Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0016739

Physical Location & Seq

Genomic Coordinates Reverse (-)

16295000 .. 16296313

Gene Structure 1314 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g24450.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGAACATACCTGAGCTGTTTATATGCCCAATTAGTCTGGAGCTGTTCAAAGATCCTGTGACTCTATGCACAGGCCTAACCTATGACAGGTCGAGCATTCAAAAATGGCTTGCCGCTGGTAATCTGACATGTCCAGTCACAATGCAGAAGCTTGACGATCCAATCACCATGGTTCCTAACCACACTCTTCGCCATTTGATCACTCAGTGGCTGCAAATGGGTACTCAAACTGAAAACTCAAATCATTCTGACGATCATTGTGTTCTAGAAACAGCAACTATTGATTCTTTAGCTTCTGTCAAACACGTACTCAAGTCTAATGAGTTTGGCTTCAAGAGCAAGGTTCTAGCACTCGAAAAGATTACATCTTCACCGTCCACAGATTACTTGCTCCTGCAGTTGGGGTACTTGCCTTTGTTACTTGAACTTGTCTTTGGACTAGTTCCAGAAGCCAGAGTACTACTCATCAGTGAAGAGCACTACTGCATCAAGTTTGTCGAGCTTGCGCTTTCTTGTGTTCTGATGCTGCTGCCTCTAGGGGTTGAATTAGAGTCCCTAAATATGCTGAAAGAAGAGAGAAAGTTGTCATCGTTTGAAGTCTTGTTGGCCTGCGGCTCTGCATTCATTAGAATCAACTTGTGCCGCCTCATAGAGGCAGTTTCGGCATCAGATAGCAGCAGCAGCAGCAGCATCAGCAGAAGAAAAAGGCTGTGTATTGTGCTTGGAAAGCACCGGGGGATCTTGAATCAGCTGGTTCAGCTAATTCTACACCCGAATGATTCGGAGGAGGAGGCTGCAGATGCTGCAATCAGAGCCTTATCATCATTGTCTTCCTTTGAAGAGAACATAGAGTCTTTGGTCAGAAATGGCATGGTAAATGGACTAGTGACATACATTACTAGAACCGTAAAGCACGAAAGAAGCCTAGCGCCATTGGCAACGGCGATAATTGAGAGGCTTTTAGGAGTAGAGAGTGCAAGAGAGGAATTGCTTAATAGTAATAGCAATAATGGCACAAGTGGCAATGGCATTCATGCTCTTGTCAAAATGGTTTTCAGGGTATCGTGGTCCGATGTTGATGATGATCATGAGCACCATCGAGGGAGTGAAAGTGCCGTCTCCTCACTTTTGATTGTCTGCAATGATTCTGTATTGGCACGAGAGGAAGCCATTAGCGTCGGTGTGCTGACTCAGTTACTGTTACTCATGCAGAGCCAGTGCAGCAGTAGCACCAAAGCAAAAGCAAGAAAGTTGCTCAAACTCCTTAGAACCAAGTGGTCTCAGGACTCAAAGCAATTCATCTCAATGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009814 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0098542 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

U-box

Protein Analysis

438

Amino Acids

48.35

Weight (kDa)

6.03

Isoelectric Point (pI)

