Rh4DG371700

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0017970
Physical Location & Seq
Forward (+)
59010419 .. 59011261
843 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG371700.1

Sequence Viewer

Length: 579 bp
ATGGCTGCTGTAATCGAAGCAAACAACCCAAAAGCAACAATGGACAGCAAAGAAGAAGTGGGATTCACTTACTACTATTCCGCTTTCTTACCCGAAAGCCGAGCATCGGAGTTGCAAGTAGCTTGGCCGCAGCTGCTACCGGCTTTCAAGAAGTGCGGTGTTTCTTCATTGTCGCTGAATCTGACCGAGTCTGTCTTGAAAGCTTCAATAACAAGATTTCATTGCCAAGATTACAGGGCTTCTCATCTTCTTGAACTTTTGGCAACGACTACTGTGCCCCCATCTCTGGCGATAGAACTCGCTCTCAACCACGTGATCGCATACGATCTCATCAAGATAGGGTTACAAGAAGATGGATTTGCTTGGGAATATGGGATCGACAAGAAGCGATTTTCCGAGCGCCGTGAACATCTGAAGAAGCACTACTTGGAGGCACTTGAATTTGCTACCGACTGTCATCTTTATCTTGGAGCACACACTGTCACTGCTGTGGCTACTGATTCTAGCTGGCCTGCGTCACTTGGGTTAAACACGGTCAGGAAGTTGGTGGAACAGTGCATACGCTATGGACCGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

192

Amino Acids

21.51

Weight (kDa)

5.97

Isoelectric Point (pI)

