Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0016739

Physical Location & Seq

Genomic Coordinates Forward (+)

55440219 .. 55441522

Gene Structure 1304 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00122360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

ATGATGTGCATACCTGAGCTGTTTATATGCCCAATTAGTCTGGAGCTGTTCAAAGATCCAGTGACTCTATGCACAGGCCTAACCTATGACAGGTCGAGCATTCAACAATGGCTGGCTGCTGGTAATCTGACATGTCCAGTCACAATGCAGAAGCTTGATGATCCAATCACCATGGTTCCGAATCACACTCTTCGCCATTTGATCACTCAGTGGCTGCAAATGGGTAGTCGAACTCAAAACTCGAATCATTCTGATGATCATTGTCACTTGGAAACCACAACTACTGATTCTTTAGCTTCACTCAAACACATACTGGAGTCTCAACAAGGTTCAAGCACTCGAAAAGATTTCATCTTCACCGTCCACAAATTACTTGCTACTGCAGCTCGGGTACTTGTTTTGCTACTGGAACTAGTCTTTGGACTAGTTCCAGAAGCCAGAGTACTACTCGTCAGTGAAGAGTACTACTACATCAAGTTTGTTGAGCTTGCGCTCTCTCGTGTTCTGATACTACTGCCTCTAGGGGGTGGGTTCGAGCCTCTAAATATTTTGAAAGAAGAGAGTAAATTGTCATCTTTCGAAGTCTTGTTGGCGGGCGGCTCTGCATTCATCAGAATCAACTTGTGCCGCCTTATAGAGGCAGTTTCAGCATCAGAGAGCAGCAGCAGCAGCACAAAAGGGCTGCGTGTTGTTCTTGGAAAGAACCAGGGGATCTTGACTCAACTGGTTCAGCTAATTCTTCACCCGAGTGATTCGGAGGAGGAGGCTGCCGATGCTGCAATCAGAGCCGTGTCAGCATTGTCTTCCTTTGAAGATAACATAGAGTCTTTGGTCAGAAATGGCATGTTAAATGGACTAGTGACATACATTACTAGGACCGAAAAGCGCGAAAGAAGCTTGGCGCCATTGGCAACGGCGATAATTGAGAGGCTTTTAGGAGTAGAGAGTGGAAAAGAGGAATTGCTTAATAGTAATAACAATAACGGCACCGGTGGCAATGGCATTCATGCTCTTGTTAAGATGGTTTTCAGGGTATCGTGGTCCAATGTTGATGATGACCATGAACACCACCGAGGGAGTGAGAGTGCCGTTACCTCACTTTTGATTGTGTGCACTGATTCTTTATCGGCACGAGAGGAAGCCATTAGCGCCGGAATATTGACTCAGTTACTATTGCTTATGCAGAGCCAGTGCAGCAATAGCACCAAAGCGAAGGCGAGAATGTTACTCAAACTCCTTAGAACCAAGTGGTCTCAGGACTCCAAGCAATTAATCTCAATGGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009814 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0098542 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

U-box

Protein Analysis

428

Amino Acids

47.09

Weight (kDa)

5.97

Isoelectric Point (pI)