44.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
U-box	PF04564	3 - 72	1.2e-17	U-box domain
ARM_PUB	PF25598	163 - 430	2.7e-23	Plant U-box protein ARM repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016739)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g24450
malus_domestica	MD01G1005300.v1.1
prunus_persica	Prupe.4G271800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0121551
rosa_laevigata	RLG00000018625
rosa_multiflora	Rmu_sc0000315.1_g000027 Rmu_sc0007658.1_g000009
rosa_roxburghii	Rroxscaffold_2G00122360
rosa_rugosa	Rorug02G0233700
rosa_samantha	Rh2AG290500 Rh2BG301300 Rh2CG280000 Rh2DG315200
rosa_wichuraiana	Rw2G023300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	114, 612, 643
AclWI	GGATC	3 cut(s)	47, 152, 746
AdeI	CACNNNGTG	1 cut(s)	207
AfaI	GTAC	4 cut(s)	223, 309, 407, 459
AfiI	CCNNNNNNNGG	3 cut(s)	87, 400, 652
AflIII	ACRYGT	2 cut(s)	128, 304
AgsI	TTSAA	8 cut(s)	49, 101, 334, 425, 545, 596, 745, 839
AhlI	ACTAGT	2 cut(s)	439, 883
AjuI	GAANNNNNNNTTGG	2 cut(s)	417, 449
AluBI	AGCT	7 cut(s)	16, 43, 151, 293, 502, 751, 760
AluI	AGCT	7 cut(s)	16, 43, 151, 293, 502, 751, 760
Alw21I	GWGCWC	2 cut(s)	480, 1095
Alw26I	GTCTC	2 cut(s)	1123, 1284
AlwI	GGATC	3 cut(s)	47, 152, 746
AlwNI	CAGNNNCTG	3 cut(s)	211, 803, 1198
AoxI	GGCC	2 cut(s)	73, 606
AspLEI	GCGC	2 cut(s)	508, 931
AspS9I	GGNCC	1 cut(s)	1068
AsuC2I	CCSGG	1 cut(s)	734
AsuHPI	GGTGA	2 cut(s)	157, 363
AvaII	GGWCC	1 cut(s)	1068
BarI	GAAGNNNNNNTAC	2 cut(s)	441, 473
BauI	CACGAG	1 cut(s)	1158
BbsI	GAAGAC	1 cut(s)	822
Bbv12I	GWGCWC	2 cut(s)	480, 1095
BccI	CCATC	1 cut(s)	1104
BceAI	ACGGC	2 cut(s)	957, 1100
BclI	TGATCA	2 cut(s)	198, 1084
BcnI	CCSGG	1 cut(s)	734
BcoDI	GTCTC	2 cut(s)	1123, 1284
BcuI	ACTAGT	2 cut(s)	439, 883
BfaI	CTAG	7 cut(s)	266, 347, 440, 536, 884, 900, 926
BfmI	CTRYAG	2 cut(s)	395, 795
BfoI	RGCGCY	1 cut(s)	932
BmcAI	AGTACT	1 cut(s)	459
Bme1390I	CCNGG	1 cut(s)	734
Bme18I	GGWCC	1 cut(s)	1068
BmgT120I	GGNCC	1 cut(s)	1068
BmiI	GGNNCC	1 cut(s)	174
BmrFI	CCNGG	1 cut(s)	734
BmsI	GCATC	5 cut(s)	495, 513, 674, 699, 790
BpiI	GAAGAC	1 cut(s)	822
BplI	GAGNNNNNCTC	2 cut(s)	447, 479
BpmI	CTGGAG	1 cut(s)	59
Bpu10I	CCTNAGC	1 cut(s)	12
BpuEI	CTTGAG	1 cut(s)	296
BpuMI	CCSGG	1 cut(s)	734
BsaAI	YACGTR	1 cut(s)	307
BsaBI	GATNNNNATC	1 cut(s)	1083
BsaI	GGTCTC	1 cut(s)	1284
BsaJI	CCNNGG	2 cut(s)	168, 733
BsaXI	ACNNNNNCTCC	2 cut(s)	1096, 1126
