179, 466
CspAI ACCGGT 1 cut(s) 394
CviAII CATG 1 cut(s) 352
DdeI CTNAG 2 cut(s) 240, 501
DpnI GATC 3 cut(s) 222, 463, 467
DpnII GATC 3 cut(s) 220, 461, 465
EaeI YGGCCR 2 cut(s) 195, 357
EagI CGGCCG 2 cut(s) 195, 357
Eam1104I CTCTTC 1 cut(s) 410
EarI CTCTTC 1 cut(s) 410
EclXI CGGCCG 2 cut(s) 195, 357
Eco147I AGGCCT 1 cut(s) 189
Eco31I GGTCTC 2 cut(s) 331, 457
Eco47I GGWCC 2 cut(s) 84, 392
Eco52I CGGCCG 2 cut(s) 195, 357
Eco91I GGTNACC 1 cut(s) 532
EcoO65I GGTNACC 1 cut(s) 532
EcoRII CCWGG 1 cut(s) 271
FaeI CATG 1 cut(s) 355
FaiI YATR 3 cut(s) 12, 14, 353
FaqI GGGAC 1 cut(s) 405
FatI CATG 1 cut(s) 351
FauI CCCGC 2 cut(s) 308, 382
FauNDI CATATG 1 cut(s) 12
FblI GTMKAC 2 cut(s) 112, 168
Fnu4HI GCNGC 5 cut(s) 195, 262, 295, 357, 431
FokI GGATG 1 cut(s) 32
Fsp4HI GCNGC 5 cut(s) 195, 262, 295, 357, 431
FspBI CTAG 3 cut(s) 24, 123, 176
GluI GCNGC 5 cut(s) 195, 262, 295, 357, 431
HaeIII GGCC 4 cut(s) 189, 197, 238, 359
HapII CCGG 4 cut(s) 106, 198, 395, 401
HgaI GACGC 2 cut(s) 179, 466
Hin1I GRCGYC 1 cut(s) 171
Hin1II CATG 1 cut(s) 355
HincII GTYRAC 2 cut(s) 18, 169
HindII GTYRAC 2 cut(s) 18, 169
HindIII AAGCTT 1 cut(s) 512
HpaII CCGG 4 cut(s) 106, 198, 395, 401
HphI GGTGA 4 cut(s) 215, 242, 303, 526
Hpy166II GTNNAC 3 cut(s) 18, 113, 169
Hpy188I TCNGA 3 cut(s) 60, 243, 502
Hpy188III TCNNGA 2 cut(s) 454, 484
Hpy8I GTNNAC 3 cut(s) 18, 113, 169
Hpy99I CGWCG 2 cut(s) 173, 460
HpyAV CCTTC 2 cut(s) 179, 540
HpyCH4III ACNGT 3 cut(s) 139, 211, 254
HpyCH4V TGCA 2 cut(s) 7, 118
HpyF10VI GCNNNNNNNGC 4 cut(s) 203, 294, 300, 430
HpyF3I CTNAG 2 cut(s) 240, 501
Hsp92I GRCGYC 1 cut(s) 171
Hsp92II CATG 1 cut(s) 355
KroI GCCGGC 1 cut(s) 197
KroNI GCCGGC 1 cut(s) 199
Kzo9I GATC 3 cut(s) 220, 461, 465
LguI GCTCTTC 1 cut(s) 410
LmnI GCTCC 1 cut(s) 302
Lsp1109I GCAGC 2 cut(s) 273, 281
LweI GCATC 2 cut(s) 51, 135
MaeI CTAG 3 cut(s) 24, 123, 176
MaeIII GTNAC 1 cut(s) 532
MalI GATC 3 cut(s) 222, 463, 467
MboI GATC 3 cut(s) 220, 461, 465
MboII GAAGA 4 cut(s) 337, 340, 427, 460
MhlI GDGCHC 1 cut(s) 149
MluCI AATT 2 cut(s) 344, 363
MnlI CCTC 8 cut(s) 28, 59, 208, 211, 249, 275, 438, 513
