Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0016739

Physical Location & Seq

Genomic Coordinates Reverse (-)

32858753 .. 32860054

Gene Structure 1302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018625

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

ATGAGCATACCTGAGCTGTTTATATGCCCAATTAGTCTGGAGCTGTTCAAAGATCCAGTGACTCTATGCACAGGCCTAACCTATGACAGGTCGAGCATTCAACAATGGCTGGCTGCTGGTAATCTGACATGTCCAGTCACAATGCAGAAGCTTGATGATCCAATCACCATGGTTCCGAATCACACTCTTCGCCATTTGATCACTCAGTGGCTGCAAATGGGTAGTCAAACTCAAAACTTGAATCATTCTGATGATCATTGTCACTTGGAAACCACAACTGTTGAGTCTTTAGCTTCACTCAAACACATACTAGAGTCTCGTGAGTTTGCCTTCGAGAGCAAGGTTCAAGCACTCGAAAAGATTTCATCTTCACCGTCCACAAATTACTTGCTTCTGCAACTCGGGTACTTGCCTTTGCTACTGGAACTAGTCTTTGGAATAGTTCCAGAGGCCAGAGTACTACTCATCAGTGAAGAGTACTACTACATCAAGTTTGTTGAGCTTGCGCTCTCTCGTGTTCTGATACTGCTGCCTCTAGGGGGTCAGTTCAAGCCTCTAAATATTTTGAAAGAAGAGAGTAAATTGTCGTCTTTCGAAGTTTTGTTGGCGGGCGGCTCTGCATTCATCAGAATCAACTTGTGCCACCTTATAGAGGCAGTTTCAGCATCAGAGAGCAGCAGCAGCAGCACAAAAGGGCTGCGTGTTGTTCTTGGAAAGAACCAGGGGATCTTGACTCAGCTGGTTCAGCTAATTCTTCACCCGAGTGATTCGGAGGAGGAGGCTCCAGACGCTGCAATCAGAGCCGTGTCAGCATTGTCTTCCTTTGAAGATAACATAGAGTCTTTGGTCAGAAATGGCATGTTAAATGGACTAGTGACATACATTACTAGGACCGAAAAGCGCGAAAGAAGCTTGGCGCCATTGGCAACGGCGATAATTGAGAGGCTTTTAGGAGTAGAGAGTGGAAAAGAGGAATTGCTTAATAGTAATAACAATAATGGCACCGGTGGCAATGGCATTCATGCTCTTGTTAAGATGGTTTTCAGGGTATCGTGGTCCAATGTTGATGATGACCATGAACACCACCGAGGGAGTGAGAGTGCCGTTACCTCACTTCTGATTGTGTGCAATGATTCTTTATCGGCACGAGAGGAAGCCATTAGCGCCGGAGTGTTGACTCAGTTACTATTGCTTATGCAGAGCCAGTGCAGCAATAGCACCAAAGCGAAGGCGAGAATGTTACTCAAACTCCTTAGAACCAAGCGGTCTCAGGACCCCAAGCAATTAATCTCAATGGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009814 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0098542 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

U-box

Protein Analysis

434

Amino Acids

47.77

Weight (kDa)

5.78

Isoelectric Point (pI)

