FvH4_3g31746

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0018784
Physical Location & Seq
Forward (+)
26580540 .. 26588643
8104 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g31746.t1

Sequence Viewer

Length: 354 bp
ATGACTCCACCTATGAGTGTTGAAAAAGGTAGGGTTACTCATTTTCAAGGGAAGTTATGCCAAAATTTTGGTAGAATTTCCCTTGAGGTGGGTCCCGCAGGGTTTATTCCGGATTTCAAGGGGAAATCCGGGGTAGGTCCTGACAGCTCTGGTCGTCCGTGGTGTTCCGTCGCCGGAACTTCCTCCTCAGGCCACCAATCCGGGCAAGCCTTATATGGTTTTGAAGGTCTTCAACCCAGTAGCCTTGCCCTAAAAGGACTCAATCCAGTTTGCTTCAGGTCACCGGTGCCGGTCGCCGCTGCCGGTAGAGTAGACGTCAGCACCGCCGCTGTTAGGGAGATTTTCATGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

12.15

Weight (kDa)

9.3

Isoelectric Point (pI)

34.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018784)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22321 FvH4_3g30191 FvH4_3g31746 FvH4_3g31746
pyrus_communis pycom09g05880
rosa_chinensis RchiOBHm_Chr7g0220901
rosa_multiflora Rmu_sc0000756.1_g000011
rosa_roxburghii Rroxscaffold_2G00094810
rosa_samantha Rh5BG308800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 318
AccB1I GGYRCC 1 cut(s) 286
AccI GTMKAC 1 cut(s) 312
AccIII TCCGGA 1 cut(s) 109
AciI CCGC 4 cut(s) 96, 297, 324, 327
AcsI RAATTY 2 cut(s) 64, 75
AcuI CTGAAG 1 cut(s) 259
AcyI GRCGYC 1 cut(s) 315
AfiI CCNNNNNNNGG 2 cut(s) 88, 333
AgeI ACCGGT 1 cut(s) 283
AgsI TTSAA 5 cut(s) 23, 47, 118, 224, 233
AluBI AGCT 1 cut(s) 147
AluI AGCT 1 cut(s) 147
Aor13HI TCCGGA 1 cut(s) 109
AoxI GGCC 1 cut(s) 190
ApeKI GCWGC 1 cut(s) 299
ApoI RAATTY 2 cut(s) 64, 75
AsiGI ACCGGT 1 cut(s) 283
Asp700I GAANNNNTTC 1 cut(s) 228
AspS9I GGNCC 2 cut(s) 92, 137
AsuC2I CCSGG 2 cut(s) 130, 202
AsuHPI GGTGA 1 cut(s) 273
AvaII GGWCC 2 cut(s) 92, 137
AxyI CCTNAGG 1 cut(s) 187
BanI GGYRCC 1 cut(s) 286
BbsI GAAGAC 1 cut(s) 221
BbvI GCAGC 1 cut(s) 286
BcnI CCSGG 2 cut(s) 130, 202
BisI GCNGC 3 cut(s) 297, 300, 327
BlsI GCNGC 3 cut(s) 298, 301, 328
Bme1390I CCNGG 2 cut(s) 130, 202
Bme18I GGWCC 2 cut(s) 92, 137
BmgT120I GGNCC 2 cut(s) 92, 137
BmiI GGNNCC 3 cut(s) 93, 94, 288
BmrFI CCNGG 2 cut(s) 130, 202
BmrI ACTGGG 1 cut(s) 231
BmuI ACTGGG 1 cut(s) 231
BpiI GAAGAC 1 cut(s) 221
BpuEI CTTGAG 1 cut(s) 104
