FvH4_1g22590

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0008656
Physical Location & Seq
Reverse (-)
14531510 .. 14534545
3036 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g22590.t1

Sequence Viewer

Length: 309 bp
ATGGATGATCGTAAGGAGAAAAATGCGCCATGGTTATCAGTGCCACAATTTGGGGACTGGGATCAGAAGGGCGGCCAAGTGCCAGATTACTCCCTTGATTTCTCCAAGATAAGGGAAATGAGGAAGCAAAACAAGAGAGATGTGTCCAGAGCCAGTCTTGGAAATGAAGAAGAGCTCATTGCTTCAAACACTACTAATGTGGGTGCTGCCCACAATGACATTCACCACCCTCATTACCATCAGAGCACCCACTCTCCAACTGCTCGACGTAGCATATTCAGCTACTTCAACTGTTGCGTGAAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AvrRpt-cleavage

Protein Analysis

103

Amino Acids

11.7

Weight (kDa)

7.85

Isoelectric Point (pI)

49.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AvrRpt-cleavage PF05627 11 - 42 8.3e-09 Cleavage site for pathogenic type III effector avirulence factor Avr
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 50
AciI CCGC 1 cut(s) 72
AclWI GGATC 1 cut(s) 69
AcoI YGGCCR 1 cut(s) 73
AfiI CCNNNNNNNGG 2 cut(s) 50, 111
AgsI TTSAA 2 cut(s) 186, 289
AluBI AGCT 3 cut(s) 175, 282, 305
AluI AGCT 3 cut(s) 175, 282, 305
Alw21I GWGCWC 2 cut(s) 177, 248
AlwI GGATC 1 cut(s) 69
AoxI GGCC 1 cut(s) 73
ApeKI GCWGC 1 cut(s) 206
AspLEI GCGC 1 cut(s) 28
AsuHPI GGTGA 1 cut(s) 215
BanII GRGCYC 1 cut(s) 177
Bbv12I GWGCWC 2 cut(s) 177, 248
BbvI GCAGC 1 cut(s) 193
BccI CCATC 1 cut(s) 246
BisI GCNGC 2 cut(s) 73, 207
BlsI GCNGC 2 cut(s) 74, 208
BmrI ACTGGG 1 cut(s) 67
BmuI ACTGGG 1 cut(s) 67
BsaJI CCNNGG 1 cut(s) 29
BsaXI ACNNNNNCTCC 2 cut(s) 238, 268
Bsc4I CCNNNNNNNGG 2 cut(s) 50, 111
Bse1I ACTGG 2 cut(s) 62, 153
Bse3DI GCAATG 1 cut(s) 177
BseDI CCNNGG 1 cut(s) 29
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 2 cut(s) 50, 111
BseMI GCAATG 1 cut(s) 177
BseNI ACTGG 2 cut(s) 62, 153
BseXI GCAGC 1 cut(s) 193
BshFI GGCC 1 cut(s) 75
BsiHKAI GWGCWC 2 cut(s) 177, 248
BslFI GGGAC 1 cut(s) 68
BslI CCNNNNNNNGG 2 cut(s) 50, 111
BsmFI GGGAC 1 cut(s) 68
BsnI GGCC 1 cut(s) 75
Bsp1286I GDGCHC 2 cut(s) 177, 248
Bsp143I GATC 2 cut(s) 7, 61
Bsp19I CCATGG 1 cut(s) 29
BspACI CCGC 1 cut(s) 72
BspANI GGCC 1 cut(s) 75
BspPI GGATC 1 cut(s) 69
BspQI GCTCTTC 1 cut(s) 165
BsrDI GCAATG 1 cut(s) 177
BsrI ACTGG 2 cut(s) 62, 153
BssECI CCNNGG 1 cut(s) 29
BssMI GATC 2 cut(s) 7, 61
BssT1I CCWWGG 1 cut(s) 29
Bst4CI ACNGT 1 cut(s) 293
Bst6I CTCTTC 1 cut(s) 165
BstDSI CCRYGG 1 cut(s) 29
BstF5I GGATG 1 cut(s) 10
BstHHI GCGC 1 cut(s) 28
BstKTI GATC 2 cut(s) 10, 64
BstMBI GATC 2 cut(s) 7, 61