47.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
U-box	PF04564	4 - 73	2.2e-17	U-box domain
ARM_PUB	PF25598	182 - 420	2.2e-26	Plant U-box protein ARM repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016739)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g24450
malus_domestica	MD01G1005300.v1.1
prunus_persica	Prupe.4G271800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0121551
rosa_laevigata	RLG00000018625
rosa_multiflora	Rmu_sc0000315.1_g000027 Rmu_sc0007658.1_g000009
rosa_roxburghii	Rroxscaffold_2G00122360
rosa_rugosa	Rorug02G0233700
rosa_samantha	Rh2AG290500 Rh2BG301300 Rh2CG280000 Rh2DG315200
rosa_wichuraiana	Rw2G023300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	901, 986
AccII	CGCG	1 cut(s)	888
AciI	CCGC	3 cut(s)	593, 597, 628
AclWI	GGATC	3 cut(s)	50, 155, 719
AcyI	GRCGYC	1 cut(s)	902
AdeI	CACNNNGTG	1 cut(s)	210
AfaI	GTAC	3 cut(s)	393, 444, 464
AfiI	CCNNNNNNNGG	3 cut(s)	90, 524, 637
AflIII	ACRYGT	1 cut(s)	131
AgeI	ACCGGT	1 cut(s)	989
AgsI	TTSAA	5 cut(s)	52, 104, 333, 553, 812
AhlI	ACTAGT	3 cut(s)	412, 424, 856
AjnI	CCWGG	1 cut(s)	705
AjuI	GAANNNNNNNTTGG	2 cut(s)	402, 434
AleI	CACNNNNGTG	1 cut(s)	747
AluBI	AGCT	8 cut(s)	19, 46, 154, 296, 386, 487, 733, 897
AluI	AGCT	8 cut(s)	19, 46, 154, 296, 386, 487, 733, 897
Alw21I	GWGCWC	1 cut(s)	1115
Alw26I	GTCTC	2 cut(s)	324, 1257
Alw44I	GTGCAC	1 cut(s)	1111
AlwI	GGATC	3 cut(s)	50, 155, 719
AlwNI	CAGNNNCTG	1 cut(s)	214
Ama87I	CYCGRG	2 cut(s)	387, 745
AoxI	GGCC	1 cut(s)	76
ApaLI	GTGCAC	1 cut(s)	1111
ArsI	GACNNNNNNTTYG	2 cut(s)	211, 243
AseI	ATTAAT	1 cut(s)	1271
AsiGI	ACCGGT	1 cut(s)	989
AspLEI	GCGC	4 cut(s)	493, 888, 904, 1151
AspS9I	GGNCC	2 cut(s)	876, 1041
AsuHPI	GGTGA	3 cut(s)	160, 349, 734
AsuII	TTCGAA	1 cut(s)	579
AvaI	CYCGRG	2 cut(s)	387, 745
AvaII	GGWCC	2 cut(s)	876, 1041
BaeGI	GKGCMC	1 cut(s)	1115
BanI	GGYRCC	2 cut(s)	901, 986
BarI	GAAGNNNNNNTAC	2 cut(s)	426, 458
BauI	CACGAG	2 cut(s)	498, 1131
BbsI	GAAGAC	1 cut(s)	795
Bbv12I	GWGCWC	1 cut(s)	1115
BccI	CCATC	1 cut(s)	1015
BceAI	ACGGC	4 cut(s)	773, 930, 1000, 1073
BciT130I	CCWGG	1 cut(s)	707
BclI	TGATCA	2 cut(s)	201, 256
BcoDI	GTCTC	2 cut(s)	324, 1257