Bsc4I	CCNNNNNNNGG	3 cut(s)	87, 400, 652
Bse1I	ACTGG	2 cut(s)	134, 1216
Bse3DI	GCAATG	2 cut(s)	1030, 1147
Bse8I	GATNNNNATC	1 cut(s)	1083
BseDI	CCNNGG	2 cut(s)	168, 733
BseJI	GATNNNNATC	1 cut(s)	1083
BseLI	CCNNNNNNNGG	3 cut(s)	87, 400, 652
BseMI	GCAATG	2 cut(s)	1030, 1147
BseMII	CTCAG	3 cut(s)	218, 1205, 1295
BseNI	ACTGG	2 cut(s)	134, 1216
BseRI	GAGGAG	3 cut(s)	800, 803, 1111
BsgI	GTGCAG	1 cut(s)	1240
BshFI	GGCC	2 cut(s)	75, 608
BsiHKAI	GWGCWC	2 cut(s)	480, 1095
BsiSI	CCGG	1 cut(s)	733
BslFI	GGGAC	1 cut(s)	538
BslI	CCNNNNNNNGG	3 cut(s)	87, 400, 652
BsmAI	GTCTC	2 cut(s)	1123, 1284
BsmBI	CGTCTC	1 cut(s)	1123
BsmFI	GGGAC	1 cut(s)	538
BsmI	GAATGC	3 cut(s)	96, 620, 1029
BsnI	GGCC	2 cut(s)	75, 608
Bso31I	GGTCTC	1 cut(s)	1284
Bsp1286I	GDGCHC	2 cut(s)	480, 1095
Bsp143I	GATC	6 cut(s)	52, 157, 198, 253, 738, 1084
Bsp19I	CCATGG	1 cut(s)	168
BspACI	CCGC	3 cut(s)	114, 612, 643
BspANI	GGCC	2 cut(s)	75, 608
BspCNI	CTCAG	4 cut(s)	4, 217, 1204, 1294
BspHI	TCATGA	1 cut(s)	1087
BspLI	GGNNCC	1 cut(s)	174
BspMAI	CTGCAG	2 cut(s)	399, 799
BspPI	GGATC	3 cut(s)	47, 152, 746
BspQI	GCTCTTC	1 cut(s)	468
BspTNI	GGTCTC	1 cut(s)	1284
BsrDI	GCAATG	2 cut(s)	1030, 1147
BsrI	ACTGG	2 cut(s)	134, 1216
BssECI	CCNNGG	2 cut(s)	168, 733
BssMI	GATC	6 cut(s)	52, 157, 198, 253, 738, 1084
BssSI	CACGAG	1 cut(s)	1158
BssT1I	CCWWGG	1 cut(s)	168
Bst2BI	CACGAG	1 cut(s)	1158
Bst4CI	ACNGT	3 cut(s)	375, 907, 1200
Bst6I	CTCTTC	4 cut(s)	192, 468, 567, 834
BstAPI	GCANNNNNTGC	1 cut(s)	803
BstBAI	YACGTR	1 cut(s)	307
BstC8I	GCNNGC	3 cut(s)	111, 504, 610
BstDEI	CTNAG	5 cut(s)	12, 204, 1191, 1265, 1281
BstDSI	CCRYGG	1 cut(s)	168
BstENI	CCTNNNNNAGG	2 cut(s)	85, 650
BstH2I	RGCGCY	1 cut(s)	932
BstHHI	GCGC	2 cut(s)	508, 931
BstKTI	GATC	6 cut(s)	55, 160, 201, 256, 741, 1087
BstMAI	GTCTC	2 cut(s)	1123, 1284
BstMBI	GATC	6 cut(s)	52, 157, 198, 253, 738, 1084
BstNSI	RCATGY	1 cut(s)	132
BstSCI	CCNGG	1 cut(s)	732
BstSFI	CTRYAG	2 cut(s)	395, 795
BstV2I	GAAGAC	1 cut(s)	822
BstX2I	RGATCY	2 cut(s)	52, 738
BstYI	RGATCY	2 cut(s)	52, 738
BsuRI	GGCC	2 cut(s)	75, 608
BtgI	CCRYGG	1 cut(s)	168
BtsIMutI	CAGTG	3 cut(s)	212, 475, 1223
Cac8I	GCNNGC	3 cut(s)	111, 504, 610
CaiI	CAGNNNCTG	3 cut(s)	211, 803, 1198
CciI	TCATGA	1 cut(s)	1087
CfoI	GCGC	2 cut(s)	508, 931
Cfr13I	GGNCC	1 cut(s)	1068
CseI	GACGC	1 cut(s)	1165
Csp6I	GTAC	4 cut(s)	222, 308, 406, 458
