Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0016739

Physical Location & Seq

Genomic Coordinates Reverse (-)

38925800 .. 38928795

Gene Structure 2996 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG315200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

ATGATGTGCATACCTGAGCTGTTTATATGCCCAATTAGTCTGGAGCTGTTCAAAGATCCAGTGACTCTATGCACAGGCCTAACCTATGACAGGTCGAGCATTCAACAATGGCTGGCTGCTGGTAATCTGACATGTCCAGTCACAATGCAGAAGCTTGATGATCCAATCACCATGGTTCCGAATCACACTCTTCGCCATTTGATCACTCAGTGGCTGCAAATGGGTAGTCAAACTCAAAACTCGAATCATTCTGATGATCATTGTCACTTGGAAACCACAACTACTGATTCTTTAGCTTCACTCAAACACGTACTAGAGTCTCGTGAGTTTGCCTTCGAGAACAAGGTCCAAGCACTCGAAAAGATTTCATCTTCACCGTCCACAAATTACTTGCTACTGCAGCTCGGGTACTTGCCTTTGCTACTGGAACTAGTCTTTGGACTAGTTCCAGAAGCCAGAGTACTACTCATCAGTGAAGAGTACTACTACATCAAGTTTGTTGAGCTTGCGCTGTCTCGTGTTCTGATGCTGCTGCCTCTAGGGGGTGGGTTCGAGCCTCTAAATATTTTGAAAGAAGAGAGTAAATTGTCATCTTTCGAAGTCTTGTTGGCGGGCGGCTCTGCATTCATCAGAATCAACTTGTGCCGCCTTATAGAAGCAGTTTCAGCATCAGAGAGCAGCCGCAGCAGCACAAAAGGGTTGCGTGTTGTTCTTGGAAAGAACCAGGGGATCTTGACTCAGCTGGTTCAGCTAATTCTTCACCAGAGTGATTCGGAGGAGGAGGCTGCAGATGCTGCAATCAGAGCCGTGTCAGCATTGTCTTCCTTTGAAGAAAACATAGAGTCTTTGGTCAGAAATGGCATGTTAAATGGACTAGTGACGTACATTACTAGGACTGAAAAGCGCGAAAGAAGCTTGGCGCCATTGGCAACGGCGATAATTGAGAGGCTTTTAGGAGTAGAGAGTGGAAAAGAGGAATTGCTTAATAGTAATAACAATAATGGCACCAGTGGCAATGGCATTCATGCTCTTGTTAAGATGGTTTTCAGGGTATCGTGGTCCAATGTTGATGATGACCATGAACACCACCGAGGGAGTGAGAGTGCCGTTACCTCACTTTTGATTGTGTGCAATGATTCTTTATCGGCACGAGAGGAAGCCATTAGCGCCGGAGTGTTGACTCAGTTACTATTGCTTATGCAGAGCCAGTGCAGCAATAGCACCAAAGCGAAGGCGAGAATGCTACTCAAACTCCTTAGAACCAAGTGGTCCCAGGACTCCAAGCAATTAATCTCAATGGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009814 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0098542 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

U-box

Protein Analysis

434

Amino Acids

48.0

Weight (kDa)

5.63

Isoelectric Point (pI)

