Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000315.1

Orthogroup ID

OG0016739

Physical Location & Seq

Genomic Coordinates Forward (+)

136958 .. 138259

Gene Structure 1302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000315.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

atgtgcatacctgagctgtttatatgcccaattagtctggagctgttcaaagatccagtgactctatgcacaggcctaacctatgacaggtcgagcattcaacaatggctagctgctggtaatctgacatgtccagtcacaatgcagaagcttgatgatccaatcaccatggttccgaatcacactcttcgccatttgatcactcagtggctgcaaatgggtagtcaaactcaaaactcgaatcattctgatgatcattgtctcttggaaaccacaactactgattctttagcttcactcaaacacgtactagagtctcgtgaatttgccttcgagaacaaggtccaagcactcgaaaagatttcatcttcaccgtccacaaattacttgctactgcagctcgggtacttgcctttgctactggaactagtctttggactagttccagaagccagagtactactcatcagtgaagagtactactacatcaagtttgttgagcttgcgctgtctcgtgttctgatactgctgcctctagggggtgggttcgagcctctagatattttgaaagaagagagtaaattgtcatctttcgaagccttgttggcgggcggctctgcattcatcagaatcaacttgtgccgccttatagaagcagtttcagcatcagagagtagcagcagcagcacaaaagggctgcgtgttgttcttggaaagaaccaggggatcttgactcagctggttcagctaattcttcaccagagtgattcggaggaggaggctgcagatgctgcaatcagagccgtgtcagcattgtcttcctttgaagataacatagagtctttggtcagaaatggcatgttaaatggactagtgacatacattactaggaccgaaaagcgcgaaagaagcttggcgccattggcaacggcgataattgagaggcttttaggagtagagagtggaaaagaggaattgcttaatagtaataacaataatggcaccggtggcaatggcattcatgctcttgttaagatggttttcagggtatcgtggtccaatgttgatgatgaccatgaacaccaccgagggagtgagagtgccgttacctcacttttgattgtgtgcaatgattctttatcggcacgagaggaagccattagcgccggagtgttgactcagttactattgcttatgcagagccagtgcggcaatagcaccaaagcaaaggcgagaatgttactcaaactccttagaaccaagtggtctcaggactccaagcaattaatctcaatggtctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009814 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0098542 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

U-box

Protein Analysis

433

Amino Acids

47.65

Weight (kDa)

5.39

Isoelectric Point (pI)