49.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
U-box	PF04564	3 - 72	2.1e-17	U-box domain
ARM_PUB	PF25598	181 - 423	1.2e-24	Plant U-box protein ARM repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016739)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g24450
malus_domestica	MD01G1005300.v1.1
prunus_persica	Prupe.4G271800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0121551
rosa_laevigata	RLG00000018625
rosa_multiflora	Rmu_sc0000315.1_g000027 Rmu_sc0007658.1_g000009
rosa_roxburghii	Rroxscaffold_2G00122360
rosa_rugosa	Rorug02G0233700
rosa_samantha	Rh2AG290500 Rh2BG301300 Rh2CG280000 Rh2DG315200
rosa_wichuraiana	Rw2G023300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	916, 1001
AccII	CGCG	1 cut(s)	903
AciI	CCGC	3 cut(s)	608, 612, 1264
AclWI	GGATC	3 cut(s)	47, 152, 734
AcyI	GRCGYC	1 cut(s)	917
AdeI	CACNNNGTG	1 cut(s)	207
AfaI	GTAC	3 cut(s)	407, 459, 479
AfiI	CCNNNNNNNGG	3 cut(s)	87, 539, 652
AflIII	ACRYGT	1 cut(s)	128
AgeI	ACCGGT	1 cut(s)	1004
AgsI	TTSAA	7 cut(s)	49, 101, 241, 347, 550, 568, 827
AhlI	ACTAGT	2 cut(s)	427, 871
AjnI	CCWGG	1 cut(s)	720
AjuI	GAANNNNNNNTTGG	2 cut(s)	417, 449
AleI	CACNNNNGTG	1 cut(s)	762
AluBI	AGCT	8 cut(s)	16, 43, 151, 293, 502, 739, 748, 912
AluI	AGCT	8 cut(s)	16, 43, 151, 293, 502, 739, 748, 912
Alw26I	GTCTC	2 cut(s)	321, 1272
AlwI	GGATC	3 cut(s)	47, 152, 734
AlwNI	CAGNNNCTG	2 cut(s)	211, 791
Ama87I	CYCGRG	2 cut(s)	401, 760
AoxI	GGCC	2 cut(s)	73, 450
ArsI	GACNNNNNNTTYG	2 cut(s)	208, 240
AseI	ATTAAT	1 cut(s)	1286
AsiGI	ACCGGT	1 cut(s)	1004
AspLEI	GCGC	4 cut(s)	508, 903, 919, 1166
AspS9I	GGNCC	3 cut(s)	891, 1056, 1273
AsuHPI	GGTGA	3 cut(s)	157, 363, 749
AsuII	TTCGAA	1 cut(s)	594
AvaI	CYCGRG	2 cut(s)	401, 760
AvaII	GGWCC	3 cut(s)	891, 1056, 1273
BanI	GGYRCC	2 cut(s)	916, 1001
BauI	CACGAG	3 cut(s)	318, 513, 1146
BbsI	GAAGAC	1 cut(s)	810
BccI	CCATC	1 cut(s)	1030
BceAI	ACGGC	3 cut(s)	788, 945, 1088
BciT130I	CCWGG	1 cut(s)	722
BclI	TGATCA	2 cut(s)	198, 253
BcoDI	GTCTC	2 cut(s)	321, 1272
BcuI	ACTAGT	2 cut(s)	427, 871
BfaI	CTAG	6 cut(s)	311, 428, 536, 872, 888, 1300
BfoI	RGCGCY	2 cut(s)	920, 1167
BmcAI	AGTACT	2 cut(s)	459, 479