47.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
U-box	PF04564	4 - 73	2.1e-17	U-box domain
ARM_PUB	PF25598	189 - 426	2.8e-26	Plant U-box protein ARM repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016739)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g24450
malus_domestica	MD01G1005300.v1.1
prunus_persica	Prupe.4G271800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0121551
rosa_laevigata	RLG00000018625
rosa_multiflora	Rmu_sc0000315.1_g000027 Rmu_sc0007658.1_g000009
rosa_roxburghii	Rroxscaffold_2G00122360
rosa_rugosa	Rorug02G0233700
rosa_samantha	Rh2AG290500 Rh2BG301300 Rh2CG280000 Rh2DG315200
rosa_wichuraiana	Rw2G023300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	919, 1004
AccII	CGCG	1 cut(s)	906
AciI	CCGC	4 cut(s)	611, 615, 646, 682
AclWI	GGATC	3 cut(s)	50, 155, 737
AcyI	GRCGYC	1 cut(s)	920
AdeI	CACNNNGTG	1 cut(s)	210
AfaI	GTAC	5 cut(s)	312, 410, 462, 482, 884
AfiI	CCNNNNNNNGG	2 cut(s)	90, 542
AflIII	ACRYGT	2 cut(s)	131, 307
AgsI	TTSAA	4 cut(s)	52, 104, 571, 830
AhlI	ACTAGT	3 cut(s)	430, 442, 874
AjnI	CCWGG	2 cut(s)	723, 1272
AjuI	GAANNNNNNNTTGG	2 cut(s)	420, 452
AleI	CACNNNNGTG	1 cut(s)	765
AluBI	AGCT	9 cut(s)	19, 46, 154, 296, 403, 505, 742, 751, 915
AluI	AGCT	9 cut(s)	19, 46, 154, 296, 403, 505, 742, 751, 915
Alw26I	GTCTC	2 cut(s)	324, 519
AlwI	GGATC	3 cut(s)	50, 155, 737
AlwNI	CAGNNNCTG	2 cut(s)	214, 794
Ama87I	CYCGRG	1 cut(s)	404
AoxI	GGCC	1 cut(s)	76
ArsI	GACNNNNNNTTYG	2 cut(s)	211, 243
AseI	ATTAAT	1 cut(s)	1289
AspLEI	GCGC	4 cut(s)	511, 906, 922, 1169
AspS9I	GGNCC	3 cut(s)	346, 1059, 1269
AsuHPI	GGTGA	3 cut(s)	160, 366, 752
AsuII	TTCGAA	1 cut(s)	597
AvaI	CYCGRG	1 cut(s)	404
AvaII	GGWCC	3 cut(s)	346, 1059, 1269
BanI	GGYRCC	2 cut(s)	919, 1004
BarI	GAAGNNNNNNTAC	2 cut(s)	444, 476
BauI	CACGAG	3 cut(s)	321, 516, 1149
BbsI	GAAGAC	1 cut(s)	813
BccI	CCATC	1 cut(s)	1033
BceAI	ACGGC	3 cut(s)	791, 948, 1091
BciT130I	CCWGG	2 cut(s)	725, 1274
BclI	TGATCA	2 cut(s)	201, 256
BcoDI	GTCTC	2 cut(s)	324, 519
BcuI	ACTAGT	3 cut(s)	430, 442, 874
BfaI	CTAG	7 cut(s)	314, 431, 443, 539, 875, 891, 1303
BfmI	CTRYAG	2 cut(s)	398, 786
