FvH4_1g25241

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0017970
Physical Location & Seq
Reverse (-)
17044942 .. 17045664
723 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g25241.t1

Sequence Viewer

Length: 627 bp
ATGCGTAGAGGATATTACCTTAACACTATAAATTGGGATGTTCATTTCATGCTTTTATTCATATCAACTAAAAACAACTCAAAAGCGACTATGGACAACAAGAAGGAACTGATCACTTGCTACTTTTCTGATTCTGTATCCGAAAGGCGTGCATCGGAGTTGCAAGAAGCTTGGCCGGAGCTGCTGGCGGCTTTGGAAAAGTGTGGCGTTACTTCATTGAAGCTGAACCTGACCGAGTCTGACTTGACAGCTTCAATAACCAGAACTCATTGCCAAGATTACAGGGCTCACCGTCTTCTTGAACTATTGGCAACGACTAATGTGCCCCCATCTTTGGCAATAGAACTAGCACTCAACGACAAGGTGACATACGATCTCATCAAGATAGGGCAACAAGAAGGTGGATTTGCTTGGAAATATGGCATCAACCAGAAGCAATTCGCCGAACGCCGTGAGTGGCTGGAGAAGCACTACTTGGAAGCACTTGAATTTGCGACTGATTGTCATCTGTATCTTGGGGCACAAACTCTTACTGCTGTGGCTACTAAATCTGGTTGGCCTGTGAGCCTTGGGTTAAAAACTATCAGGACGCTTGTGGAACAACGCATACGCTATGGACCGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

209

Amino Acids

23.82

Weight (kDa)

6.96

Isoelectric Point (pI)