45.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016739)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g24450
malus_domestica	MD01G1005300.v1.1
prunus_persica	Prupe.4G271800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0121551
rosa_laevigata	RLG00000018625
rosa_multiflora	Rmu_sc0000315.1_g000027 Rmu_sc0007658.1_g000009
rosa_roxburghii	Rroxscaffold_2G00122360
rosa_rugosa	Rorug02G0233700
rosa_samantha	Rh2AG290500 Rh2BG301300 Rh2CG280000 Rh2DG315200
rosa_wichuraiana	Rw2G023300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	916, 1001
AccII	CGCG	1 cut(s)	903
AciI	CCGC	4 cut(s)	608, 612, 643, 1209
AclWI	GGATC	3 cut(s)	47, 152, 734
AcsI	RAATTY	1 cut(s)	323
AcyI	GRCGYC	1 cut(s)	917
AdeI	CACNNNGTG	1 cut(s)	207
AfaI	GTAC	4 cut(s)	309, 407, 459, 479
AfiI	CCNNNNNNNGG	2 cut(s)	87, 539
AflIII	ACRYGT	2 cut(s)	128, 304
AgeI	ACCGGT	1 cut(s)	1004
AgsI	TTSAA	4 cut(s)	49, 101, 568, 827
AhlI	ACTAGT	3 cut(s)	427, 439, 871
AjnI	CCWGG	1 cut(s)	720
AjuI	GAANNNNNNNTTGG	2 cut(s)	417, 449
AleI	CACNNNNGTG	1 cut(s)	762
Alw26I	GTCTC	4 cut(s)	266, 321, 516, 1272
AlwI	GGATC	3 cut(s)	47, 152, 734
AlwNI	CAGNNNCTG	2 cut(s)	211, 791
Ama87I	CYCGRG	1 cut(s)	401
AoxI	GGCC	1 cut(s)	73
ApoI	RAATTY	1 cut(s)	323
ArsI	GACNNNNNNTTYG	2 cut(s)	208, 240
AseI	ATTAAT	1 cut(s)	1286
AsiGI	ACCGGT	1 cut(s)	1004
AspLEI	GCGC	4 cut(s)	508, 903, 919, 1166
AspS9I	GGNCC	3 cut(s)	343, 891, 1056
AsuHPI	GGTGA	3 cut(s)	157, 363, 749
AsuII	TTCGAA	1 cut(s)	594
AsuNHI	GCTAGC	1 cut(s)	109
AvaI	CYCGRG	1 cut(s)	401
AvaII	GGWCC	3 cut(s)	343, 891, 1056
BanI	GGYRCC	2 cut(s)	916, 1001
BarI	GAAGNNNNNNTAC	2 cut(s)	441, 473
BauI	CACGAG	3 cut(s)	318, 513, 1146
BbsI	GAAGAC	1 cut(s)	810
BccI	CCATC	1 cut(s)	1030
BceAI	ACGGC	3 cut(s)	788, 945, 1088
BciT130I	CCWGG	1 cut(s)	722
BclI	TGATCA	2 cut(s)	198, 253
BcoDI	GTCTC	4 cut(s)	266, 321, 516, 1272
BcuI	ACTAGT	3 cut(s)	427, 439, 871
BfaI	CTAG	9 cut(s)	110, 311, 428, 440, 536, 557, 872, 888, 1300
BfmI	CTRYAG	2 cut(s)	395, 783
BfoI	RGCGCY	2 cut(s)	920, 1167
BglI	GCCNNNNNGGC	2 cut(s)	605, 1209
BmcAI	AGTACT	2 cut(s)	459, 479
Bme1390I	CCNGG	1 cut(s)	722
Bme18I	GGWCC	3 cut(s)	343, 891, 1056
BmeT110I	CYCGRG	1 cut(s)	401
BmgT120I	GGNCC	3 cut(s)	343, 891, 1056
BmiI	GGNNCC	3 cut(s)	174, 918, 1003
BmrFI	CCNGG	1 cut(s)	722
BmsI	GCATC	2 cut(s)	674, 778
BmtI	GCTAGC	1 cut(s)	113
BpiI	GAAGAC	1 cut(s)	810
BplI	GAGNNNNNCTC	2 cut(s)	447, 479
BpmI	CTGGAG	1 cut(s)	59
Bpu10I	CCTNAGC	1 cut(s)	12
Bpu14I	TTCGAA	1 cut(s)	594
BsaAI	YACGTR	1 cut(s)	307
BsaHI	GRCGYC	1 cut(s)	917
BsaI	GGTCTC	1 cut(s)	1272
BsaJI	CCNNGG	3 cut(s)	168, 721, 1087
BsaWI	WCCGGW	1 cut(s)	1004
BsaXI	ACNNNNNCTCC	4 cut(s)	1084, 1114, 1233, 1263
Bsc4I	CCNNNNNNNGG	2 cut(s)	87, 539