BfoI	RGCGCY	2 cut(s)	923, 1170
BmcAI	AGTACT	2 cut(s)	462, 482
Bme1390I	CCNGG	2 cut(s)	725, 1274
Bme18I	GGWCC	3 cut(s)	346, 1059, 1269
BmeT110I	CYCGRG	1 cut(s)	404
BmgT120I	GGNCC	3 cut(s)	346, 1059, 1269
BmiI	GGNNCC	4 cut(s)	177, 921, 1006, 1271
BmrFI	CCNGG	2 cut(s)	725, 1274
BmsI	GCATC	3 cut(s)	516, 677, 781
BpiI	GAAGAC	1 cut(s)	813
BplI	GAGNNNNNCTC	2 cut(s)	450, 482
BpmI	CTGGAG	1 cut(s)	62
Bpu10I	CCTNAGC	1 cut(s)	15
Bpu14I	TTCGAA	1 cut(s)	597
BsaAI	YACGTR	1 cut(s)	310
BsaHI	GRCGYC	1 cut(s)	920
BsaJI	CCNNGG	4 cut(s)	171, 724, 1090, 1272
BsaXI	ACNNNNNCTCC	4 cut(s)	1087, 1117, 1236, 1266
Bsc4I	CCNNNNNNNGG	2 cut(s)	90, 542
Bse1I	ACTGG	5 cut(s)	59, 137, 429, 1008, 1207
Bse3DI	GCAATG	2 cut(s)	1021, 1138
BseBI	CCWGG	2 cut(s)	725, 1274
BseDI	CCNNGG	4 cut(s)	171, 724, 1090, 1272
BseLI	CCNNNNNNNGG	2 cut(s)	90, 542
BseMI	GCAATG	2 cut(s)	1021, 1138
BseMII	CTCAG	4 cut(s)	6, 221, 752, 1196
BseNI	ACTGG	5 cut(s)	59, 137, 429, 1008, 1207
BseRI	GAGGAG	2 cut(s)	791, 794
BsgI	GTGCAG	1 cut(s)	1231
Bsh1236I	CGCG	1 cut(s)	906
BshFI	GGCC	1 cut(s)	78
BshNI	GGYRCC	2 cut(s)	919, 1004
BsiHKCI	CYCGRG	1 cut(s)	404
BsiSI	CCGG	1 cut(s)	1170
BslFI	GGGAC	1 cut(s)	1255
BslI	CCNNNNNNNGG	2 cut(s)	90, 542
BsmAI	GTCTC	2 cut(s)	324, 519
BsmFI	GGGAC	1 cut(s)	1255
BsmI	GAATGC	4 cut(s)	99, 623, 1020, 1245
BsnI	GGCC	1 cut(s)	78
BsoBI	CYCGRG	1 cut(s)	404
Bsp119I	TTCGAA	1 cut(s)	597
Bsp143I	GATC	5 cut(s)	55, 160, 201, 256, 729
Bsp19I	CCATGG	1 cut(s)	171
BspACI	CCGC	4 cut(s)	611, 615, 646, 682
BspANI	GGCC	1 cut(s)	78
BspCNI	CTCAG	4 cut(s)	7, 220, 751, 1195
BspFNI	CGCG	1 cut(s)	906
BspLI	GGNNCC	4 cut(s)	177, 921, 1006, 1271
BspMAI	CTGCAG	2 cut(s)	402, 790
BspPI	GGATC	3 cut(s)	50, 155, 737
BspT104I	TTCGAA	1 cut(s)	597
BspT107I	GGYRCC	2 cut(s)	919, 1004
BsrDI	GCAATG	2 cut(s)	1021, 1138
BsrI	ACTGG	5 cut(s)	59, 137, 429, 1008, 1207
BssECI	CCNNGG	4 cut(s)	171, 724, 1090, 1272
BssMI	GATC	5 cut(s)	55, 160, 201, 256, 729
BssNI	GRCGYC	1 cut(s)	920
BssSI	CACGAG	3 cut(s)	321, 516, 1149
BssT1I	CCWWGG	1 cut(s)	171
Bst2BI	CACGAG	3 cut(s)	321, 516, 1149
Bst2UI	CCWGG	2 cut(s)	725, 1274
Bst4CI	ACNGT	1 cut(s)	378
Bst6I	CTCTTC	3 cut(s)	195, 471, 570