32.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017970)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25241
rosa_laevigata RLG00000006310
rosa_multiflora Rmu_sc0005887.1_g000013 Rmu_sc0022205.1_g000001
rosa_roxburghii Rroxscaffold_6G00400610
rosa_rugosa Rorug04G0315200
rosa_samantha Rh4BG377000 Rh4CG391100 Rh4DG371700
rosa_wichuraiana Rw0G007400 Rw0G016950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 188
AcoI YGGCCR 1 cut(s) 173
AcsI RAATTY 1 cut(s) 488
AfiI CCNNNNNNNGG 1 cut(s) 334
AgsI TTSAA 4 cut(s) 220, 255, 302, 488
AhdI GACNNNNNGTC 1 cut(s) 501
AjuI GAANNNNNNNTTGG 2 cut(s) 458, 490
AluBI AGCT 4 cut(s) 170, 181, 223, 251
AluI AGCT 4 cut(s) 170, 181, 223, 251
AoxI GGCC 2 cut(s) 173, 557
ApeKI GCWGC 1 cut(s) 181
ApoI RAATTY 1 cut(s) 488
Asp700I GAANNNNTTC 1 cut(s) 437
AspS9I GGNCC 1 cut(s) 617
AsuHPI GGTGA 2 cut(s) 281, 376
AvaII GGWCC 1 cut(s) 617
BaeGI GKGCMC 2 cut(s) 327, 523
BanII GRGCYC 1 cut(s) 289
BbsI GAAGAC 1 cut(s) 287
BbvI GCAGC 1 cut(s) 168
BccI CCATC 1 cut(s) 337
BceAI ACGGC 1 cut(s) 435
BcgI CGANNNNNNTGC 4 cut(s) 131, 165, 304, 338
BciVI GTATCC 1 cut(s) 148
BclI TGATCA 1 cut(s) 111
BfaI CTAG 1 cut(s) 347
BfuI GTATCC 1 cut(s) 148
BisI GCNGC 2 cut(s) 182, 189
BlsI GCNGC 2 cut(s) 183, 190
Bme18I GGWCC 1 cut(s) 617
BmeRI GACNNNNNGTC 1 cut(s) 501
BmgT120I GGNCC 1 cut(s) 617
BmsI GCATC 2 cut(s) 161, 432
BpiI GAAGAC 1 cut(s) 287
BpmI CTGGAG 1 cut(s) 482
BsaBI GATNNNNATC 1 cut(s) 504
BsaJI CCNNGG 1 cut(s) 568
BsaWI WCCGGW 1 cut(s) 619
Bsc4I CCNNNNNNNGG 1 cut(s) 334
Bse3DI GCAATG 1 cut(s) 268
Bse8I GATNNNNATC 1 cut(s) 504
BseDI CCNNGG 1 cut(s) 568
BseGI GGATG 1 cut(s) 43
BseJI GATNNNNATC 1 cut(s) 504
BseLI CCNNNNNNNGG 1 cut(s) 334
BseMI GCAATG 1 cut(s) 268
BseSI GKGCMC 2 cut(s) 327, 523
BseXI GCAGC 1 cut(s) 168
BshFI GGCC 2 cut(s) 175, 559
BsiSI CCGG 2 cut(s) 176, 620
BslI CCNNNNNNNGG 1 cut(s) 334
BsnI GGCC 2 cut(s) 175, 559
Bsp1286I GDGCHC 3 cut(s) 289, 327, 523
Bsp143I GATC 2 cut(s) 111, 373
BspACI CCGC 1 cut(s) 188
BspANI GGCC 2 cut(s) 175, 559
BsrDI GCAATG 1 cut(s) 268
BssECI CCNNGG 1 cut(s) 568
BssMI GATC 2 cut(s) 111, 373
BssT1I CCWWGG 1 cut(s) 568
Bst4CI ACNGT 1 cut(s) 293
BstC8I GCNNGC 2 cut(s) 150, 186
BstF5I GGATG 1 cut(s) 43
BstKTI GATC 2 cut(s) 114, 376
BstMBI GATC 2 cut(s) 111, 373
BstMWI GCNNNNNNNGC 2 cut(s) 181, 466
BstSLI GKGCMC 2 cut(s) 327, 523
BstV1I GCAGC 1 cut(s) 168
BstV2I GAAGAC 1 cut(s) 287
BsuI GTATCC 1 cut(s) 148
BsuRI GGCC 2 cut(s) 175, 559
BtsCI GGATG 1 cut(s) 43
Cac8I GCNNGC 2 cut(s) 150, 186
Cfr13I GGNCC 1 cut(s) 617
CseI GACGC 1 cut(s) 598
CviAII CATG 1 cut(s) 49
DpnI GATC 2 cut(s) 113, 375
DpnII GATC 2 cut(s) 111, 373
DriI GACNNNNNGTC 1 cut(s) 501
EaeI YGGCCR 1 cut(s) 173