BpuMI CCSGG 2 cut(s) 130, 202
BsaHI GRCGYC 1 cut(s) 315
BsaJI CCNNGG 2 cut(s) 129, 158
BsaWI WCCGGW 2 cut(s) 109, 283
Bsc4I CCNNNNNNNGG 2 cut(s) 88, 333
Bse118I RCCGGY 3 cut(s) 283, 289, 302
Bse1I ACTGG 2 cut(s) 237, 266
Bse21I CCTNAGG 1 cut(s) 187
BseAI TCCGGA 1 cut(s) 109
BseDI CCNNGG 2 cut(s) 129, 158
BseLI CCNNNNNNNGG 2 cut(s) 88, 333
BseMII CTCAG 1 cut(s) 201
BseNI ACTGG 2 cut(s) 237, 266
BseRI GAGGAG 1 cut(s) 175
BseXI GCAGC 1 cut(s) 286
Bsh1285I CGRYCG 1 cut(s) 294
BshFI GGCC 1 cut(s) 192
BshNI GGYRCC 1 cut(s) 286
BshTI ACCGGT 1 cut(s) 283
BsiEI CGRYCG 1 cut(s) 294
BsiSI CCGG 7 cut(s) 110, 129, 174, 201, 284, 290, 303
BslFI GGGAC 1 cut(s) 78
BslI CCNNNNNNNGG 2 cut(s) 88, 333
BsmFI GGGAC 1 cut(s) 78
BsnI GGCC 1 cut(s) 192
Bsp13I TCCGGA 1 cut(s) 109
BspACI CCGC 4 cut(s) 96, 297, 324, 327
BspANI GGCC 1 cut(s) 192
BspCNI CTCAG 1 cut(s) 200
BspEI TCCGGA 1 cut(s) 109
BspLI GGNNCC 3 cut(s) 93, 94, 288
BspT107I GGYRCC 1 cut(s) 286
BsrFI RCCGGY 3 cut(s) 283, 289, 302
BsrI ACTGG 2 cut(s) 237, 266
BssAI RCCGGY 3 cut(s) 283, 289, 302
BssECI CCNNGG 2 cut(s) 129, 158
BssNI GRCGYC 1 cut(s) 315
BstACI GRCGYC 1 cut(s) 315
BstC8I GCNNGC 1 cut(s) 207
BstDEI CTNAG 1 cut(s) 187
BstDSI CCRYGG 1 cut(s) 158
BstEII GGTNACC 1 cut(s) 279
BstMCI CGRYCG 1 cut(s) 294
BstPI GGTNACC 1 cut(s) 279
BstSCI CCNGG 2 cut(s) 128, 200
BstV1I GCAGC 1 cut(s) 286
BstV2I GAAGAC 1 cut(s) 221
BstXI CCANNNNNNTGG 1 cut(s) 68
Bsu36I CCTNAGG 1 cut(s) 187
BsuRI GGCC 1 cut(s) 192
BtgI CCRYGG 1 cut(s) 158
Cac8I GCNNGC 1 cut(s) 207
Cfr10I RCCGGY 3 cut(s) 283, 289, 302
Cfr13I GGNCC 2 cut(s) 92, 137
CspAI ACCGGT 1 cut(s) 283
CviAII CATG 1 cut(s) 346
CviJI RGCY 4 cut(s) 147, 192, 209, 243
CviKI_1 RGCY 4 cut(s) 147, 192, 209, 243
DdeI CTNAG 1 cut(s) 187
Eco47I GGWCC 2 cut(s) 92, 137
Eco57I CTGAAG 1 cut(s) 259
Eco81I CCTNAGG 1 cut(s) 187
Eco91I GGTNACC 1 cut(s) 279
EcoO109I RGGNCCY 2 cut(s) 92, 137
EcoO65I GGTNACC 1 cut(s) 279
FaeI CATG 1 cut(s) 349
FaiI YATR 5 cut(s) 14, 58, 214, 216, 347
FaqI GGGAC 1 cut(s) 78
FatI CATG 1 cut(s) 345
FauI CCCGC 1 cut(s) 103
FblI GTMKAC 1 cut(s) 312
Fnu4HI GCNGC 3 cut(s) 297, 300, 327
Fsp4HI GCNGC 3 cut(s) 297, 300, 327