Bme1390I	CCNGG	1 cut(s)	722
Bme18I	GGWCC	3 cut(s)	891, 1056, 1273
BmeT110I	CYCGRG	2 cut(s)	401, 760
BmgT120I	GGNCC	3 cut(s)	891, 1056, 1273
BmiI	GGNNCC	5 cut(s)	174, 783, 918, 1003, 1275
BmrFI	CCNGG	1 cut(s)	722
BmsI	GCATC	1 cut(s)	674
BpiI	GAAGAC	1 cut(s)	810
BplI	GAGNNNNNCTC	2 cut(s)	447, 479
BpmI	CTGGAG	2 cut(s)	59, 768
Bpu10I	CCTNAGC	1 cut(s)	12
Bpu14I	TTCGAA	1 cut(s)	594
BsaHI	GRCGYC	1 cut(s)	917
BsaI	GGTCTC	1 cut(s)	1272
BsaJI	CCNNGG	3 cut(s)	168, 721, 1087
BsaWI	WCCGGW	1 cut(s)	1004
BsaXI	ACNNNNNCTCC	4 cut(s)	1084, 1114, 1233, 1263
Bsc4I	CCNNNNNNNGG	3 cut(s)	87, 539, 652
Bse118I	RCCGGY	1 cut(s)	1004
Bse1I	ACTGG	4 cut(s)	56, 134, 426, 1204
Bse3DI	GCAATG	2 cut(s)	1018, 1135
BseBI	CCWGG	1 cut(s)	722
BseDI	CCNNGG	3 cut(s)	168, 721, 1087
BseLI	CCNNNNNNNGG	3 cut(s)	87, 539, 652
BseMI	GCAATG	2 cut(s)	1018, 1135
BseMII	CTCAG	4 cut(s)	218, 749, 1193, 1283
BseNI	ACTGG	4 cut(s)	56, 134, 426, 1204
BseRI	GAGGAG	2 cut(s)	788, 791
BsgI	GTGCAG	1 cut(s)	1228
Bsh1236I	CGCG	1 cut(s)	903
BshFI	GGCC	2 cut(s)	75, 452
BshNI	GGYRCC	2 cut(s)	916, 1001
BshTI	ACCGGT	1 cut(s)	1004
BsiHKCI	CYCGRG	2 cut(s)	401, 760
BsiSI	CCGG	2 cut(s)	1005, 1167
BslI	CCNNNNNNNGG	3 cut(s)	87, 539, 652
BsmAI	GTCTC	2 cut(s)	321, 1272
BsmI	GAATGC	3 cut(s)	96, 620, 1017
BsnI	GGCC	2 cut(s)	75, 452
Bso31I	GGTCTC	1 cut(s)	1272
BsoBI	CYCGRG	2 cut(s)	401, 760
Bsp119I	TTCGAA	1 cut(s)	594
Bsp143I	GATC	5 cut(s)	52, 157, 198, 253, 726
Bsp19I	CCATGG	1 cut(s)	168
BspACI	CCGC	3 cut(s)	608, 612, 1264
BspANI	GGCC	2 cut(s)	75, 452
BspCNI	CTCAG	5 cut(s)	4, 217, 748, 1192, 1282
BspFNI	CGCG	1 cut(s)	903
BspLI	GGNNCC	5 cut(s)	174, 783, 918, 1003, 1275
BspPI	GGATC	3 cut(s)	47, 152, 734
BspT104I	TTCGAA	1 cut(s)	594
BspT107I	GGYRCC	2 cut(s)	916, 1001
BspTNI	GGTCTC	1 cut(s)	1272
BsrDI	GCAATG	2 cut(s)	1018, 1135
BsrFI	RCCGGY	1 cut(s)	1004
BsrI	ACTGG	4 cut(s)	56, 134, 426, 1204
BssAI	RCCGGY	1 cut(s)	1004
BssECI	CCNNGG	3 cut(s)	168, 721, 1087
BssMI	GATC	5 cut(s)	52, 157, 198, 253, 726
BssNI	GRCGYC	1 cut(s)	917
BssSI	CACGAG	3 cut(s)	318, 513, 1146
BssT1I	CCWWGG	1 cut(s)	168
Bst2BI	CACGAG	3 cut(s)	318, 513, 1146