BstMWI GCNNNNNNNGC 1 cut(s) 279
BstV1I GCAGC 1 cut(s) 193
BsuRI GGCC 1 cut(s) 75
BtgI CCRYGG 1 cut(s) 29
BtsCI GGATG 1 cut(s) 10
BtsIMutI CAGTG 1 cut(s) 45
CfoI GCGC 1 cut(s) 28
CviAII CATG 1 cut(s) 30
CviJI RGCY 5 cut(s) 75, 152, 175, 282, 305
CviKI_1 RGCY 5 cut(s) 75, 152, 175, 282, 305
DpnI GATC 2 cut(s) 9, 63
DpnII GATC 2 cut(s) 7, 61
EaeI YGGCCR 1 cut(s) 73
Eam1104I CTCTTC 1 cut(s) 165
EarI CTCTTC 1 cut(s) 165
Ecl136II GAGCTC 1 cut(s) 175
Eco130I CCWWGG 1 cut(s) 29
Eco24I GRGCYC 1 cut(s) 177
Eco53kI GAGCTC 1 cut(s) 175
EcoICRI GAGCTC 1 cut(s) 175
EcoT14I CCWWGG 1 cut(s) 29
EcoT38I GRGCYC 1 cut(s) 177
ErhI CCWWGG 1 cut(s) 29
FaeI CATG 1 cut(s) 33
FaiI YATR 2 cut(s) 31, 275
FaqI GGGAC 1 cut(s) 68
FatI CATG 1 cut(s) 29
Fnu4HI GCNGC 2 cut(s) 73, 207
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 1 cut(s) 177
Fsp4HI GCNGC 2 cut(s) 73, 207
GlaI GCGC 1 cut(s) 27
GluI GCNGC 2 cut(s) 73, 207
HaeIII GGCC 1 cut(s) 75
HhaI GCGC 1 cut(s) 28
Hin1II CATG 1 cut(s) 33
Hin6I GCGC 1 cut(s) 26
HinP1I GCGC 1 cut(s) 26
HindIII AAGCTT 1 cut(s) 303
HphI GGTGA 1 cut(s) 215
Hpy188I TCNGA 2 cut(s) 66, 243
Hpy188III TCNNGA 1 cut(s) 147
Hpy99I CGWCG 1 cut(s) 270
HpyAV CCTTC 1 cut(s) 61
HpyCH4III ACNGT 1 cut(s) 293
HpyCH4IV ACGT 1 cut(s) 268
HpyF10VI GCNNNNNNNGC 1 cut(s) 279
HpySE526I ACGT 1 cut(s) 268
Hsp92II CATG 1 cut(s) 33
HspAI GCGC 1 cut(s) 26
Kzo9I GATC 2 cut(s) 7, 61
LguI GCTCTTC 1 cut(s) 165
LpnPI CCDG 4 cut(s) 43, 96, 160, 166
Lsp1109I GCAGC 1 cut(s) 193
MaeII ACGT 1 cut(s) 268
MalI GATC 2 cut(s) 9, 63
MboI GATC 2 cut(s) 7, 61
MboII GAAGA 2 cut(s) 179, 182
MhlI GDGCHC 2 cut(s) 177, 248
MluCI AATT 1 cut(s) 47
MmeI TCCRAC 1 cut(s) 281
MnlI CCTC 2 cut(s) 114, 240
MwoI GCNNNNNNNGC 1 cut(s) 279
NcoI CCATGG 1 cut(s) 29
NdeII GATC 2 cut(s) 7, 61
NlaIII CATG 1 cut(s) 33
PciSI GCTCTTC 1 cut(s) 165
PflMI CCANNNNNTGG 1 cut(s) 50
PkrI GCNGC 2 cut(s) 74, 208
Psp124BI GAGCTC 1 cut(s) 177
SacI GAGCTC 1 cut(s) 177
SapI GCTCTTC 1 cut(s) 165
SatI GCNGC 2 cut(s) 73, 207
Sau3AI GATC 2 cut(s) 7, 61
SduI GDGCHC 2 cut(s) 177, 248
SetI ASST 4 cut(s) 177, 271, 284, 307
Sse9I AATT 1 cut(s) 47
SsiI CCGC 1 cut(s) 72
SstI GAGCTC 1 cut(s) 177
StyI CCWWGG 1 cut(s) 29
TaaI ACNGT 1 cut(s) 293
TaiI ACGT 1 cut(s) 271
TaqI TCGA 1 cut(s) 265
TasI AATT 1 cut(s) 47
TauI GCSGC 1 cut(s) 75
TscAI CASTG 1 cut(s) 45
TseI GCWGC 1 cut(s) 206
TspDTI ATGAA 1 cut(s) 180
TspRI CASTG 1 cut(s) 45
Van91I CCANNNNNTGG 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.