Bse118I	RCCGGY	1 cut(s)	1004
Bse1I	ACTGG	4 cut(s)	56, 134, 426, 1204
Bse3DI	GCAATG	2 cut(s)	1018, 1135
BseBI	CCWGG	1 cut(s)	722
BseDI	CCNNGG	3 cut(s)	168, 721, 1087
BseLI	CCNNNNNNNGG	2 cut(s)	87, 539
BseMI	GCAATG	2 cut(s)	1018, 1135
BseMII	CTCAG	4 cut(s)	218, 749, 1193, 1283
BseNI	ACTGG	4 cut(s)	56, 134, 426, 1204
BseRI	GAGGAG	2 cut(s)	788, 791
Bsh1236I	CGCG	1 cut(s)	903
BshFI	GGCC	1 cut(s)	75
BshNI	GGYRCC	2 cut(s)	916, 1001
BshTI	ACCGGT	1 cut(s)	1004
BsiHKCI	CYCGRG	1 cut(s)	401
BsiSI	CCGG	2 cut(s)	1005, 1167
BslI	CCNNNNNNNGG	2 cut(s)	87, 539
BsmAI	GTCTC	4 cut(s)	266, 321, 516, 1272
BsmI	GAATGC	3 cut(s)	96, 620, 1017
BsnI	GGCC	1 cut(s)	75
Bso31I	GGTCTC	1 cut(s)	1272
BsoBI	CYCGRG	1 cut(s)	401
Bsp119I	TTCGAA	1 cut(s)	594
Bsp143I	GATC	5 cut(s)	52, 157, 198, 253, 726
Bsp19I	CCATGG	1 cut(s)	168
BspACI	CCGC	4 cut(s)	608, 612, 643, 1209
BspANI	GGCC	1 cut(s)	75
BspCNI	CTCAG	5 cut(s)	4, 217, 748, 1192, 1282
BspFNI	CGCG	1 cut(s)	903
BspLI	GGNNCC	3 cut(s)	174, 918, 1003
BspMAI	CTGCAG	2 cut(s)	399, 787
BspOI	GCTAGC	1 cut(s)	113
BspPI	GGATC	3 cut(s)	47, 152, 734
BspT104I	TTCGAA	1 cut(s)	594
BspT107I	GGYRCC	2 cut(s)	916, 1001
BspTNI	GGTCTC	1 cut(s)	1272
BsrDI	GCAATG	2 cut(s)	1018, 1135
BsrFI	RCCGGY	1 cut(s)	1004
BsrI	ACTGG	4 cut(s)	56, 134, 426, 1204
BssAI	RCCGGY	1 cut(s)	1004
BssECI	CCNNGG	3 cut(s)	168, 721, 1087
BssMI	GATC	5 cut(s)	52, 157, 198, 253, 726
BssNI	GRCGYC	1 cut(s)	917
BssSI	CACGAG	3 cut(s)	318, 513, 1146
BssT1I	CCWWGG	1 cut(s)	168
Bst2BI	CACGAG	3 cut(s)	318, 513, 1146
Bst2UI	CCWGG	1 cut(s)	722
Bst4CI	ACNGT	1 cut(s)	375
Bst6I	CTCTTC	3 cut(s)	192, 468, 567
BstACI	GRCGYC	1 cut(s)	917
BstAPI	GCANNNNNTGC	1 cut(s)	791
BstBAI	YACGTR	1 cut(s)	307
BstBI	TTCGAA	1 cut(s)	594
BstC8I	GCNNGC	3 cut(s)	111, 504, 610
BstDEI	CTNAG	6 cut(s)	12, 204, 735, 1179, 1253, 1269
BstDSI	CCRYGG	1 cut(s)	168
BstENI	CCTNNNNNAGG	1 cut(s)	85
BstFNI	CGCG	1 cut(s)	903
BstH2I	RGCGCY	2 cut(s)	920, 1167
BstHHI	GCGC	4 cut(s)	508, 903, 919, 1166
BstKTI	GATC	5 cut(s)	55, 160, 201, 256, 729
BstMAI	GTCTC	4 cut(s)	266, 321, 516, 1272
BstMBI	GATC	5 cut(s)	52, 157, 198, 253, 726
BstNI	CCWGG	1 cut(s)	722
BstNSI	RCATGY	2 cut(s)	132, 862
BstSCI	CCNGG	1 cut(s)	720
BstSFI	CTRYAG	2 cut(s)	395, 783
BstUI	CGCG	1 cut(s)	903
BstV2I	GAAGAC	1 cut(s)	810
BstX2I	RGATCY	2 cut(s)	52, 726
BstYI	RGATCY	2 cut(s)	52, 726
BsuRI	GGCC	1 cut(s)	75
BtgI	CCRYGG	1 cut(s)	168
BtsIMutI	CAGTG	4 cut(s)	63, 212, 475, 1211
Cac8I	GCNNGC	3 cut(s)	111, 504, 610
CaiI	CAGNNNCTG	2 cut(s)	211, 791
CfoI	GCGC	4 cut(s)	508, 903, 919, 1166
Cfr10I	RCCGGY	1 cut(s)	1004
Cfr13I	GGNCC	3 cut(s)	343, 891, 1056
Csp6I	GTAC	4 cut(s)	308, 406, 458, 478
CspAI	ACCGGT	1 cut(s)	1004
CviAII	CATG	5 cut(s)	129, 169, 859, 1022, 1076
