Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0016739

Physical Location & Seq

Genomic Coordinates Reverse (-)

22293837 .. 22295223

Gene Structure 1387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G271800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGACCATTCCCCACTTGTTCAGATGCCCAATTAGCCTGGACTTGTTCAAAGATCCAGTCACTCTATGCACAGGTCAAACTTATGACAGGCCAAGCATAGAAAAATGGCTGGCTGCAGGCAATCTCACATGTCCAGTCACAATGCAGAAACTTGATGATCCAGCCCTTGTGCCTAATCACACTCTTCGCCATTTCATCAATCAGTGGCTGCAAATGGGCAACCAATTTGATCCTGATTACTTGGAAACAATTGGTTCTTTAGCTTCACTCAAACACACCCTTGAATCCCATGAGGTTACCTTAAAAAGCAAGGTTCAAGCACTCGAAAAGATTCGAGCTTTGTCCCAATCAGAATCACCGTACACAAGTAATTTGTTCCTGCAGTTGGGATTCTTGCCTCTACTTCTAGAACTTGTGTTTGGAGGAGAAGAAGCCATACACAAACAGAAACTGAAACAGCAACTCCCTCAAGAGTGCTACTATATGAAGTTTGTGGAGGATGCACTTTCTTGCACTCTAATTCTGCTACCTCACGGCAAATTGGAGTCTCTGAATATGCTCAGAGAAGAGAGCAAATTAGCATCCTTCCAAGCTTTATTTGCTCACGGCACCGCCTTGATCAGGATGAGTTTGTGCCGTCTCATAGAGGTAACATCAACATCCCCGGAGACAAAAGAACTCTGTTATATGTTTGGAAAGAACCATCAGCTCTTGCATCGGATATCGGTTCAGTTGCTTCAACAGAATTCAAATTCAGAGACTGCAGATGCTGGAATCAAAGCCATATCAACATTAACTTCCTTGGAAGAAAACAGAGAGATTCTGGTCCGACAAGGCGTGGTAAACGGACTCATAACATATATCAATTCAAGCACAGAGAGACGCGAAAGAAGCTTGGCACCATTGGCAATGGCCACACTTGAGAAGCTTCTAGGATTAGAGAGTGCAAAAGAGGCAGTGATTAATTATAACAATAACAATAATAATAATAATAATTTGAATGGCGTTCATGCTCTTGTAAAGATGGTTTTCAGGGTTTCGGATGATCACCAAGGCAGTGAGAGTGCCGTTGGGTGTCTAATAATTCTATGCAATGACTCTTTATTGGCACGAGAAGAAGCCATCAGGGGTGGAGTGTTGACTCAGTTGCTATTGCTGCTGCAGAGCCAGTGCAGTGGCCGGACCAAAACAAAGGCAAGAATGCTGCTCAAGCTCCTCAGAAGAACCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009814 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0098542 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

U-box

Protein Analysis

411

Amino Acids

45.95

Weight (kDa)

7.6

Isoelectric Point (pI)