BcuI	ACTAGT	3 cut(s)	412, 424, 856
BfaI	CTAG	6 cut(s)	413, 425, 521, 857, 873, 1285
BfmI	CTRYAG	1 cut(s)	381
BfoI	RGCGCY	2 cut(s)	905, 1152
BmcAI	AGTACT	2 cut(s)	444, 464
Bme1390I	CCNGG	1 cut(s)	707
Bme18I	GGWCC	2 cut(s)	876, 1041
BmeT110I	CYCGRG	2 cut(s)	387, 745
BmgT120I	GGNCC	2 cut(s)	876, 1041
BmiI	GGNNCC	3 cut(s)	177, 903, 988
BmrFI	CCNGG	1 cut(s)	707
BmsI	GCATC	2 cut(s)	659, 763
BpiI	GAAGAC	1 cut(s)	795
BplI	GAGNNNNNCTC	2 cut(s)	432, 464
BpmI	CTGGAG	2 cut(s)	62, 335
Bpu10I	CCTNAGC	1 cut(s)	15
Bpu14I	TTCGAA	1 cut(s)	579
BsaHI	GRCGYC	1 cut(s)	902
BsaI	GGTCTC	1 cut(s)	1257
BsaJI	CCNNGG	3 cut(s)	171, 706, 1072
BsaWI	WCCGGW	1 cut(s)	989
BsaXI	ACNNNNNCTCC	4 cut(s)	1069, 1099, 1218, 1248
Bsc4I	CCNNNNNNNGG	3 cut(s)	90, 524, 637
Bse118I	RCCGGY	1 cut(s)	989
Bse1I	ACTGG	6 cut(s)	59, 137, 318, 411, 729, 1189
Bse3DI	GCAATG	1 cut(s)	1003
BseBI	CCWGG	1 cut(s)	707
BseDI	CCNNGG	3 cut(s)	171, 706, 1072
BseLI	CCNNNNNNNGG	3 cut(s)	90, 524, 637
BseMI	GCAATG	1 cut(s)	1003
BseMII	CTCAG	4 cut(s)	6, 221, 1178, 1268
BseNI	ACTGG	6 cut(s)	59, 137, 318, 411, 729, 1189
BseRI	GAGGAG	2 cut(s)	773, 776
BseSI	GKGCMC	1 cut(s)	1115
BsgI	GTGCAG	1 cut(s)	1213
Bsh1236I	CGCG	1 cut(s)	888
BshFI	GGCC	1 cut(s)	78
BshNI	GGYRCC	2 cut(s)	901, 986
BshTI	ACCGGT	1 cut(s)	989
BsiHKAI	GWGCWC	1 cut(s)	1115
BsiHKCI	CYCGRG	2 cut(s)	387, 745
BsiSI	CCGG	2 cut(s)	990, 1152
BslI	CCNNNNNNNGG	3 cut(s)	90, 524, 637
BsmAI	GTCTC	2 cut(s)	324, 1257
BsmI	GAATGC	3 cut(s)	99, 605, 1002
BsnI	GGCC	1 cut(s)	78
Bso31I	GGTCTC	1 cut(s)	1257
BsoBI	CYCGRG	2 cut(s)	387, 745
Bsp119I	TTCGAA	1 cut(s)	579
Bsp1286I	GDGCHC	1 cut(s)	1115
Bsp143I	GATC	5 cut(s)	55, 160, 201, 256, 711
Bsp19I	CCATGG	1 cut(s)	171
BspACI	CCGC	3 cut(s)	593, 597, 628
BspANI	GGCC	1 cut(s)	78
BspCNI	CTCAG	4 cut(s)	7, 220, 1177, 1267
BspFNI	CGCG	1 cut(s)	888
BspLI	GGNNCC	3 cut(s)	177, 903, 988
BspMAI	CTGCAG	1 cut(s)	385
BspPI	GGATC	3 cut(s)	50, 155, 719
BspT104I	TTCGAA	1 cut(s)	579
BspT107I	GGYRCC	2 cut(s)	901, 986
BspTNI	GGTCTC	1 cut(s)	1257
BsrDI	GCAATG	1 cut(s)	1003
BsrFI	RCCGGY	1 cut(s)	989
BsrI	ACTGG	6 cut(s)	59, 137, 318, 411, 729, 1189
BssAI	RCCGGY	1 cut(s)	989