BstACI	GRCGYC	1 cut(s)	920
BstAPI	GCANNNNNTGC	1 cut(s)	794
BstBAI	YACGTR	1 cut(s)	310
BstBI	TTCGAA	1 cut(s)	597
BstC8I	GCNNGC	3 cut(s)	114, 507, 613
BstDEI	CTNAG	5 cut(s)	15, 207, 738, 1182, 1256
BstDSI	CCRYGG	1 cut(s)	171
BstENI	CCTNNNNNAGG	1 cut(s)	88
BstFNI	CGCG	1 cut(s)	906
BstH2I	RGCGCY	2 cut(s)	923, 1170
BstHHI	GCGC	4 cut(s)	511, 906, 922, 1169
BstKTI	GATC	5 cut(s)	58, 163, 204, 259, 732
BstMAI	GTCTC	2 cut(s)	324, 519
BstMBI	GATC	5 cut(s)	55, 160, 201, 256, 729
BstNI	CCWGG	2 cut(s)	725, 1274
BstNSI	RCATGY	2 cut(s)	135, 865
BstSCI	CCNGG	2 cut(s)	723, 1272
BstSFI	CTRYAG	2 cut(s)	398, 786
BstUI	CGCG	1 cut(s)	906
BstV2I	GAAGAC	1 cut(s)	813
BstX2I	RGATCY	2 cut(s)	55, 729
BstYI	RGATCY	2 cut(s)	55, 729
BsuRI	GGCC	1 cut(s)	78
BtgI	CCRYGG	1 cut(s)	171
BtsIMutI	CAGTG	5 cut(s)	66, 215, 478, 1015, 1214
Cac8I	GCNNGC	3 cut(s)	114, 507, 613
CaiI	CAGNNNCTG	2 cut(s)	214, 794
CfoI	GCGC	4 cut(s)	511, 906, 922, 1169
Cfr13I	GGNCC	3 cut(s)	346, 1059, 1269
Csp6I	GTAC	5 cut(s)	311, 409, 461, 481, 883
CviAII	CATG	5 cut(s)	132, 172, 862, 1025, 1079
CviQI	GTAC	5 cut(s)	311, 409, 461, 481, 883
DdeI	CTNAG	5 cut(s)	15, 207, 738, 1182, 1256
DinI	GGCGCC	1 cut(s)	921
DpnI	GATC	5 cut(s)	57, 162, 203, 258, 731
DpnII	GATC	5 cut(s)	55, 160, 201, 256, 729
DraIII	CACNNNGTG	1 cut(s)	210
Eam1104I	CTCTTC	3 cut(s)	195, 471, 570
EarI	CTCTTC	3 cut(s)	195, 471, 570
Eco130I	CCWWGG	1 cut(s)	171
Eco147I	AGGCCT	1 cut(s)	78
Eco47I	GGWCC	3 cut(s)	346, 1059, 1269
Eco88I	CYCGRG	1 cut(s)	404
EcoNI	CCTNNNNNAGG	1 cut(s)	88
EcoRII	CCWGG	2 cut(s)	723, 1272
EcoT14I	CCWWGG	1 cut(s)	171
EgeI	GGCGCC	1 cut(s)	921
EheI	GGCGCC	1 cut(s)	921
ErhI	CCWWGG	1 cut(s)	171
FaeI	CATG	5 cut(s)	135, 175, 865, 1028, 1082
FaqI	GGGAC	1 cut(s)	1255
FatI	CATG	5 cut(s)	131, 171, 861, 1024, 1078
FauI	CCCGC	1 cut(s)	604
FbaI	TGATCA	2 cut(s)	201, 256
FspBI	CTAG	7 cut(s)	314, 431, 443, 539, 875, 891, 1303
GlaI	GCGC	4 cut(s)	510, 905, 921, 1168
GsuI	CTGGAG	1 cut(s)	62
HaeII	RGCGCY	2 cut(s)	923, 1170
HaeIII	GGCC	1 cut(s)	78
HapII	CCGG	1 cut(s)	1170
HhaI	GCGC	4 cut(s)	511, 906, 922, 1169
Hin1I	GRCGYC	1 cut(s)	920