48.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016739)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g24450
malus_domestica	MD01G1005300.v1.1
prunus_persica	Prupe.4G271800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0121551
rosa_laevigata	RLG00000018625
rosa_multiflora	Rmu_sc0000315.1_g000027 Rmu_sc0007658.1_g000009
rosa_roxburghii	Rroxscaffold_2G00122360
rosa_rugosa	Rorug02G0233700
rosa_samantha	Rh2AG290500 Rh2BG301300 Rh2CG280000 Rh2DG315200
rosa_wichuraiana	Rw2G023300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	969
AccB1I	GGYRCC	2 cut(s)	608, 898
AccII	CGCG	1 cut(s)	885
AciI	CCGC	1 cut(s)	612
AclWI	GGATC	3 cut(s)	47, 152, 224
AcoI	YGGCCR	2 cut(s)	912, 1177
AcsI	RAATTY	2 cut(s)	745, 751
AfaI	GTAC	1 cut(s)	362
AfiI	CCNNNNNNNGG	2 cut(s)	385, 621
AflIII	ACRYGT	1 cut(s)	128
AgsI	TTSAA	7 cut(s)	49, 284, 317, 740, 750, 870, 1000
AjnI	CCWGG	1 cut(s)	36
AjuI	GAANNNNNNNTTGG	2 cut(s)	402, 434
AluBI	AGCT	7 cut(s)	263, 338, 593, 709, 894, 928, 1213
AluI	AGCT	7 cut(s)	263, 338, 593, 709, 894, 928, 1213
Alw26I	GTCTC	5 cut(s)	552, 644, 662, 752, 874
AlwI	GGATC	3 cut(s)	47, 152, 224
AlwNI	CAGNNNCTG	4 cut(s)	208, 451, 761, 770
AoxI	GGCC	3 cut(s)	89, 912, 1177
ApeKI	GCWGC	5 cut(s)	113, 208, 1156, 1159, 1204
ApoI	RAATTY	2 cut(s)	745, 751
ArsI	GACNNNNNNTTYG	2 cut(s)	42, 74
AseI	ATTAAT	1 cut(s)	963
Asp700I	GAANNNNTTC	1 cut(s)	330
AspS9I	GGNCC	2 cut(s)	826, 1182
AsuC2I	CCSGG	1 cut(s)	665
AsuHPI	GGTGA	2 cut(s)	348, 1040
AvaII	GGWCC	2 cut(s)	826, 1182
BalI	TGGCCA	1 cut(s)	914
BanI	GGYRCC	2 cut(s)	608, 898
BarI	GAAGNNNNNNTAC	2 cut(s)	420, 452
BauI	CACGAG	1 cut(s)	1110
BbvI	GCAGC	5 cut(s)	100, 195, 1143, 1146, 1191
BccI	CCATC	3 cut(s)	711, 1018, 1130
BceAI	ACGGC	4 cut(s)	550, 621, 622, 1052
BciT130I	CCWGG	1 cut(s)	38
BclI	TGATCA	2 cut(s)	618, 1045
BcnI	CCSGG	1 cut(s)	665
BcoDI	GTCTC	5 cut(s)	552, 644, 662, 752, 874
BfaI	CTAG	3 cut(s)	407, 932, 1231
BfmI	CTRYAG	4 cut(s)	114, 380, 762, 1160
BisI	GCNGC	5 cut(s)	114, 209, 1157, 1160, 1205
BlsI	GCNGC	5 cut(s)	115, 210, 1158, 1161, 1206
Bme1390I	CCNGG	2 cut(s)	38, 665
Bme18I	GGWCC	2 cut(s)	826, 1182
BmgT120I	GGNCC	2 cut(s)	826, 1182
BmiI	GGNNCC	2 cut(s)	610, 900
BmrFI	CCNGG	2 cut(s)	38, 665
BmsI	GCATC	5 cut(s)	14, 490, 590, 724, 757
BpuEI	CTTGAG	3 cut(s)	453, 941, 1193
BpuMI	CCSGG	1 cut(s)	665
BsaJI	CCNNGG	3 cut(s)	663, 801, 1051
BsaXI	ACNNNNNCTCC	2 cut(s)	447, 477
Bsc4I	CCNNNNNNNGG	2 cut(s)	385, 621