CviQI	GTAC	4 cut(s)	308, 406, 458, 478
DdeI	CTNAG	6 cut(s)	12, 204, 735, 1179, 1253, 1269
DinI	GGCGCC	1 cut(s)	918
DpnI	GATC	5 cut(s)	54, 159, 200, 255, 728
DpnII	GATC	5 cut(s)	52, 157, 198, 253, 726
DraIII	CACNNNGTG	1 cut(s)	207
Eam1104I	CTCTTC	3 cut(s)	192, 468, 567
EarI	CTCTTC	3 cut(s)	192, 468, 567
Eco130I	CCWWGG	1 cut(s)	168
Eco147I	AGGCCT	1 cut(s)	75
Eco31I	GGTCTC	1 cut(s)	1272
Eco47I	GGWCC	3 cut(s)	343, 891, 1056
Eco88I	CYCGRG	1 cut(s)	401
EcoNI	CCTNNNNNAGG	1 cut(s)	85
EcoRII	CCWGG	1 cut(s)	720
EcoT14I	CCWWGG	1 cut(s)	168
EgeI	GGCGCC	1 cut(s)	918
EheI	GGCGCC	1 cut(s)	918
ErhI	CCWWGG	1 cut(s)	168
FaeI	CATG	5 cut(s)	132, 172, 862, 1025, 1079
FatI	CATG	5 cut(s)	128, 168, 858, 1021, 1075
FauI	CCCGC	1 cut(s)	601
FbaI	TGATCA	2 cut(s)	198, 253
FspBI	CTAG	9 cut(s)	110, 311, 428, 440, 536, 557, 872, 888, 1300
GlaI	GCGC	4 cut(s)	507, 902, 918, 1165
GsuI	CTGGAG	1 cut(s)	59
HaeII	RGCGCY	2 cut(s)	920, 1167
HaeIII	GGCC	1 cut(s)	75
HapII	CCGG	2 cut(s)	1005, 1167
HhaI	GCGC	4 cut(s)	508, 903, 919, 1166
Hin1I	GRCGYC	1 cut(s)	917
Hin1II	CATG	5 cut(s)	132, 172, 862, 1025, 1079
Hin6I	GCGC	4 cut(s)	506, 901, 917, 1164
HinP1I	GCGC	4 cut(s)	506, 901, 917, 1164
HincII	GTYRAC	1 cut(s)	1176
HindII	GTYRAC	1 cut(s)	1176
HindIII	AAGCTT	2 cut(s)	149, 910
HpaII	CCGG	2 cut(s)	1005, 1167
HphI	GGTGA	3 cut(s)	157, 363, 749
Hpy166II	GTNNAC	2 cut(s)	378, 1176
Hpy188I	TCNGA	9 cut(s)	126, 177, 250, 522, 629, 670, 772, 800, 851
Hpy188III	TCNNGA	7 cut(s)	38, 320, 334, 446, 557, 730, 1271
Hpy8I	GTNNAC	2 cut(s)	378, 1176
HpyAV	CCTTC	1 cut(s)	340
HpyCH4III	ACNGT	1 cut(s)	375
HpyCH4IV	ACGT	1 cut(s)	306
HpyF3I	CTNAG	6 cut(s)	12, 204, 735, 1179, 1253, 1269
HpySE526I	ACGT	1 cut(s)	306
Hsp92I	GRCGYC	1 cut(s)	917
Hsp92II	CATG	5 cut(s)	132, 172, 862, 1025, 1079
HspAI	GCGC	4 cut(s)	506, 901, 917, 1164
KasI	GGCGCC	1 cut(s)	916
Ksp22I	TGATCA	2 cut(s)	198, 253
Kzo9I	GATC	5 cut(s)	52, 157, 198, 253, 726
LmnI	GCTCC	1 cut(s)	40
LweI	GCATC	2 cut(s)	674, 778
MaeI	CTAG	9 cut(s)	110, 311, 428, 440, 536, 557, 872, 888, 1300
MaeII	ACGT	1 cut(s)	306
MaeIII	GTNAC	6 cut(s)	58, 136, 874, 1105, 1182, 1239
MalI	GATC	5 cut(s)	54, 159, 200, 255, 728
MboI	GATC	5 cut(s)	52, 157, 198, 253, 726
MboII	GAAGA	7 cut(s)	179, 360, 485, 584, 746, 810, 839
MflI	RGATCY	2 cut(s)	52, 726
MluCI	AATT	8 cut(s)	30, 323, 382, 581, 750, 936, 974, 1283
Mly113I	GGCGCC	1 cut(s)	917
MlyI	GAGTC	6 cut(s)	55, 323, 727, 848, 1171, 1268
MseI	TTAA	4 cut(s)	863, 981, 1032, 1286
MslI	CAYNNNNRTG	2 cut(s)	249, 762
MspA1I	CMGCKG	1 cut(s)	739
MspI	CCGG	2 cut(s)	1005, 1167
MspR9I	CCNGG	1 cut(s)	722
Mva1269I	GAATGC	3 cut(s)	96, 620, 1017
MvaI	CCWGG	1 cut(s)	722
MvnI	CGCG	1 cut(s)	903
NarI	GGCGCC	1 cut(s)	917