BssECI	CCNNGG	3 cut(s)	171, 706, 1072
BssMI	GATC	5 cut(s)	55, 160, 201, 256, 711
BssNI	GRCGYC	1 cut(s)	902
BssSI	CACGAG	2 cut(s)	498, 1131
BssT1I	CCWWGG	1 cut(s)	171
Bst2BI	CACGAG	2 cut(s)	498, 1131
Bst2UI	CCWGG	1 cut(s)	707
Bst4CI	ACNGT	1 cut(s)	361
Bst6I	CTCTTC	3 cut(s)	195, 453, 552
BstACI	GRCGYC	1 cut(s)	902
BstBI	TTCGAA	1 cut(s)	579
BstC8I	GCNNGC	3 cut(s)	114, 489, 595
BstDEI	CTNAG	5 cut(s)	15, 207, 1164, 1238, 1254
BstDSI	CCRYGG	1 cut(s)	171
BstENI	CCTNNNNNAGG	2 cut(s)	88, 635
BstFNI	CGCG	1 cut(s)	888
BstH2I	RGCGCY	2 cut(s)	905, 1152
BstHHI	GCGC	4 cut(s)	493, 888, 904, 1151
BstKTI	GATC	5 cut(s)	58, 163, 204, 259, 714
BstMAI	GTCTC	2 cut(s)	324, 1257
BstMBI	GATC	5 cut(s)	55, 160, 201, 256, 711
BstNI	CCWGG	1 cut(s)	707
BstNSI	RCATGY	2 cut(s)	135, 847
BstSCI	CCNGG	1 cut(s)	705
BstSFI	CTRYAG	1 cut(s)	381
BstSLI	GKGCMC	1 cut(s)	1115
BstUI	CGCG	1 cut(s)	888
BstV2I	GAAGAC	1 cut(s)	795
BstX2I	RGATCY	2 cut(s)	55, 711
BstYI	RGATCY	2 cut(s)	55, 711
BsuRI	GGCC	1 cut(s)	78
BtgI	CCRYGG	1 cut(s)	171
BtsIMutI	CAGTG	5 cut(s)	66, 215, 460, 1113, 1196
Cac8I	GCNNGC	3 cut(s)	114, 489, 595
CaiI	CAGNNNCTG	1 cut(s)	214
CfoI	GCGC	4 cut(s)	493, 888, 904, 1151
Cfr10I	RCCGGY	1 cut(s)	989
Cfr13I	GGNCC	2 cut(s)	876, 1041
Csp6I	GTAC	3 cut(s)	392, 443, 463
CspAI	ACCGGT	1 cut(s)	989
CviAII	CATG	5 cut(s)	132, 172, 844, 1007, 1061
CviQI	GTAC	3 cut(s)	392, 443, 463
DdeI	CTNAG	5 cut(s)	15, 207, 1164, 1238, 1254
DinI	GGCGCC	1 cut(s)	903
DpnI	GATC	5 cut(s)	57, 162, 203, 258, 713
DpnII	GATC	5 cut(s)	55, 160, 201, 256, 711
DraIII	CACNNNGTG	1 cut(s)	210
Eam1104I	CTCTTC	3 cut(s)	195, 453, 552
EarI	CTCTTC	3 cut(s)	195, 453, 552
Eco130I	CCWWGG	1 cut(s)	171
Eco147I	AGGCCT	1 cut(s)	78
Eco31I	GGTCTC	1 cut(s)	1257
Eco47I	GGWCC	2 cut(s)	876, 1041
Eco88I	CYCGRG	2 cut(s)	387, 745
EcoNI	CCTNNNNNAGG	2 cut(s)	88, 635
EcoRII	CCWGG	1 cut(s)	705
EcoT14I	CCWWGG	1 cut(s)	171
EgeI	GGCGCC	1 cut(s)	903
EheI	GGCGCC	1 cut(s)	903
ErhI	CCWWGG	1 cut(s)	171
FaeI	CATG	5 cut(s)	135, 175, 847, 1010, 1064
FatI	CATG	5 cut(s)	131, 171, 843, 1006, 1060
FauI	CCCGC	1 cut(s)	586
FbaI	TGATCA	2 cut(s)	201, 256
FspBI	CTAG	6 cut(s)	413, 425, 521, 857, 873, 1285