Bse1I	ACTGG	3 cut(s)	56, 134, 1168
Bse3DI	GCAATG	2 cut(s)	915, 1099
BseBI	CCWGG	1 cut(s)	38
BseDI	CCNNGG	3 cut(s)	663, 801, 1051
BseGI	GGATG	5 cut(s)	505, 581, 630, 659, 1048
BseLI	CCNNNNNNNGG	2 cut(s)	385, 621
BseMI	GCAATG	2 cut(s)	915, 1099
BseMII	CTCAG	3 cut(s)	574, 1157, 1231
BseNI	ACTGG	3 cut(s)	56, 134, 1168
BseRI	GAGGAG	2 cut(s)	438, 1205
BseXI	GCAGC	5 cut(s)	100, 195, 1143, 1146, 1191
BsgI	GTGCAG	1 cut(s)	1192
Bsh1236I	CGCG	1 cut(s)	885
BshFI	GGCC	3 cut(s)	91, 914, 1179
BshNI	GGYRCC	2 cut(s)	608, 898
BsiSI	CCGG	2 cut(s)	665, 1180
BslFI	GGGAC	1 cut(s)	328
BslI	CCNNNNNNNGG	2 cut(s)	385, 621
BsmAI	GTCTC	5 cut(s)	552, 644, 662, 752, 874
BsmBI	CGTCTC	2 cut(s)	644, 874
BsmFI	GGGAC	1 cut(s)	328
BsmI	GAATGC	1 cut(s)	1206
BsnI	GGCC	3 cut(s)	91, 914, 1179
Bsp143I	GATC	5 cut(s)	52, 157, 229, 618, 1045
BspACI	CCGC	1 cut(s)	612
BspANI	GGCC	3 cut(s)	91, 914, 1179
BspCNI	CTCAG	3 cut(s)	573, 1156, 1230
BspFNI	CGCG	1 cut(s)	885
BspLI	GGNNCC	2 cut(s)	610, 900
BspMAI	CTGCAG	4 cut(s)	118, 384, 766, 1164
BspPI	GGATC	3 cut(s)	47, 152, 224
BspT107I	GGYRCC	2 cut(s)	608, 898
BsrDI	GCAATG	2 cut(s)	915, 1099
BsrI	ACTGG	3 cut(s)	56, 134, 1168
BssECI	CCNNGG	3 cut(s)	663, 801, 1051
BssMI	GATC	5 cut(s)	52, 157, 229, 618, 1045
BssSI	CACGAG	1 cut(s)	1110
BssT1I	CCWWGG	2 cut(s)	801, 1051
Bst2BI	CACGAG	1 cut(s)	1110
Bst2UI	CCWGG	1 cut(s)	38
Bst4CI	ACNGT	1 cut(s)	360
Bst6I	CTCTTC	2 cut(s)	189, 561
BstC8I	GCNNGC	2 cut(s)	111, 118
BstDEI	CTNAG	3 cut(s)	560, 1143, 1217
BstEII	GGTNACC	1 cut(s)	295
BstENI	CCTNNNNNAGG	1 cut(s)	619
BstF5I	GGATG	5 cut(s)	505, 581, 630, 659, 1048
BstFNI	CGCG	1 cut(s)	885
BstKTI	GATC	5 cut(s)	55, 160, 232, 621, 1048
BstMAI	GTCTC	5 cut(s)	552, 644, 662, 752, 874
BstMBI	GATC	5 cut(s)	52, 157, 229, 618, 1045
BstMWI	GCNNNNNNNGC	7 cut(s)	33, 599, 891, 905, 953, 1156, 1210
BstNI	CCWGG	1 cut(s)	38
BstNSI	RCATGY	1 cut(s)	132
BstPI	GGTNACC	1 cut(s)	295
BstSCI	CCNGG	2 cut(s)	36, 663
BstSFI	CTRYAG	4 cut(s)	114, 380, 762, 1160
BstUI	CGCG	1 cut(s)	885
BstV1I	GCAGC	5 cut(s)	100, 195, 1143, 1146, 1191
BstX2I	RGATCY	1 cut(s)	52
BstXI	CCANNNNNNTGG	1 cut(s)	1175
BstYI	RGATCY	1 cut(s)	52
BsuRI	GGCC	3 cut(s)	91, 914, 1179
BtsCI	GGATG	5 cut(s)	505, 581, 630, 659, 1048
BtsI	GCAGTG	3 cut(s)	963, 1063, 1180
BtsIMutI	CAGTG	5 cut(s)	209, 963, 1063, 1175, 1180
Cac8I	GCNNGC	2 cut(s)	111, 118
CaiI	CAGNNNCTG	4 cut(s)	208, 451, 761, 770
Cfr13I	GGNCC	2 cut(s)	826, 1182
