MD15G1332200.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0008656
Physical Location & Seq
Forward (+)
36844409 .. 36848082
3674 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1332200.v1.1.491

Sequence Viewer

Length: 297 bp
ATGGAGGATCGAAAGGAGAAAAATGCGCCATGGTTGTCAGTGCCGCAATTCGGGGACTGGGATCAGAAGGGGCAAGTGCCAGACTATTCTCTTGATTTCTCAAAAATAAGGGAAATGAGGAAGCAAAACAAGAGGGATGTTTCCAGAGCCAGTCTTGGAAATGAAGAAGAACTCGTTGCCTCAAACACTGCTAATGCGGGTGCTGTTCACAATGAACCCCATTACCATCAGACCTCCCACTCTCCAACTACTCGACGGAGCATTTTCAGCTACTTCAACTGTTGTGTGAAGGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AvrRpt-cleavage

Protein Analysis

99

Amino Acids

11.26

Weight (kDa)

7.82

Isoelectric Point (pI)

51.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AvrRpt-cleavage PF05627 11 - 41 1.2e-08 Cleavage site for pathogenic type III effector avirulence factor Avr
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 44, 197
AclWI GGATC 2 cut(s) 15, 69
AfiI CCNNNNNNNGG 1 cut(s) 50
AgsI TTSAA 1 cut(s) 277
AluBI AGCT 1 cut(s) 270
AluI AGCT 1 cut(s) 270
AlwI GGATC 2 cut(s) 15, 69
AspLEI GCGC 1 cut(s) 28
BccI CCATC 1 cut(s) 234
BisI GCNGC 1 cut(s) 44
BlsI GCNGC 1 cut(s) 45
BmrI ACTGGG 1 cut(s) 67
BmuI ACTGGG 1 cut(s) 67
BsaJI CCNNGG 1 cut(s) 29
Bsc4I CCNNNNNNNGG 1 cut(s) 50
Bse1I ACTGG 2 cut(s) 62, 150
BseDI CCNNGG 1 cut(s) 29
BseGI GGATG 1 cut(s) 142
BseLI CCNNNNNNNGG 1 cut(s) 50
BseNI ACTGG 2 cut(s) 62, 150
BslFI GGGAC 1 cut(s) 68
BslI CCNNNNNNNGG 1 cut(s) 50
BsmFI GGGAC 1 cut(s) 68
Bsp143I GATC 2 cut(s) 7, 61
Bsp19I CCATGG 1 cut(s) 29
BspACI CCGC 2 cut(s) 44, 197
BspPI GGATC 2 cut(s) 15, 69
BsrI ACTGG 2 cut(s) 62, 150
BssECI CCNNGG 1 cut(s) 29
BssMI GATC 2 cut(s) 7, 61
BssT1I CCWWGG 1 cut(s) 29
Bst4CI ACNGT 1 cut(s) 281
BstDSI CCRYGG 1 cut(s) 29
BstF5I GGATG 1 cut(s) 142
BstHHI GCGC 1 cut(s) 28
BstKTI GATC 2 cut(s) 10, 64
BstMBI GATC 2 cut(s) 7, 61
BstMWI GCNNNNNNNGC 1 cut(s) 267
BtgI CCRYGG 1 cut(s) 29
BtsCI GGATG 1 cut(s) 142
BtsI GCAGTG 1 cut(s) 186
BtsIMutI CAGTG 2 cut(s) 45, 186
CfoI GCGC 1 cut(s) 28
CviAII CATG 1 cut(s) 30
CviJI RGCY 3 cut(s) 149, 270, 294
CviKI_1 RGCY 3 cut(s) 149, 270, 294
DpnI GATC 2 cut(s) 9, 63
DpnII GATC 2 cut(s) 7, 61
Eco130I CCWWGG 1 cut(s) 29
EcoT14I CCWWGG 1 cut(s) 29
ErhI CCWWGG 1 cut(s) 29
FaeI CATG 1 cut(s) 33
FaiI YATR 1 cut(s) 31
FaqI GGGAC 1 cut(s) 68
FatI CATG 1 cut(s) 29
FauI CCCGC 1 cut(s) 190
Fnu4HI GCNGC 1 cut(s) 44
FokI GGATG 1 cut(s) 149
Fsp4HI GCNGC 1 cut(s) 44
GlaI GCGC 1 cut(s) 27
GluI GCNGC 1 cut(s) 44
HhaI GCGC 1 cut(s) 28
Hin1II CATG 1 cut(s) 33
Hin6I GCGC 1 cut(s) 26
HinP1I GCGC 1 cut(s) 26
Hpy166II GTNNAC 1 cut(s) 208
Hpy188I TCNGA 2 cut(s) 66, 231
Hpy188III TCNNGA 2 cut(s) 92, 144
Hpy8I GTNNAC 1 cut(s) 208
Hpy99I CGWCG 1 cut(s) 258
HpyAV CCTTC 2 cut(s) 61, 283
HpyCH4III ACNGT 1 cut(s) 281
HpyF10VI GCNNNNNNNGC 1 cut(s) 267
Hsp92II CATG 1 cut(s) 33
HspAI GCGC 1 cut(s) 26
Kzo9I GATC 2 cut(s) 7, 61
LmnI GCTCC 1 cut(s) 258
LpnPI CCDG 4 cut(s) 43, 93, 157, 163
MalI GATC 2 cut(s) 9, 63
MboI GATC 2 cut(s) 7, 61
MboII GAAGA 2 cut(s) 176, 179
MluCI AATT 1 cut(s) 47
MmeI TCCRAC 1 cut(s) 269
MnlI CCTC 4 cut(s) 111, 126, 190, 244
MwoI GCNNNNNNNGC 1 cut(s) 267
NcoI CCATGG 1 cut(s) 29
NdeII GATC 2 cut(s) 7, 61
NlaIII CATG 1 cut(s) 33
PkrI GCNGC 1 cut(s) 45
SatI GCNGC 1 cut(s) 44
Sau3AI GATC 2 cut(s) 7, 61
SetI ASST 2 cut(s) 236, 272
Sse9I AATT 1 cut(s) 47
SsiI CCGC 2 cut(s) 44, 197
StyI CCWWGG 1 cut(s) 29
TaaI ACNGT 1 cut(s) 281
TaqI TCGA 2 cut(s) 10, 253
TasI AATT 1 cut(s) 47
TauI GCSGC 1 cut(s) 46
TscAI CASTG 2 cut(s) 45, 193
TspDTI ATGAA 2 cut(s) 177, 228
TspGWI ACGGA 1 cut(s) 271
TspRI CASTG 2 cut(s) 45, 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.