GlaI	GCGC	4 cut(s)	492, 887, 903, 1150
GsuI	CTGGAG	2 cut(s)	62, 335
HaeII	RGCGCY	2 cut(s)	905, 1152
HaeIII	GGCC	1 cut(s)	78
HapII	CCGG	2 cut(s)	990, 1152
HhaI	GCGC	4 cut(s)	493, 888, 904, 1151
Hin1I	GRCGYC	1 cut(s)	902
Hin1II	CATG	5 cut(s)	135, 175, 847, 1010, 1064
Hin6I	GCGC	4 cut(s)	491, 886, 902, 1149
HinP1I	GCGC	4 cut(s)	491, 886, 902, 1149
HindIII	AAGCTT	2 cut(s)	152, 895
HpaII	CCGG	2 cut(s)	990, 1152
HphI	GGTGA	3 cut(s)	160, 349, 734
Hpy166II	GTNNAC	2 cut(s)	364, 1113
Hpy188I	TCNGA	9 cut(s)	129, 180, 253, 507, 614, 655, 757, 785, 836
Hpy188III	TCNNGA	4 cut(s)	41, 431, 715, 1256
Hpy8I	GTNNAC	2 cut(s)	364, 1113
HpyAV	CCTTC	1 cut(s)	1207
HpyCH4III	ACNGT	1 cut(s)	361
HpyF3I	CTNAG	5 cut(s)	15, 207, 1164, 1238, 1254
Hsp92I	GRCGYC	1 cut(s)	902
Hsp92II	CATG	5 cut(s)	135, 175, 847, 1010, 1064
HspAI	GCGC	4 cut(s)	491, 886, 902, 1149
KasI	GGCGCC	1 cut(s)	901
Ksp22I	TGATCA	2 cut(s)	201, 256
Kzo9I	GATC	5 cut(s)	55, 160, 201, 256, 711
LmnI	GCTCC	1 cut(s)	43
LweI	GCATC	2 cut(s)	659, 763
MaeI	CTAG	6 cut(s)	413, 425, 521, 857, 873, 1285
MaeIII	GTNAC	7 cut(s)	61, 139, 263, 859, 1090, 1167, 1224
MalI	GATC	5 cut(s)	57, 162, 203, 258, 713
MboI	GATC	5 cut(s)	55, 160, 201, 256, 711
MboII	GAAGA	7 cut(s)	182, 346, 470, 569, 731, 795, 824
MflI	RGATCY	2 cut(s)	55, 711
MhlI	GDGCHC	1 cut(s)	1115
MluCI	AATT	7 cut(s)	33, 368, 566, 735, 921, 959, 1268
Mly113I	GGCGCC	1 cut(s)	902
MlyI	GAGTC	6 cut(s)	58, 326, 712, 833, 1156, 1253
MseI	TTAA	4 cut(s)	848, 966, 1017, 1271
MslI	CAYNNNNRTG	2 cut(s)	252, 747
MspI	CCGG	2 cut(s)	990, 1152
MspR9I	CCNGG	1 cut(s)	707
Mva1269I	GAATGC	3 cut(s)	99, 605, 1002
MvaI	CCWGG	1 cut(s)	707
MvnI	CGCG	1 cut(s)	888
NarI	GGCGCC	1 cut(s)	902
NcoI	CCATGG	1 cut(s)	171
NdeII	GATC	5 cut(s)	55, 160, 201, 256, 711
NlaIII	CATG	5 cut(s)	135, 175, 847, 1010, 1064
NlaIV	GGNNCC	3 cut(s)	177, 903, 988
NmuCI	GTSAC	4 cut(s)	61, 139, 263, 859
NspI	RCATGY	2 cut(s)	135, 847
NspV	TTCGAA	1 cut(s)	579
OliI	CACNNNNGTG	1 cut(s)	747
PceI	AGGCCT	1 cut(s)	78
PciI	ACATGT	1 cut(s)	131
PctI	GAATGC	3 cut(s)	99, 605, 1002
PfeI	GAWTC	6 cut(s)	181, 244, 287, 615, 752, 1118