Bst2UI	CCWGG	1 cut(s)	722
Bst4CI	ACNGT	2 cut(s)	280, 375
Bst6I	CTCTTC	3 cut(s)	192, 468, 567
BstACI	GRCGYC	1 cut(s)	917
BstBI	TTCGAA	1 cut(s)	594
BstC8I	GCNNGC	3 cut(s)	111, 504, 610
BstDEI	CTNAG	6 cut(s)	12, 204, 735, 1179, 1253, 1269
BstDSI	CCRYGG	1 cut(s)	168
BstENI	CCTNNNNNAGG	2 cut(s)	85, 650
BstFNI	CGCG	1 cut(s)	903
BstH2I	RGCGCY	2 cut(s)	920, 1167
BstHHI	GCGC	4 cut(s)	508, 903, 919, 1166
BstKTI	GATC	5 cut(s)	55, 160, 201, 256, 729
BstMAI	GTCTC	2 cut(s)	321, 1272
BstMBI	GATC	5 cut(s)	52, 157, 198, 253, 726
BstNI	CCWGG	1 cut(s)	722
BstNSI	RCATGY	2 cut(s)	132, 862
BstSCI	CCNGG	1 cut(s)	720
BstUI	CGCG	1 cut(s)	903
BstV2I	GAAGAC	1 cut(s)	810
BstX2I	RGATCY	2 cut(s)	52, 726
BstYI	RGATCY	2 cut(s)	52, 726
BsuRI	GGCC	2 cut(s)	75, 452
BtgI	CCRYGG	1 cut(s)	168
BtsIMutI	CAGTG	4 cut(s)	63, 212, 475, 1211
Cac8I	GCNNGC	3 cut(s)	111, 504, 610
CaiI	CAGNNNCTG	2 cut(s)	211, 791
CfoI	GCGC	4 cut(s)	508, 903, 919, 1166
Cfr10I	RCCGGY	1 cut(s)	1004
Cfr13I	GGNCC	3 cut(s)	891, 1056, 1273
CseI	GACGC	1 cut(s)	797
Csp6I	GTAC	3 cut(s)	406, 458, 478
CspAI	ACCGGT	1 cut(s)	1004
CspCI	CAANNNNNGTGG	2 cut(s)	262, 297
CviAII	CATG	5 cut(s)	129, 169, 859, 1022, 1076
CviQI	GTAC	3 cut(s)	406, 458, 478
DdeI	CTNAG	6 cut(s)	12, 204, 735, 1179, 1253, 1269
DinI	GGCGCC	1 cut(s)	918
DpnI	GATC	5 cut(s)	54, 159, 200, 255, 728
DpnII	GATC	5 cut(s)	52, 157, 198, 253, 726
DraIII	CACNNNGTG	1 cut(s)	207
Eam1104I	CTCTTC	3 cut(s)	192, 468, 567
EarI	CTCTTC	3 cut(s)	192, 468, 567
Eco130I	CCWWGG	1 cut(s)	168
Eco147I	AGGCCT	1 cut(s)	75
Eco31I	GGTCTC	1 cut(s)	1272
Eco47I	GGWCC	3 cut(s)	891, 1056, 1273
Eco88I	CYCGRG	2 cut(s)	401, 760
EcoNI	CCTNNNNNAGG	2 cut(s)	85, 650
EcoO109I	RGGNCCY	1 cut(s)	1273
EcoRII	CCWGG	1 cut(s)	720
EcoT14I	CCWWGG	1 cut(s)	168
EgeI	GGCGCC	1 cut(s)	918
EheI	GGCGCC	1 cut(s)	918
ErhI	CCWWGG	1 cut(s)	168
FaeI	CATG	5 cut(s)	132, 172, 862, 1025, 1079
FatI	CATG	5 cut(s)	128, 168, 858, 1021, 1075
FauI	CCCGC	1 cut(s)	601
FbaI	TGATCA	2 cut(s)	198, 253
FspBI	CTAG	6 cut(s)	311, 428, 536, 872, 888, 1300
GlaI	GCGC	4 cut(s)	507, 902, 918, 1165
GsuI	CTGGAG	2 cut(s)	59, 768
HaeII	RGCGCY	2 cut(s)	920, 1167
HaeIII	GGCC	2 cut(s)	75, 452