Hin1II	CATG	5 cut(s)	135, 175, 865, 1028, 1082
Hin6I	GCGC	4 cut(s)	509, 904, 920, 1167
HinP1I	GCGC	4 cut(s)	509, 904, 920, 1167
HincII	GTYRAC	1 cut(s)	1179
HindII	GTYRAC	1 cut(s)	1179
HindIII	AAGCTT	2 cut(s)	152, 913
HpaII	CCGG	1 cut(s)	1170
HphI	GGTGA	3 cut(s)	160, 366, 752
Hpy166II	GTNNAC	2 cut(s)	381, 1179
Hpy188I	TCNGA	9 cut(s)	129, 180, 253, 525, 632, 673, 775, 803, 854
Hpy188III	TCNNGA	5 cut(s)	41, 323, 337, 449, 733
Hpy8I	GTNNAC	2 cut(s)	381, 1179
HpyAV	CCTTC	2 cut(s)	343, 1225
HpyCH4III	ACNGT	1 cut(s)	378
HpyCH4IV	ACGT	2 cut(s)	309, 881
HpyF3I	CTNAG	5 cut(s)	15, 207, 738, 1182, 1256
HpySE526I	ACGT	2 cut(s)	309, 881
Hsp92I	GRCGYC	1 cut(s)	920
Hsp92II	CATG	5 cut(s)	135, 175, 865, 1028, 1082
HspAI	GCGC	4 cut(s)	509, 904, 920, 1167
KasI	GGCGCC	1 cut(s)	919
Ksp22I	TGATCA	2 cut(s)	201, 256
Kzo9I	GATC	5 cut(s)	55, 160, 201, 256, 729
LmnI	GCTCC	1 cut(s)	43
LweI	GCATC	3 cut(s)	516, 677, 781
MaeI	CTAG	7 cut(s)	314, 431, 443, 539, 875, 891, 1303
MaeII	ACGT	2 cut(s)	309, 881
MaeIII	GTNAC	6 cut(s)	61, 139, 263, 877, 1108, 1185
MalI	GATC	5 cut(s)	57, 162, 203, 258, 731
MboI	GATC	5 cut(s)	55, 160, 201, 256, 729
MboII	GAAGA	7 cut(s)	182, 363, 488, 587, 749, 813, 842
MflI	RGATCY	2 cut(s)	55, 729
MluCI	AATT	7 cut(s)	33, 385, 584, 753, 939, 977, 1286
Mly113I	GGCGCC	1 cut(s)	920
MlyI	GAGTC	6 cut(s)	58, 326, 730, 851, 1174, 1271
MseI	TTAA	4 cut(s)	866, 984, 1035, 1289
MslI	CAYNNNNRTG	2 cut(s)	252, 765
MspA1I	CMGCKG	1 cut(s)	742
MspI	CCGG	1 cut(s)	1170
MspR9I	CCNGG	2 cut(s)	725, 1274
Mva1269I	GAATGC	4 cut(s)	99, 623, 1020, 1245
MvaI	CCWGG	2 cut(s)	725, 1274
MvnI	CGCG	1 cut(s)	906
NarI	GGCGCC	1 cut(s)	920
NcoI	CCATGG	1 cut(s)	171
NdeII	GATC	5 cut(s)	55, 160, 201, 256, 729
NlaIII	CATG	5 cut(s)	135, 175, 865, 1028, 1082
NlaIV	GGNNCC	4 cut(s)	177, 921, 1006, 1271
NmuCI	GTSAC	4 cut(s)	61, 139, 263, 877
NspI	RCATGY	2 cut(s)	135, 865
NspV	TTCGAA	1 cut(s)	597
OliI	CACNNNNGTG	1 cut(s)	765
PceI	AGGCCT	1 cut(s)	78
PciI	ACATGT	1 cut(s)	131
PctI	GAATGC	4 cut(s)	99, 623, 1020, 1245
PfeI	GAWTC	6 cut(s)	181, 244, 287, 633, 770, 1136
PleI	GAGTC	6 cut(s)	58, 325, 730, 850, 1174, 1271
PluTI	GGCGCC	1 cut(s)	923