Eam1105I GACNNNNNGTC 1 cut(s) 501
Eco130I CCWWGG 1 cut(s) 568
Eco24I GRGCYC 1 cut(s) 289
Eco47I GGWCC 1 cut(s) 617
EcoT14I CCWWGG 1 cut(s) 568
EcoT38I GRGCYC 1 cut(s) 289
ErhI CCWWGG 1 cut(s) 568
FaeI CATG 1 cut(s) 52
FaiI YATR 8 cut(s) 29, 50, 62, 92, 370, 420, 608, 615
FalI AAGNNNNNCTT 2 cut(s) 458, 490
FatI CATG 1 cut(s) 48
FbaI TGATCA 1 cut(s) 111
Fnu4HI GCNGC 2 cut(s) 182, 189
FokI GGATG 1 cut(s) 50
FriOI GRGCYC 1 cut(s) 289
Fsp4HI GCNGC 2 cut(s) 182, 189
FspBI CTAG 1 cut(s) 347
GluI GCNGC 2 cut(s) 182, 189
GsuI CTGGAG 1 cut(s) 482
HaeIII GGCC 2 cut(s) 175, 559
HapII CCGG 2 cut(s) 176, 620
HgaI GACGC 1 cut(s) 598
Hin1II CATG 1 cut(s) 52
HindIII AAGCTT 1 cut(s) 168
HinfI GANTC 2 cut(s) 131, 236
HpaII CCGG 2 cut(s) 176, 620
HphI GGTGA 2 cut(s) 281, 376
Hpy188I TCNGA 4 cut(s) 130, 142, 157, 241
Hpy188III TCNNGA 3 cut(s) 299, 382, 586
HpyAV CCTTC 2 cut(s) 97, 392
HpyCH4III ACNGT 1 cut(s) 293
HpyCH4V TGCA 2 cut(s) 152, 163
HpyF10VI GCNNNNNNNGC 2 cut(s) 181, 466
Hsp92II CATG 1 cut(s) 52
Ksp22I TGATCA 1 cut(s) 111
Kzo9I GATC 2 cut(s) 111, 373
LmnI GCTCC 1 cut(s) 178
Lsp1109I GCAGC 1 cut(s) 168
LweI GCATC 2 cut(s) 161, 432
MaeI CTAG 1 cut(s) 347
MaeIII GTNAC 2 cut(s) 208, 364
MalI GATC 2 cut(s) 113, 375
MboI GATC 2 cut(s) 111, 373
MboII GAAGA 1 cut(s) 287
MhlI GDGCHC 3 cut(s) 289, 327, 523
MluCI AATT 3 cut(s) 31, 437, 488
MlyI GAGTC 1 cut(s) 245
MroXI GAANNNNTTC 1 cut(s) 437
MseI TTAA 2 cut(s) 21, 575
MspI CCGG 2 cut(s) 176, 620
MwoI GCNNNNNNNGC 2 cut(s) 181, 466
NdeII GATC 2 cut(s) 111, 373
NlaIII CATG 1 cut(s) 52
NmuCI GTSAC 1 cut(s) 364
PdmI GAANNNNTTC 1 cut(s) 437
PfeI GAWTC 1 cut(s) 131
PflFI GACNNNGTC 1 cut(s) 235
PkrI GCNGC 2 cut(s) 183, 190
PleI GAGTC 1 cut(s) 244
PpsI GAGTC 1 cut(s) 244
PspPI GGNCC 1 cut(s) 617
PsrI GAACNNNNNNTAC 2 cut(s) 591, 623
PsyI GACNNNGTC 1 cut(s) 235
SaqAI TTAA 2 cut(s) 21, 575
SatI GCNGC 2 cut(s) 182, 189
Sau3AI GATC 2 cut(s) 111, 373
Sau96I GGNCC 1 cut(s) 617
SchI GAGTC 1 cut(s) 245
SduI GDGCHC 3 cut(s) 289, 327, 523
SetI ASST 8 cut(s) 21, 172, 183, 225, 231, 253, 366, 403
SfaNI GCATC 2 cut(s) 161, 432
SinI GGWCC 1 cut(s) 617
Sse9I AATT 3 cut(s) 31, 437, 488
SsiI CCGC 1 cut(s) 188
SspMI CTAG 1 cut(s) 347
StyI CCWWGG 1 cut(s) 568
TaaI ACNGT 1 cut(s) 293
TaqII GACCGA 1 cut(s) 248
TasI AATT 3 cut(s) 31, 437, 488
TauI GCSGC 1 cut(s) 191
TfiI GAWTC 1 cut(s) 131
Tru1I TTAA 2 cut(s) 21, 575
Tru9I TTAA 2 cut(s) 21, 575
TseFI GTSAC 1 cut(s) 364
TseI GCWGC 1 cut(s) 181
Tsp45I GTSAC 1 cut(s) 364
TspDTI ATGAA 4 cut(s) 32, 37, 49, 204
Tth111I GACNNNGTC 1 cut(s) 235
VpaK11BI GGWCC 1 cut(s) 617
XapI RAATTY 1 cut(s) 488
XmnI GAANNNNTTC 1 cut(s) 437
XspI CTAG 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.