CviAII	CATG	6 cut(s)	129, 169, 871, 1034, 1088, 1207
CviQI	GTAC	4 cut(s)	222, 308, 406, 458
DdeI	CTNAG	5 cut(s)	12, 204, 1191, 1265, 1281
DpnI	GATC	6 cut(s)	54, 159, 200, 255, 740, 1086
DpnII	GATC	6 cut(s)	52, 157, 198, 253, 738, 1084
DraIII	CACNNNGTG	1 cut(s)	207
Eam1104I	CTCTTC	4 cut(s)	192, 468, 567, 834
EarI	CTCTTC	4 cut(s)	192, 468, 567, 834
Eco130I	CCWWGG	1 cut(s)	168
Eco147I	AGGCCT	1 cut(s)	75
Eco31I	GGTCTC	1 cut(s)	1284
Eco47I	GGWCC	1 cut(s)	1068
EcoNI	CCTNNNNNAGG	2 cut(s)	85, 650
EcoT14I	CCWWGG	1 cut(s)	168
ErhI	CCWWGG	1 cut(s)	168
Esp3I	CGTCTC	1 cut(s)	1123
FaeI	CATG	6 cut(s)	132, 172, 874, 1037, 1091, 1210
FaqI	GGGAC	1 cut(s)	538
FatI	CATG	6 cut(s)	128, 168, 870, 1033, 1087, 1206
FbaI	TGATCA	2 cut(s)	198, 1084
FspBI	CTAG	7 cut(s)	266, 347, 440, 536, 884, 900, 926
GlaI	GCGC	2 cut(s)	507, 930
GsuI	CTGGAG	1 cut(s)	59
HaeII	RGCGCY	1 cut(s)	932
HaeIII	GGCC	2 cut(s)	75, 608
HapII	CCGG	1 cut(s)	733
HgaI	GACGC	1 cut(s)	1165
HhaI	GCGC	2 cut(s)	508, 931
Hin1II	CATG	6 cut(s)	132, 172, 874, 1037, 1091, 1210
Hin6I	GCGC	2 cut(s)	506, 929
HinP1I	GCGC	2 cut(s)	506, 929
HindIII	AAGCTT	1 cut(s)	149
HpaII	CCGG	1 cut(s)	733
HphI	GGTGA	2 cut(s)	157, 363
Hpy166II	GTNNAC	1 cut(s)	378
Hpy188I	TCNGA	8 cut(s)	126, 250, 522, 670, 784, 812, 863, 1072
Hpy188III	TCNNGA	7 cut(s)	38, 266, 334, 446, 742, 1088, 1283
Hpy8I	GTNNAC	1 cut(s)	378
Hpy99I	CGWCG	1 cut(s)	1181
HpyCH4III	ACNGT	3 cut(s)	375, 907, 1200
HpyCH4IV	ACGT	1 cut(s)	306
HpyF3I	CTNAG	5 cut(s)	12, 204, 1191, 1265, 1281
HpySE526I	ACGT	1 cut(s)	306
Hsp92II	CATG	6 cut(s)	132, 172, 874, 1037, 1091, 1210
HspAI	GCGC	2 cut(s)	506, 929
Ksp22I	TGATCA	2 cut(s)	198, 1084
Kzo9I	GATC	6 cut(s)	52, 157, 198, 253, 738, 1084
LguI	GCTCTTC	1 cut(s)	468
LmnI	GCTCC	2 cut(s)	40, 396
LweI	GCATC	5 cut(s)	495, 513, 674, 699, 790
MaeI	CTAG	7 cut(s)	266, 347, 440, 536, 884, 900, 926
MaeII	ACGT	1 cut(s)	306
MaeIII	GTNAC	6 cut(s)	58, 136, 417, 886, 1194, 1200
MalI	GATC	6 cut(s)	54, 159, 200, 255, 740, 1086
MboI	GATC	6 cut(s)	52, 157, 198, 253, 738, 1084
MboII	GAAGA	7 cut(s)	179, 360, 485, 584, 711, 822, 851
MflI	RGATCY	2 cut(s)	52, 738
MhlI	GDGCHC	2 cut(s)	480, 1095
MluCI	AATT	6 cut(s)	30, 545, 762, 948, 986, 1295
MlyI	GAGTC	5 cut(s)	55, 560, 860, 1183, 1280
MseI	TTAA	1 cut(s)	993
MslI	CAYNNNNRTG	2 cut(s)	774, 1304
MspA1I	CMGCKG	2 cut(s)	116, 751
MspI	CCGG	1 cut(s)	733
MspR9I	CCNGG	1 cut(s)	734