PpsI	GAGTC	6 cut(s)	58, 325, 730, 850, 1174, 1271
Ppu21I	YACGTR	1 cut(s)	310
PscI	ACATGT	1 cut(s)	131
PshBI	ATTAAT	1 cut(s)	1289
Psp6I	CCWGG	2 cut(s)	723, 1272
PspGI	CCWGG	2 cut(s)	723, 1272
PspN4I	GGNNCC	4 cut(s)	177, 921, 1006, 1271
PspPI	GGNCC	3 cut(s)	346, 1059, 1269
PstI	CTGCAG	2 cut(s)	402, 790
PstNI	CAGNNNCTG	2 cut(s)	214, 794
PsuI	RGATCY	2 cut(s)	55, 729
PvuII	CAGCTG	1 cut(s)	742
RsaI	GTAC	5 cut(s)	312, 410, 462, 482, 884
RsaNI	GTAC	5 cut(s)	311, 409, 461, 481, 883
RseI	CAYNNNNRTG	2 cut(s)	252, 765
SaqAI	TTAA	4 cut(s)	866, 984, 1035, 1289
Sau3AI	GATC	5 cut(s)	55, 160, 201, 256, 729
Sau96I	GGNCC	3 cut(s)	346, 1059, 1269
ScaI	AGTACT	2 cut(s)	462, 482
SchI	GAGTC	6 cut(s)	58, 326, 730, 851, 1174, 1271
ScrFI	CCNGG	2 cut(s)	725, 1274
SfaNI	GCATC	3 cut(s)	516, 677, 781
SfcI	CTRYAG	2 cut(s)	398, 786
SfoI	GGCGCC	1 cut(s)	921
SfuI	TTCGAA	1 cut(s)	597
SinI	GGWCC	3 cut(s)	346, 1059, 1269
SmiMI	CAYNNNNRTG	2 cut(s)	252, 765
SpeI	ACTAGT	3 cut(s)	430, 442, 874
Sse9I	AATT	7 cut(s)	33, 385, 584, 753, 939, 977, 1286
SseBI	AGGCCT	1 cut(s)	78
SsiI	CCGC	4 cut(s)	611, 615, 646, 682
SspDI	GGCGCC	1 cut(s)	919
SspI	AATATT	1 cut(s)	565
SspMI	CTAG	7 cut(s)	314, 431, 443, 539, 875, 891, 1303
StuI	AGGCCT	1 cut(s)	78
StyD4I	CCNGG	2 cut(s)	723, 1272
StyI	CCWWGG	1 cut(s)	171
TaaI	ACNGT	1 cut(s)	378
TaiI	ACGT	2 cut(s)	312, 884
TaqI	TCGA	6 cut(s)	95, 242, 336, 357, 552, 597
TasI	AATT	7 cut(s)	33, 385, 584, 753, 939, 977, 1286
TatI	WGTACW	2 cut(s)	460, 480
TauI	GCSGC	3 cut(s)	618, 648, 684
TfiI	GAWTC	6 cut(s)	181, 244, 287, 633, 770, 1136
Tru1I	TTAA	4 cut(s)	866, 984, 1035, 1289
Tru9I	TTAA	4 cut(s)	866, 984, 1035, 1289
TscAI	CASTG	5 cut(s)	66, 215, 478, 1015, 1214
TseFI	GTSAC	4 cut(s)	61, 139, 263, 877
Tsp45I	GTSAC	4 cut(s)	61, 139, 263, 877
TspDTI	ATGAA	4 cut(s)	357, 616, 1013, 1095
TspRI	CASTG	5 cut(s)	66, 215, 478, 1015, 1214
VpaK11BI	GGWCC	3 cut(s)	346, 1059, 1269
VspI	ATTAAT	1 cut(s)	1289
XagI	CCTNNNNNAGG	1 cut(s)	88
XceI	RCATGY	2 cut(s)	135, 865
XspI	CTAG	7 cut(s)	314, 431, 443, 539, 875, 891, 1303
ZrmI	AGTACT	2 cut(s)	462, 482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.