PinAI	ACCGGT	1 cut(s)	989
PleI	GAGTC	6 cut(s)	58, 325, 712, 832, 1156, 1253
PluTI	GGCGCC	1 cut(s)	905
PpsI	GAGTC	6 cut(s)	58, 325, 712, 832, 1156, 1253
PscI	ACATGT	1 cut(s)	131
PshBI	ATTAAT	1 cut(s)	1271
Psp6I	CCWGG	1 cut(s)	705
PspGI	CCWGG	1 cut(s)	705
PspN4I	GGNNCC	3 cut(s)	177, 903, 988
PspPI	GGNCC	2 cut(s)	876, 1041
PstI	CTGCAG	1 cut(s)	385
PstNI	CAGNNNCTG	1 cut(s)	214
PsuI	RGATCY	2 cut(s)	55, 711
RsaI	GTAC	3 cut(s)	393, 444, 464
RsaNI	GTAC	3 cut(s)	392, 443, 463
RseI	CAYNNNNRTG	2 cut(s)	252, 747
SaqAI	TTAA	4 cut(s)	848, 966, 1017, 1271
Sau3AI	GATC	5 cut(s)	55, 160, 201, 256, 711
Sau96I	GGNCC	2 cut(s)	876, 1041
ScaI	AGTACT	2 cut(s)	444, 464
SchI	GAGTC	6 cut(s)	58, 326, 712, 833, 1156, 1253
ScrFI	CCNGG	1 cut(s)	707
SduI	GDGCHC	1 cut(s)	1115
SfaNI	GCATC	2 cut(s)	659, 763
SfcI	CTRYAG	1 cut(s)	381
SfoI	GGCGCC	1 cut(s)	903
SfuI	TTCGAA	1 cut(s)	579
SgrAI	CRCCGGYG	1 cut(s)	989
SinI	GGWCC	2 cut(s)	876, 1041
SmiMI	CAYNNNNRTG	2 cut(s)	252, 747
SpeI	ACTAGT	3 cut(s)	412, 424, 856
Sse9I	AATT	7 cut(s)	33, 368, 566, 735, 921, 959, 1268
SseBI	AGGCCT	1 cut(s)	78
SsiI	CCGC	3 cut(s)	593, 597, 628
SspDI	GGCGCC	1 cut(s)	901
SspI	AATATT	2 cut(s)	547, 1158
SspMI	CTAG	6 cut(s)	413, 425, 521, 857, 873, 1285
StuI	AGGCCT	1 cut(s)	78
StyD4I	CCNGG	1 cut(s)	705
StyI	CCWWGG	1 cut(s)	171
TaaI	ACNGT	1 cut(s)	361
TaqI	TCGA	6 cut(s)	95, 229, 242, 340, 534, 579
TaqII	GACCGA	1 cut(s)	893
TasI	AATT	7 cut(s)	33, 368, 566, 735, 921, 959, 1268
TatI	WGTACW	2 cut(s)	442, 462
TauI	GCSGC	2 cut(s)	600, 630
TfiI	GAWTC	6 cut(s)	181, 244, 287, 615, 752, 1118
Tru1I	TTAA	4 cut(s)	848, 966, 1017, 1271
Tru9I	TTAA	4 cut(s)	848, 966, 1017, 1271
TscAI	CASTG	5 cut(s)	66, 215, 460, 1120, 1196
TseFI	GTSAC	4 cut(s)	61, 139, 263, 859
Tsp45I	GTSAC	4 cut(s)	61, 139, 263, 859
TspDTI	ATGAA	4 cut(s)	340, 598, 995, 1077
TspRI	CASTG	5 cut(s)	66, 215, 460, 1120, 1196
VneI	GTGCAC	1 cut(s)	1111
VpaK11BI	GGWCC	2 cut(s)	876, 1041
VspI	ATTAAT	1 cut(s)	1271
XagI	CCTNNNNNAGG	2 cut(s)	88, 635
XceI	RCATGY	2 cut(s)	135, 847
XspI	CTAG	6 cut(s)	413, 425, 521, 857, 873, 1285
ZrmI	AGTACT	2 cut(s)	444, 464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.