NcoI	CCATGG	1 cut(s)	168
NdeII	GATC	5 cut(s)	52, 157, 198, 253, 726
NheI	GCTAGC	1 cut(s)	109
NlaIII	CATG	5 cut(s)	132, 172, 862, 1025, 1079
NlaIV	GGNNCC	3 cut(s)	174, 918, 1003
NmuCI	GTSAC	3 cut(s)	58, 136, 874
NspI	RCATGY	2 cut(s)	132, 862
NspV	TTCGAA	1 cut(s)	594
OliI	CACNNNNGTG	1 cut(s)	762
PceI	AGGCCT	1 cut(s)	75
PciI	ACATGT	1 cut(s)	128
PctI	GAATGC	3 cut(s)	96, 620, 1017
PfeI	GAWTC	6 cut(s)	178, 241, 284, 630, 767, 1133
PinAI	ACCGGT	1 cut(s)	1004
PleI	GAGTC	6 cut(s)	55, 322, 727, 847, 1171, 1268
PluTI	GGCGCC	1 cut(s)	920
PpsI	GAGTC	6 cut(s)	55, 322, 727, 847, 1171, 1268
Ppu21I	YACGTR	1 cut(s)	307
PscI	ACATGT	1 cut(s)	128
PshBI	ATTAAT	1 cut(s)	1286
Psp6I	CCWGG	1 cut(s)	720
PspGI	CCWGG	1 cut(s)	720
PspN4I	GGNNCC	3 cut(s)	174, 918, 1003
PspPI	GGNCC	3 cut(s)	343, 891, 1056
PstI	CTGCAG	2 cut(s)	399, 787
PstNI	CAGNNNCTG	2 cut(s)	211, 791
PsuI	RGATCY	2 cut(s)	52, 726
PvuII	CAGCTG	1 cut(s)	739
RsaI	GTAC	4 cut(s)	309, 407, 459, 479
RsaNI	GTAC	4 cut(s)	308, 406, 458, 478
RseI	CAYNNNNRTG	2 cut(s)	249, 762
SaqAI	TTAA	4 cut(s)	863, 981, 1032, 1286
Sau3AI	GATC	5 cut(s)	52, 157, 198, 253, 726
Sau96I	GGNCC	3 cut(s)	343, 891, 1056
ScaI	AGTACT	2 cut(s)	459, 479
SchI	GAGTC	6 cut(s)	55, 323, 727, 848, 1171, 1268
ScrFI	CCNGG	1 cut(s)	722
SfaNI	GCATC	2 cut(s)	674, 778
SfcI	CTRYAG	2 cut(s)	395, 783
SfoI	GGCGCC	1 cut(s)	918
SfuI	TTCGAA	1 cut(s)	594
SgrAI	CRCCGGYG	1 cut(s)	1004
SinI	GGWCC	3 cut(s)	343, 891, 1056
SmiMI	CAYNNNNRTG	2 cut(s)	249, 762
SpeI	ACTAGT	3 cut(s)	427, 439, 871
Sse9I	AATT	8 cut(s)	30, 323, 382, 581, 750, 936, 974, 1283
SseBI	AGGCCT	1 cut(s)	75
SsiI	CCGC	4 cut(s)	608, 612, 643, 1209
SspDI	GGCGCC	1 cut(s)	916
SspMI	CTAG	9 cut(s)	110, 311, 428, 440, 536, 557, 872, 888, 1300
StuI	AGGCCT	1 cut(s)	75
StyD4I	CCNGG	1 cut(s)	720
StyI	CCWWGG	1 cut(s)	168
TaaI	ACNGT	1 cut(s)	375
TaiI	ACGT	1 cut(s)	309
TaqI	TCGA	6 cut(s)	92, 239, 333, 354, 549, 594
TaqII	GACCGA	1 cut(s)	908
TasI	AATT	8 cut(s)	30, 323, 382, 581, 750, 936, 974, 1283
TatI	WGTACW	2 cut(s)	457, 477
TauI	GCSGC	3 cut(s)	615, 645, 1212
TfiI	GAWTC	6 cut(s)	178, 241, 284, 630, 767, 1133
Tru1I	TTAA	4 cut(s)	863, 981, 1032, 1286
Tru9I	TTAA	4 cut(s)	863, 981, 1032, 1286
TscAI	CASTG	4 cut(s)	63, 212, 475, 1211
TseFI	GTSAC	3 cut(s)	58, 136, 874
Tsp45I	GTSAC	3 cut(s)	58, 136, 874
TspDTI	ATGAA	4 cut(s)	354, 613, 1010, 1092
TspRI	CASTG	4 cut(s)	63, 212, 475, 1211
VpaK11BI	GGWCC	3 cut(s)	343, 891, 1056
VspI	ATTAAT	1 cut(s)	1286
XagI	CCTNNNNNAGG	1 cut(s)	85
XapI	RAATTY	1 cut(s)	323
XbaI	TCTAGA	1 cut(s)	556
XceI	RCATGY	2 cut(s)	132, 862
XspI	CTAG	9 cut(s)	110, 311, 428, 440, 536, 557, 872, 888, 1300
ZrmI	AGTACT	2 cut(s)	459, 479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.