MroNI GCCGGC 1 cut(s) 197
MseI TTAA 1 cut(s) 347
MspA1I CMGCKG 1 cut(s) 81
MspI CCGG 4 cut(s) 106, 198, 395, 401
MspR9I CCNGG 2 cut(s) 106, 273
MvaI CCWGG 1 cut(s) 273
MvnI CGCG 2 cut(s) 430, 460
MwoI GCNNNNNNNGC 4 cut(s) 203, 294, 300, 430
NaeI GCCGGC 1 cut(s) 199
NciI CCSGG 1 cut(s) 106
NdeI CATATG 1 cut(s) 12
NdeII GATC 3 cut(s) 220, 461, 465
NgoMIV GCCGGC 1 cut(s) 197
NheI GCTAGC 1 cut(s) 122
NlaIII CATG 1 cut(s) 355
NlaIV GGNNCC 4 cut(s) 86, 103, 393, 399
NmuCI GTSAC 1 cut(s) 532
NspV TTCGAA 1 cut(s) 541
PceI AGGCCT 1 cut(s) 189
PciSI GCTCTTC 1 cut(s) 410
PcsI WCGNNNNNNNCGW 2 cut(s) 177, 461
PdiI GCCGGC 1 cut(s) 199
PinAI ACCGGT 1 cut(s) 394
PkrI GCNGC 5 cut(s) 196, 263, 296, 358, 432
Ple19I CGATCG 1 cut(s) 464
PshBI ATTAAT 1 cut(s) 347
Psp6I CCWGG 1 cut(s) 271
PspEI GGTNACC 1 cut(s) 532
PspGI CCWGG 1 cut(s) 271
PspN4I GGNNCC 4 cut(s) 86, 103, 393, 399
PspPI GGNCC 2 cut(s) 84, 392
PvuI CGATCG 1 cut(s) 464
PvuII CAGCTG 1 cut(s) 81
SalI GTCGAC 1 cut(s) 167
SapI GCTCTTC 1 cut(s) 410
SaqAI TTAA 1 cut(s) 347
SatI GCNGC 5 cut(s) 195, 262, 295, 357, 431
Sau3AI GATC 3 cut(s) 220, 461, 465
Sau96I GGNCC 2 cut(s) 84, 392
ScrFI CCNGG 2 cut(s) 106, 273
SduI GDGCHC 1 cut(s) 149
SetI ASST 6 cut(s) 83, 124, 290, 516, 534, 551
SfaNI GCATC 2 cut(s) 51, 135
SfuI TTCGAA 1 cut(s) 541
SinI GGWCC 2 cut(s) 84, 392
SmlI CTYRAG 2 cut(s) 442, 515
SmoI CTYRAG 2 cut(s) 442, 515
Sse9I AATT 2 cut(s) 344, 363
SseBI AGGCCT 1 cut(s) 189
SsiI CCGC 6 cut(s) 194, 226, 301, 356, 389, 430
SspMI CTAG 3 cut(s) 24, 123, 176
StuI AGGCCT 1 cut(s) 189
StyD4I CCNGG 2 cut(s) 104, 271
TaaI ACNGT 3 cut(s) 139, 211, 254
TaqI TCGA 4 cut(s) 168, 455, 464, 541
TasI AATT 2 cut(s) 344, 363
TauI GCSGC 3 cut(s) 197, 359, 433
Tru1I TTAA 1 cut(s) 347
Tru9I TTAA 1 cut(s) 347
TseFI GTSAC 1 cut(s) 532
TseI GCWGC 2 cut(s) 261, 294
Tsp45I GTSAC 1 cut(s) 532
TspDTI ATGAA 1 cut(s) 198
TspGWI ACGGA 1 cut(s) 132
VpaK11BI GGWCC 2 cut(s) 84, 392
VspI ATTAAT 1 cut(s) 347
XapI RAATTY 1 cut(s) 363
XmiI GTMKAC 2 cut(s) 112, 168
XspI CTAG 3 cut(s) 24, 123, 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.