HapII	CCGG	2 cut(s)	1005, 1167
HgaI	GACGC	1 cut(s)	797
HhaI	GCGC	4 cut(s)	508, 903, 919, 1166
Hin1I	GRCGYC	1 cut(s)	917
Hin1II	CATG	5 cut(s)	132, 172, 862, 1025, 1079
Hin6I	GCGC	4 cut(s)	506, 901, 917, 1164
HinP1I	GCGC	4 cut(s)	506, 901, 917, 1164
HincII	GTYRAC	1 cut(s)	1176
HindII	GTYRAC	1 cut(s)	1176
HindIII	AAGCTT	2 cut(s)	149, 910
HpaII	CCGG	2 cut(s)	1005, 1167
HphI	GGTGA	3 cut(s)	157, 363, 749
Hpy166II	GTNNAC	2 cut(s)	378, 1176
Hpy188III	TCNNGA	7 cut(s)	38, 320, 334, 446, 730, 785, 1271
Hpy8I	GTNNAC	2 cut(s)	378, 1176
HpyAV	CCTTC	2 cut(s)	340, 1222
HpyCH4III	ACNGT	2 cut(s)	280, 375
HpyCH4V	TGCA	9 cut(s)	69, 145, 214, 397, 620, 794, 1128, 1198, 1209
HpyF3I	CTNAG	6 cut(s)	12, 204, 735, 1179, 1253, 1269
Hsp92I	GRCGYC	1 cut(s)	917
Hsp92II	CATG	5 cut(s)	132, 172, 862, 1025, 1079
HspAI	GCGC	4 cut(s)	506, 901, 917, 1164
KasI	GGCGCC	1 cut(s)	916
Ksp22I	TGATCA	2 cut(s)	198, 253
Kzo9I	GATC	5 cut(s)	52, 157, 198, 253, 726
LmnI	GCTCC	2 cut(s)	40, 787
LweI	GCATC	1 cut(s)	674
MaeI	CTAG	6 cut(s)	311, 428, 536, 872, 888, 1300
MaeIII	GTNAC	7 cut(s)	58, 136, 260, 874, 1105, 1182, 1239
MalI	GATC	5 cut(s)	54, 159, 200, 255, 728
MboI	GATC	5 cut(s)	52, 157, 198, 253, 726
MboII	GAAGA	7 cut(s)	179, 360, 485, 584, 746, 810, 839
MflI	RGATCY	2 cut(s)	52, 726
MluCI	AATT	7 cut(s)	30, 382, 581, 750, 936, 974, 1283
Mly113I	GGCGCC	1 cut(s)	917
MlyI	GAGTC	6 cut(s)	55, 293, 323, 727, 848, 1171
MseI	TTAA	4 cut(s)	863, 981, 1032, 1286
MslI	CAYNNNNRTG	2 cut(s)	249, 762
MspA1I	CMGCKG	1 cut(s)	739
MspI	CCGG	2 cut(s)	1005, 1167
MspR9I	CCNGG	1 cut(s)	722
Mva1269I	GAATGC	3 cut(s)	96, 620, 1017
MvaI	CCWGG	1 cut(s)	722
MvnI	CGCG	1 cut(s)	903
NarI	GGCGCC	1 cut(s)	917
NcoI	CCATGG	1 cut(s)	168
NdeII	GATC	5 cut(s)	52, 157, 198, 253, 726
NlaIII	CATG	5 cut(s)	132, 172, 862, 1025, 1079
NlaIV	GGNNCC	5 cut(s)	174, 783, 918, 1003, 1275
NmuCI	GTSAC	4 cut(s)	58, 136, 260, 874
NspI	RCATGY	2 cut(s)	132, 862
NspV	TTCGAA	1 cut(s)	594
OliI	CACNNNNGTG	1 cut(s)	762
PceI	AGGCCT	1 cut(s)	75
PciI	ACATGT	1 cut(s)	128
PctI	GAATGC	3 cut(s)	96, 620, 1017
PfeI	GAWTC	5 cut(s)	178, 241, 630, 767, 1133
PinAI	ACCGGT	1 cut(s)	1004