GluI GCNGC 3 cut(s) 297, 300, 327
HaeIII GGCC 1 cut(s) 192
HapII CCGG 7 cut(s) 110, 129, 174, 201, 284, 290, 303
Hin1I GRCGYC 1 cut(s) 315
Hin1II CATG 1 cut(s) 349
HinfI GANTC 2 cut(s) 4, 258
HpaII CCGG 7 cut(s) 110, 129, 174, 201, 284, 290, 303
HphI GGTGA 1 cut(s) 273
Hpy166II GTNNAC 1 cut(s) 313
Hpy188III TCNNGA 2 cut(s) 110, 140
Hpy8I GTNNAC 1 cut(s) 313
Hpy99I CGWCG 1 cut(s) 173
HpyAV CCTTC 1 cut(s) 218
HpyCH4IV ACGT 1 cut(s) 315
HpyF3I CTNAG 1 cut(s) 187
HpySE526I ACGT 1 cut(s) 315
Hsp92I GRCGYC 1 cut(s) 315
Hsp92II CATG 1 cut(s) 349
KflI GGGWCCC 1 cut(s) 92
Kpn2I TCCGGA 1 cut(s) 109
Lsp1109I GCAGC 1 cut(s) 286
MaeII ACGT 1 cut(s) 315
MaeIII GTNAC 2 cut(s) 34, 279
MboII GAAGA 1 cut(s) 221
MluCI AATT 2 cut(s) 64, 75
MlyI GAGTC 1 cut(s) 252
MnlI CCTC 3 cut(s) 79, 193, 196
MroI TCCGGA 1 cut(s) 109
MroXI GAANNNNTTC 1 cut(s) 228
MspA1I CMGCKG 2 cut(s) 299, 329
MspI CCGG 7 cut(s) 110, 129, 174, 201, 284, 290, 303
MspR9I CCNGG 2 cut(s) 130, 202
NciI CCSGG 2 cut(s) 130, 202
NlaIII CATG 1 cut(s) 349
NlaIV GGNNCC 3 cut(s) 93, 94, 288
NmuCI GTSAC 1 cut(s) 279
PdmI GAANNNNTTC 1 cut(s) 228
PinAI ACCGGT 1 cut(s) 283
PkrI GCNGC 3 cut(s) 298, 301, 328
PleI GAGTC 1 cut(s) 252
PpsI GAGTC 1 cut(s) 252
PpuMI RGGWCCY 2 cut(s) 92, 137
Psp5II RGGWCCY 2 cut(s) 92, 137
PspEI GGTNACC 1 cut(s) 279
PspN4I GGNNCC 3 cut(s) 93, 94, 288
PspPI GGNCC 2 cut(s) 92, 137
PspPPI RGGWCCY 2 cut(s) 92, 137
SatI GCNGC 3 cut(s) 297, 300, 327
Sau96I GGNCC 2 cut(s) 92, 137
SchI GAGTC 1 cut(s) 252
ScrFI CCNGG 2 cut(s) 130, 202
SetI ASST 8 cut(s) 13, 31, 90, 139, 149, 229, 281, 318
SgrAI CRCCGGYG 1 cut(s) 283
SinI GGWCC 2 cut(s) 92, 137
SmlI CTYRAG 1 cut(s) 83
SmoI CTYRAG 1 cut(s) 83
Sse9I AATT 2 cut(s) 64, 75
SsiI CCGC 4 cut(s) 96, 297, 324, 327
StyD4I CCNGG 2 cut(s) 128, 200
TaiI ACGT 1 cut(s) 318
TasI AATT 2 cut(s) 64, 75
TauI GCSGC 2 cut(s) 299, 329
TseFI GTSAC 1 cut(s) 279
TseI GCWGC 1 cut(s) 299
Tsp45I GTSAC 1 cut(s) 279
TspDTI ATGAA 1 cut(s) 334
TspGWI ACGGA 2 cut(s) 147, 157
VpaK11BI GGWCC 2 cut(s) 92, 137
XapI RAATTY 2 cut(s) 64, 75
XmiI GTMKAC 1 cut(s) 312
XmnI GAANNNNTTC 1 cut(s) 228
ZraI GACGTC 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.