CseI	GACGC	1 cut(s)	891
Csp6I	GTAC	1 cut(s)	361
CviAII	CATG	3 cut(s)	129, 290, 1010
CviQI	GTAC	1 cut(s)	361
DdeI	CTNAG	3 cut(s)	560, 1143, 1217
DpnI	GATC	5 cut(s)	54, 159, 231, 620, 1047
DpnII	GATC	5 cut(s)	52, 157, 229, 618, 1045
EaeI	YGGCCR	2 cut(s)	912, 1177
Eam1104I	CTCTTC	2 cut(s)	189, 561
EarI	CTCTTC	2 cut(s)	189, 561
Eco130I	CCWWGG	2 cut(s)	801, 1051
Eco32I	GATATC	1 cut(s)	723
Eco47I	GGWCC	2 cut(s)	826, 1182
Eco91I	GGTNACC	1 cut(s)	295
EcoNI	CCTNNNNNAGG	1 cut(s)	619
EcoO65I	GGTNACC	1 cut(s)	295
EcoRI	GAATTC	1 cut(s)	745
EcoRII	CCWGG	1 cut(s)	36
EcoRV	GATATC	1 cut(s)	723
EcoT14I	CCWWGG	2 cut(s)	801, 1051
ErhI	CCWWGG	2 cut(s)	801, 1051
Esp3I	CGTCTC	2 cut(s)	644, 874
FaeI	CATG	3 cut(s)	132, 293, 1013
FaqI	GGGAC	1 cut(s)	328
FatI	CATG	3 cut(s)	128, 289, 1009
FbaI	TGATCA	2 cut(s)	618, 1045
Fnu4HI	GCNGC	5 cut(s)	114, 209, 1157, 1160, 1205
FokI	GGATG	5 cut(s)	512, 568, 637, 646, 1055
Fsp4HI	GCNGC	5 cut(s)	114, 209, 1157, 1160, 1205
FspBI	CTAG	3 cut(s)	407, 932, 1231
GluI	GCNGC	5 cut(s)	114, 209, 1157, 1160, 1205
HaeIII	GGCC	3 cut(s)	91, 914, 1179
HapII	CCGG	2 cut(s)	665, 1180
HgaI	GACGC	1 cut(s)	891
Hin1II	CATG	3 cut(s)	132, 293, 1013
HincII	GTYRAC	1 cut(s)	1140
HindII	GTYRAC	1 cut(s)	1140
HindIII	AAGCTT	3 cut(s)	591, 892, 926
HpaII	CCGG	2 cut(s)	665, 1180
HphI	GGTGA	2 cut(s)	348, 1040
Hpy166II	GTNNAC	3 cut(s)	363, 844, 1140
Hpy188I	TCNGA	9 cut(s)	23, 352, 552, 563, 720, 757, 830, 1042, 1220
Hpy188III	TCNNGA	4 cut(s)	233, 407, 470, 622
Hpy8I	GTNNAC	3 cut(s)	363, 844, 1140
HpyAV	CCTTC	1 cut(s)	595
HpyCH4III	ACNGT	1 cut(s)	360
HpyF10VI	GCNNNNNNNGC	7 cut(s)	33, 599, 891, 905, 953, 1156, 1210
HpyF3I	CTNAG	3 cut(s)	560, 1143, 1217
Hsp92II	CATG	3 cut(s)	132, 293, 1013
Ksp22I	TGATCA	2 cut(s)	618, 1045
Kzo9I	GATC	5 cut(s)	52, 157, 229, 618, 1045
LmnI	GCTCC	1 cut(s)	1218
Lsp1109I	GCAGC	5 cut(s)	100, 195, 1143, 1146, 1191
LweI	GCATC	5 cut(s)	14, 490, 590, 724, 757
MaeI	CTAG	3 cut(s)	407, 932, 1231
MaeIII	GTNAC	4 cut(s)	58, 136, 295, 649
MalI	GATC	5 cut(s)	54, 159, 231, 620, 1047
MboI	GATC	5 cut(s)	52, 157, 229, 618, 1045
MboII	GAAGA	6 cut(s)	176, 440, 578, 818, 1127, 1233
MfeI	CAATTG	1 cut(s)	249
MflI	RGATCY	1 cut(s)	52
MlsI	TGGCCA	1 cut(s)	914
MluNI	TGGCCA	1 cut(s)	914
MlyI	GAGTC	4 cut(s)	554, 843, 1091, 1135
MmeI	TCCRAC	1 cut(s)	853
MnlI	CCTC	9 cut(s)	286, 408, 416, 477, 490, 540, 640, 946, 1226
Mox20I	TGGCCA	1 cut(s)	914
MroXI	GAANNNNTTC	1 cut(s)	330
