Rmu_sc0004191.1_g000009

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004191.1
OG0008656
Physical Location & Seq
Forward (+)
29628 .. 32711
3084 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004191.1_g000009.1.cds

Sequence Viewer

Length: 309 bp
atggatgatcgaaaggagaaaaatgccccatggttatcagtgccacaatttggggactgggatcagaagggcggccaagtgccagactactcccttgatttctccaagatcagggaaatgaggaagcaaaacaagagagacgtgtccagagcaagtcttggaaatgaagaagagctcattgtctcaaacactgccaatgtgggtgctgcccacaatgacattcaccaccctcattaccatcagagcacccactccccaactgctagacgaagcatattcagctacttcaactgttgcataaaagcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AvrRpt-cleavage

Protein Analysis

102

Amino Acids

11.71

Weight (kDa)

7.85

Isoelectric Point (pI)

50.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 50
AciI CCGC 1 cut(s) 72
AclWI GGATC 1 cut(s) 69
AcoI YGGCCR 1 cut(s) 73
AfiI CCNNNNNNNGG 2 cut(s) 50, 111
AflIII ACRYGT 1 cut(s) 141
AgsI TTSAA 1 cut(s) 289
AjiI CACGTC 1 cut(s) 142
AluBI AGCT 3 cut(s) 175, 282, 305
AluI AGCT 3 cut(s) 175, 282, 305
Alw21I GWGCWC 2 cut(s) 177, 248
Alw26I GTCTC 2 cut(s) 132, 187
AlwI GGATC 1 cut(s) 69
AoxI GGCC 1 cut(s) 73
ApeKI GCWGC 1 cut(s) 206
AsuHPI GGTGA 1 cut(s) 215
BanII GRGCYC 1 cut(s) 177
Bbv12I GWGCWC 2 cut(s) 177, 248
BbvI GCAGC 1 cut(s) 193
BccI CCATC 1 cut(s) 246
BcoDI GTCTC 2 cut(s) 132, 187
BfaI CTAG 1 cut(s) 264
BisI GCNGC 2 cut(s) 73, 207
BlsI GCNGC 2 cut(s) 74, 208
BmgBI CACGTC 1 cut(s) 142
BmrI ACTGGG 1 cut(s) 67
BmuI ACTGGG 1 cut(s) 67
BsaJI CCNNGG 1 cut(s) 29
Bsc4I CCNNNNNNNGG 2 cut(s) 50, 111
Bse1I ACTGG 1 cut(s) 62
BseDI CCNNGG 1 cut(s) 29
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 2 cut(s) 50, 111
BseNI ACTGG 1 cut(s) 62
BseXI GCAGC 1 cut(s) 193
BshFI GGCC 1 cut(s) 75
BsiHKAI GWGCWC 2 cut(s) 177, 248
BslFI GGGAC 1 cut(s) 68
BslI CCNNNNNNNGG 2 cut(s) 50, 111
BsmAI GTCTC 2 cut(s) 132, 187
BsmBI CGTCTC 1 cut(s) 132
BsmFI GGGAC 1 cut(s) 68
BsnI GGCC 1 cut(s) 75
Bsp1286I GDGCHC 2 cut(s) 177, 248
Bsp143I GATC 3 cut(s) 7, 61, 108
Bsp19I CCATGG 1 cut(s) 29
BspACI CCGC 1 cut(s) 72
BspANI GGCC 1 cut(s) 75
BspPI GGATC 1 cut(s) 69
BspQI GCTCTTC 1 cut(s) 165
BsrI ACTGG 1 cut(s) 62
BssECI CCNNGG 1 cut(s) 29
BssMI GATC 3 cut(s) 7, 61, 108
BssT1I CCWWGG 1 cut(s) 29
Bst4CI ACNGT 1 cut(s) 293
Bst6I CTCTTC 1 cut(s) 165
BstDSI CCRYGG 1 cut(s) 29
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 3 cut(s) 10, 64, 111
BstMAI GTCTC 2 cut(s) 132, 187
BstMBI GATC 3 cut(s) 7, 61, 108
BstMWI GCNNNNNNNGC 1 cut(s) 279