PleI	GAGTC	6 cut(s)	55, 292, 322, 727, 847, 1171
PluTI	GGCGCC	1 cut(s)	920
PpsI	GAGTC	6 cut(s)	55, 292, 322, 727, 847, 1171
PpuMI	RGGWCCY	1 cut(s)	1273
PscI	ACATGT	1 cut(s)	128
PshBI	ATTAAT	1 cut(s)	1286
Psp5II	RGGWCCY	1 cut(s)	1273
Psp6I	CCWGG	1 cut(s)	720
PspGI	CCWGG	1 cut(s)	720
PspN4I	GGNNCC	5 cut(s)	174, 783, 918, 1003, 1275
PspPI	GGNCC	3 cut(s)	891, 1056, 1273
PspPPI	RGGWCCY	1 cut(s)	1273
PstNI	CAGNNNCTG	2 cut(s)	211, 791
PsuI	RGATCY	2 cut(s)	52, 726
PvuII	CAGCTG	1 cut(s)	739
RsaI	GTAC	3 cut(s)	407, 459, 479
RsaNI	GTAC	3 cut(s)	406, 458, 478
RseI	CAYNNNNRTG	2 cut(s)	249, 762
SaqAI	TTAA	4 cut(s)	863, 981, 1032, 1286
Sau3AI	GATC	5 cut(s)	52, 157, 198, 253, 726
Sau96I	GGNCC	3 cut(s)	891, 1056, 1273
ScaI	AGTACT	2 cut(s)	459, 479
SchI	GAGTC	6 cut(s)	55, 293, 323, 727, 848, 1171
ScrFI	CCNGG	1 cut(s)	722
SfaNI	GCATC	1 cut(s)	674
SfoI	GGCGCC	1 cut(s)	918
SfuI	TTCGAA	1 cut(s)	594
SgrAI	CRCCGGYG	1 cut(s)	1004
SinI	GGWCC	3 cut(s)	891, 1056, 1273
SmiMI	CAYNNNNRTG	2 cut(s)	249, 762
SpeI	ACTAGT	2 cut(s)	427, 871
Sse9I	AATT	7 cut(s)	30, 382, 581, 750, 936, 974, 1283
SseBI	AGGCCT	1 cut(s)	75
SsiI	CCGC	3 cut(s)	608, 612, 1264
SspDI	GGCGCC	1 cut(s)	916
SspI	AATATT	1 cut(s)	562
SspMI	CTAG	6 cut(s)	311, 428, 536, 872, 888, 1300
StuI	AGGCCT	1 cut(s)	75
StyD4I	CCNGG	1 cut(s)	720
StyI	CCWWGG	1 cut(s)	168
TaaI	ACNGT	2 cut(s)	280, 375
TaqI	TCGA	4 cut(s)	92, 333, 354, 594
TaqII	GACCGA	1 cut(s)	908
TasI	AATT	7 cut(s)	30, 382, 581, 750, 936, 974, 1283
TatI	WGTACW	2 cut(s)	457, 477
TauI	GCSGC	1 cut(s)	615
TfiI	GAWTC	5 cut(s)	178, 241, 630, 767, 1133
Tru1I	TTAA	4 cut(s)	863, 981, 1032, 1286
Tru9I	TTAA	4 cut(s)	863, 981, 1032, 1286
TscAI	CASTG	4 cut(s)	63, 212, 475, 1211
TseFI	GTSAC	4 cut(s)	58, 136, 260, 874
Tsp45I	GTSAC	4 cut(s)	58, 136, 260, 874
TspDTI	ATGAA	4 cut(s)	354, 613, 1010, 1092
TspRI	CASTG	4 cut(s)	63, 212, 475, 1211
VpaK11BI	GGWCC	3 cut(s)	891, 1056, 1273
VspI	ATTAAT	1 cut(s)	1286
XagI	CCTNNNNNAGG	2 cut(s)	85, 650
XceI	RCATGY	2 cut(s)	132, 862
XspI	CTAG	6 cut(s)	311, 428, 536, 872, 888, 1300
ZrmI	AGTACT	2 cut(s)	459, 479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.