MscI	TGGCCA	1 cut(s)	914
MseI	TTAA	3 cut(s)	302, 794, 963
Msp20I	TGGCCA	1 cut(s)	914
MspI	CCGG	2 cut(s)	665, 1180
MspR9I	CCNGG	2 cut(s)	38, 665
MunI	CAATTG	1 cut(s)	249
Mva1269I	GAATGC	1 cut(s)	1206
MvaI	CCWGG	1 cut(s)	38
MvnI	CGCG	1 cut(s)	885
MwoI	GCNNNNNNNGC	7 cut(s)	33, 599, 891, 905, 953, 1156, 1210
NciI	CCSGG	1 cut(s)	665
NdeII	GATC	5 cut(s)	52, 157, 229, 618, 1045
NlaIII	CATG	3 cut(s)	132, 293, 1013
NlaIV	GGNNCC	2 cut(s)	610, 900
NmuCI	GTSAC	2 cut(s)	58, 136
NspI	RCATGY	1 cut(s)	132
PciI	ACATGT	1 cut(s)	128
PctI	GAATGC	1 cut(s)	1206
PdmI	GAANNNNTTC	1 cut(s)	330
PfeI	GAWTC	6 cut(s)	284, 331, 353, 390, 774, 820
PkrI	GCNGC	5 cut(s)	115, 210, 1158, 1161, 1206
PleI	GAGTC	4 cut(s)	553, 843, 1091, 1135
PpsI	GAGTC	4 cut(s)	553, 843, 1091, 1135
PscI	ACATGT	1 cut(s)	128
PshBI	ATTAAT	1 cut(s)	963
PsiI	TTATAA	1 cut(s)	969
Psp6I	CCWGG	1 cut(s)	36
PspEI	GGTNACC	1 cut(s)	295
PspGI	CCWGG	1 cut(s)	36
PspN4I	GGNNCC	2 cut(s)	610, 900
PspPI	GGNCC	2 cut(s)	826, 1182
PstI	CTGCAG	4 cut(s)	118, 384, 766, 1164
PstNI	CAGNNNCTG	4 cut(s)	208, 451, 761, 770
PsuI	RGATCY	1 cut(s)	52
RsaI	GTAC	1 cut(s)	362
RsaNI	GTAC	1 cut(s)	361
SaqAI	TTAA	3 cut(s)	302, 794, 963
SatI	GCNGC	5 cut(s)	114, 209, 1157, 1160, 1205
Sau3AI	GATC	5 cut(s)	52, 157, 229, 618, 1045
Sau96I	GGNCC	2 cut(s)	826, 1182
SchI	GAGTC	4 cut(s)	554, 843, 1091, 1135
ScrFI	CCNGG	2 cut(s)	38, 665
SfaNI	GCATC	5 cut(s)	14, 490, 590, 724, 757
SfcI	CTRYAG	4 cut(s)	114, 380, 762, 1160
SinI	GGWCC	2 cut(s)	826, 1182
SmlI	CTYRAG	3 cut(s)	468, 920, 1208
SmoI	CTYRAG	3 cut(s)	468, 920, 1208
SsiI	CCGC	1 cut(s)	612
SspMI	CTAG	3 cut(s)	407, 932, 1231
StyD4I	CCNGG	2 cut(s)	36, 663
StyI	CCWWGG	2 cut(s)	801, 1051
TaaI	ACNGT	1 cut(s)	360
TaqI	TCGA	2 cut(s)	324, 334
TfiI	GAWTC	6 cut(s)	284, 331, 353, 390, 774, 820
Tru1I	TTAA	3 cut(s)	302, 794, 963
Tru9I	TTAA	3 cut(s)	302, 794, 963
TscAI	CASTG	5 cut(s)	209, 963, 1063, 1175, 1180
TseFI	GTSAC	2 cut(s)	58, 136
TseI	GCWGC	5 cut(s)	113, 208, 1156, 1159, 1204
Tsp45I	GTSAC	2 cut(s)	58, 136
TspDTI	ATGAA	3 cut(s)	184, 500, 998
TspGWI	ACGGA	1 cut(s)	861
TspRI	CASTG	5 cut(s)	209, 963, 1063, 1175, 1180
VpaK11BI	GGWCC	2 cut(s)	826, 1182
VspI	ATTAAT	1 cut(s)	963
XagI	CCTNNNNNAGG	1 cut(s)	619
XapI	RAATTY	2 cut(s)	745, 751
XbaI	TCTAGA	1 cut(s)	406
XceI	RCATGY	1 cut(s)	132
XmnI	GAANNNNTTC	1 cut(s)	330
XspI	CTAG	3 cut(s)	407, 932, 1231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.