BstV1I GCAGC 1 cut(s) 193
BsuRI GGCC 1 cut(s) 75
BtgI CCRYGG 1 cut(s) 29
BtrI CACGTC 1 cut(s) 142
BtsCI GGATG 1 cut(s) 10
BtsI GCAGTG 1 cut(s) 189
BtsIMutI CAGTG 2 cut(s) 45, 189
CviAII CATG 1 cut(s) 30
CviJI RGCY 4 cut(s) 75, 175, 282, 305
CviKI_1 RGCY 4 cut(s) 75, 175, 282, 305
DpnI GATC 3 cut(s) 9, 63, 110
DpnII GATC 3 cut(s) 7, 61, 108
EaeI YGGCCR 1 cut(s) 73
Eam1104I CTCTTC 1 cut(s) 165
EarI CTCTTC 1 cut(s) 165
Ecl136II GAGCTC 1 cut(s) 175
Eco130I CCWWGG 1 cut(s) 29
Eco24I GRGCYC 1 cut(s) 177
Eco53kI GAGCTC 1 cut(s) 175
EcoICRI GAGCTC 1 cut(s) 175
EcoT14I CCWWGG 1 cut(s) 29
EcoT38I GRGCYC 1 cut(s) 177
ErhI CCWWGG 1 cut(s) 29
Esp3I CGTCTC 1 cut(s) 132
FaeI CATG 1 cut(s) 33
FaiI YATR 3 cut(s) 31, 275, 299
FaqI GGGAC 1 cut(s) 68
FatI CATG 1 cut(s) 29
Fnu4HI GCNGC 2 cut(s) 73, 207
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 1 cut(s) 177
Fsp4HI GCNGC 2 cut(s) 73, 207
FspBI CTAG 1 cut(s) 264
GluI GCNGC 2 cut(s) 73, 207
HaeIII GGCC 1 cut(s) 75
Hin1II CATG 1 cut(s) 33
HindIII AAGCTT 1 cut(s) 303
HphI GGTGA 1 cut(s) 215
Hpy188I TCNGA 2 cut(s) 66, 243
Hpy188III TCNNGA 1 cut(s) 147
HpyAV CCTTC 1 cut(s) 61
HpyCH4III ACNGT 1 cut(s) 293
HpyCH4IV ACGT 1 cut(s) 141
HpyCH4V TGCA 1 cut(s) 297
HpyF10VI GCNNNNNNNGC 1 cut(s) 279
HpySE526I ACGT 1 cut(s) 141
Hsp92II CATG 1 cut(s) 33
Kzo9I GATC 3 cut(s) 7, 61, 108
LguI GCTCTTC 1 cut(s) 165
LpnPI CCDG 4 cut(s) 43, 96, 97, 160
Lsp1109I GCAGC 1 cut(s) 193
MaeI CTAG 1 cut(s) 264
MaeII ACGT 1 cut(s) 141
MalI GATC 3 cut(s) 9, 63, 110
MboI GATC 3 cut(s) 7, 61, 108
MboII GAAGA 2 cut(s) 179, 182
MhlI GDGCHC 2 cut(s) 177, 248
MluCI AATT 1 cut(s) 47
MnlI CCTC 2 cut(s) 114, 240
MwoI GCNNNNNNNGC 1 cut(s) 279
NcoI CCATGG 1 cut(s) 29
NdeII GATC 3 cut(s) 7, 61, 108
NlaIII CATG 1 cut(s) 33
PciSI GCTCTTC 1 cut(s) 165
PflMI CCANNNNNTGG 1 cut(s) 50
PkrI GCNGC 2 cut(s) 74, 208
Psp124BI GAGCTC 1 cut(s) 177
SacI GAGCTC 1 cut(s) 177
SapI GCTCTTC 1 cut(s) 165
SatI GCNGC 2 cut(s) 73, 207
Sau3AI GATC 3 cut(s) 7, 61, 108
SduI GDGCHC 2 cut(s) 177, 248
SetI ASST 4 cut(s) 144, 177, 284, 307
Sse9I AATT 1 cut(s) 47
SsiI CCGC 1 cut(s) 72
SspMI CTAG 1 cut(s) 264
SstI GAGCTC 1 cut(s) 177
StyI CCWWGG 1 cut(s) 29
TaaI ACNGT 1 cut(s) 293
TaiI ACGT 1 cut(s) 144
TaqI TCGA 1 cut(s) 10
TasI AATT 1 cut(s) 47
TauI GCSGC 1 cut(s) 75
TscAI CASTG 2 cut(s) 45, 196
TseI GCWGC 1 cut(s) 206
TspDTI ATGAA 1 cut(s) 180
TspRI CASTG 2 cut(s) 45, 196
Van91I CCANNNNNTGG 1 cut(s) 50
XspI CTAG 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.