Mva1269I	GAATGC	3 cut(s)	96, 620, 1029
NciI	CCSGG	1 cut(s)	734
NcoI	CCATGG	1 cut(s)	168
NdeII	GATC	6 cut(s)	52, 157, 198, 253, 738, 1084
NlaIII	CATG	6 cut(s)	132, 172, 874, 1037, 1091, 1210
NlaIV	GGNNCC	1 cut(s)	174
NmuCI	GTSAC	3 cut(s)	58, 136, 886
NspI	RCATGY	1 cut(s)	132
PagI	TCATGA	1 cut(s)	1087
PceI	AGGCCT	1 cut(s)	75
PciI	ACATGT	1 cut(s)	128
PciSI	GCTCTTC	1 cut(s)	468
PctI	GAATGC	3 cut(s)	96, 620, 1029
PfeI	GAWTC	5 cut(s)	284, 630, 745, 779, 1145
PleI	GAGTC	5 cut(s)	55, 559, 859, 1183, 1280
PpsI	GAGTC	5 cut(s)	55, 559, 859, 1183, 1280
Ppu21I	YACGTR	1 cut(s)	307
PscI	ACATGT	1 cut(s)	128
PspN4I	GGNNCC	1 cut(s)	174
PspPI	GGNCC	1 cut(s)	1068
PstI	CTGCAG	2 cut(s)	399, 799
PstNI	CAGNNNCTG	3 cut(s)	211, 803, 1198
PsuI	RGATCY	2 cut(s)	52, 738
PvuII	CAGCTG	1 cut(s)	751
RsaI	GTAC	4 cut(s)	223, 309, 407, 459
RsaNI	GTAC	4 cut(s)	222, 308, 406, 458
RseI	CAYNNNNRTG	2 cut(s)	774, 1304
SapI	GCTCTTC	1 cut(s)	468
SaqAI	TTAA	1 cut(s)	993
Sau3AI	GATC	6 cut(s)	52, 157, 198, 253, 738, 1084
Sau96I	GGNCC	1 cut(s)	1068
ScaI	AGTACT	1 cut(s)	459
SchI	GAGTC	5 cut(s)	55, 560, 860, 1183, 1280
ScrFI	CCNGG	1 cut(s)	734
SduI	GDGCHC	2 cut(s)	480, 1095
SfaNI	GCATC	5 cut(s)	495, 513, 674, 699, 790
SfcI	CTRYAG	2 cut(s)	395, 795
SinI	GGWCC	1 cut(s)	1068
SmiMI	CAYNNNNRTG	2 cut(s)	774, 1304
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
SpeI	ACTAGT	2 cut(s)	439, 883
Sse9I	AATT	6 cut(s)	30, 545, 762, 948, 986, 1295
SseBI	AGGCCT	1 cut(s)	75
SsiI	CCGC	3 cut(s)	114, 612, 643
SspMI	CTAG	7 cut(s)	266, 347, 440, 536, 884, 900, 926
StuI	AGGCCT	1 cut(s)	75
StyD4I	CCNGG	1 cut(s)	732
StyI	CCWWGG	1 cut(s)	168
TaaI	ACNGT	3 cut(s)	375, 907, 1200
TaiI	ACGT	1 cut(s)	309
TaqI	TCGA	4 cut(s)	92, 354, 498, 1099
TasI	AATT	6 cut(s)	30, 545, 762, 948, 986, 1295
TatI	WGTACW	1 cut(s)	457
TauI	GCSGC	3 cut(s)	116, 615, 645
TfiI	GAWTC	5 cut(s)	284, 630, 745, 779, 1145
Tru1I	TTAA	1 cut(s)	993
Tru9I	TTAA	1 cut(s)	993
TscAI	CASTG	3 cut(s)	212, 475, 1223
TseFI	GTSAC	3 cut(s)	58, 136, 886
Tsp45I	GTSAC	3 cut(s)	58, 136, 886
TspDTI	ATGAA	4 cut(s)	17, 613, 1022, 1288
TspRI	CASTG	3 cut(s)	212, 475, 1223
VpaK11BI	GGWCC	1 cut(s)	1068
XagI	CCTNNNNNAGG	2 cut(s)	85, 650
XbaI	TCTAGA	1 cut(s)	265
XceI	RCATGY	1 cut(s)	132
XspI	CTAG	7 cut(s)	266, 347, 440, 536, 884, 900, 926
ZrmI	AGTACT	1 cut(s)	459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.