43.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017970)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25241
rosa_laevigata RLG00000006310
rosa_multiflora Rmu_sc0005887.1_g000013 Rmu_sc0022205.1_g000001
rosa_roxburghii Rroxscaffold_6G00400610
rosa_rugosa Rorug04G0315200
rosa_samantha Rh4BG377000 Rh4CG391100 Rh4DG371700
rosa_wichuraiana Rw0G007400 Rw0G016950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 81, 128, 156
AclWI GGATC 1 cut(s) 383
AcoI YGGCCR 1 cut(s) 125
AcsI RAATTY 1 cut(s) 440
AcuI CTGAAG 1 cut(s) 434
AcvI CACGTG 1 cut(s) 313
AfiI CCNNNNNNNGG 2 cut(s) 106, 286
AgsI TTSAA 5 cut(s) 148, 199, 207, 254, 440
AjuI GAANNNNNNNTTGG 2 cut(s) 410, 442
AleI CACNNNNGTG 1 cut(s) 488
AluBI AGCT 4 cut(s) 122, 133, 203, 507
AluI AGCT 4 cut(s) 122, 133, 203, 507
Alw21I GWGCWC 1 cut(s) 475
AlwI GGATC 1 cut(s) 383
AoxI GGCC 2 cut(s) 125, 509
ApeKI GCWGC 3 cut(s) 5, 130, 133
ApoI RAATTY 1 cut(s) 440
AspLEI GCGC 1 cut(s) 402
AspS9I GGNCC 1 cut(s) 569
AvaII GGWCC 1 cut(s) 569
BaeGI GKGCMC 1 cut(s) 279
BarI GAAGNNNNNNTAC 2 cut(s) 407, 439
BbrPI CACGTG 1 cut(s) 313
Bbv12I GWGCWC 1 cut(s) 475
BbvI GCAGC 2 cut(s) 120, 142
BccI CCATC 2 cut(s) 289, 347
BceAI ACGGC 1 cut(s) 387
BcgI CGANNNNNNTGC 2 cut(s) 256, 290
BfaI CTAG 1 cut(s) 504
BfoI RGCGCY 1 cut(s) 403
BisI GCNGC 4 cut(s) 6, 128, 131, 134
BlsI GCNGC 4 cut(s) 7, 129, 132, 135
Bme18I GGWCC 1 cut(s) 569
BmgT120I GGNCC 1 cut(s) 569
BmsI GCATC 1 cut(s) 113
BsaAI YACGTR 1 cut(s) 313
BsaWI WCCGGW 1 cut(s) 571
Bsc4I CCNNNNNNNGG 2 cut(s) 106, 286
Bse118I RCCGGY 1 cut(s) 139
Bse3DI GCAATG 1 cut(s) 220
BseLI CCNNNNNNNGG 2 cut(s) 106, 286
BseMI GCAATG 1 cut(s) 220
BseSI GKGCMC 1 cut(s) 279
BseXI GCAGC 2 cut(s) 120, 142
BshFI GGCC 2 cut(s) 127, 511
BsiHKAI GWGCWC 1 cut(s) 475
BsiSI CCGG 2 cut(s) 140, 572
BslI CCNNNNNNNGG 2 cut(s) 106, 286
BsnI GGCC 2 cut(s) 127, 511
Bsp1286I GDGCHC 2 cut(s) 279, 475
Bsp143I GATC 3 cut(s) 315, 325, 375
BspACI CCGC 3 cut(s) 81, 128, 156
BspANI GGCC 2 cut(s) 127, 511
BspPI GGATC 1 cut(s) 383
BsrDI GCAATG 1 cut(s) 220
BsrFI RCCGGY 1 cut(s) 139
BssAI RCCGGY 1 cut(s) 139
BssMI GATC 3 cut(s) 315, 325, 375
Bst4CI ACNGT 5 cut(s) 274, 455, 481, 535, 555
BstBAI YACGTR 1 cut(s) 313
BstC8I GCNNGC 2 cut(s) 509, 513
BstH2I RGCGCY 1 cut(s) 403
BstHHI GCGC 1 cut(s) 402
BstKTI GATC 3 cut(s) 318, 328, 378
BstMBI GATC 3 cut(s) 315, 325, 375
BstMWI GCNNNNNNNGC 1 cut(s) 133
BstSLI GKGCMC 1 cut(s) 279
BstV1I GCAGC 2 cut(s) 120, 142
BsuRI GGCC 2 cut(s) 127, 511
BtsI GCAGTG 1 cut(s) 483
BtsIMutI CAGTG 3 cut(s) 477, 483, 560
Cac8I GCNNGC 2 cut(s) 509, 513
CfoI GCGC 1 cut(s) 402
Cfr10I RCCGGY 1 cut(s) 139
Cfr13I GGNCC 1 cut(s) 569
CseI GACGC 1 cut(s) 504
DpnI GATC 3 cut(s) 317, 327, 377
DpnII GATC 3 cut(s) 315, 325, 375
EaeI YGGCCR 1 cut(s) 125
Eco47I GGWCC 1 cut(s) 569
Eco57I CTGAAG 1 cut(s) 434
Eco72I CACGTG 1 cut(s) 313
FaiI YATR 4 cut(s) 322, 372, 560, 567
FalI AAGNNNNNCTT 2 cut(s) 410, 442
Fnu4HI GCNGC 4 cut(s) 6, 128, 131, 134
Fsp4HI GCNGC 4 cut(s) 6, 128, 131, 134
FspBI CTAG 1 cut(s) 504
GlaI GCGC 1 cut(s) 401
GluI GCNGC 4 cut(s) 6, 128, 131, 134
HaeII RGCGCY 1 cut(s) 403
HaeIII GGCC 2 cut(s) 127, 511
HapII CCGG 2 cut(s) 140, 572
HgaI GACGC 1 cut(s) 504
HhaI GCGC 1 cut(s) 402
Hin6I GCGC 1 cut(s) 400
HinP1I GCGC 1 cut(s) 400
HindIII AAGCTT 1 cut(s) 201
HinfI GANTC 4 cut(s) 63, 178, 188, 500
HpaII CCGG 2 cut(s) 140, 572
Hpy166II GTNNAC 1 cut(s) 407
Hpy188I TCNGA 4 cut(s) 109, 183, 397, 414
Hpy188III TCNNGA 5 cut(s) 148, 196, 251, 334, 538
Hpy8I GTNNAC 1 cut(s) 407
HpyCH4III ACNGT 5 cut(s) 274, 455, 481, 535, 555
HpyCH4IV ACGT 1 cut(s) 312
HpyCH4V TGCA 2 cut(s) 115, 558
HpyF10VI GCNNNNNNNGC 1 cut(s) 133
HpySE526I ACGT 1 cut(s) 312
HspAI GCGC 1 cut(s) 400
Kzo9I GATC 3 cut(s) 315, 325, 375
LmnI GCTCC 1 cut(s) 470
LpnPI CCDG 6 cut(s) 153, 220, 272, 493, 523, 525
Lsp1109I GCAGC 2 cut(s) 120, 142
LweI GCATC 1 cut(s) 113
MaeI CTAG 1 cut(s) 504
MaeII ACGT 1 cut(s) 312
MaeIII GTNAC 3 cut(s) 342, 481, 516
MalI GATC 3 cut(s) 317, 327, 377
MboI GATC 3 cut(s) 315, 325, 375
MboII GAAGA 5 cut(s) 65, 156, 239, 362, 427
MhlI GDGCHC 2 cut(s) 279, 475
MluCI AATT 1 cut(s) 440
MlyI GAGTC 1 cut(s) 197
MnlI CCTC 1 cut(s) 424
MseI TTAA 1 cut(s) 527
MslI CAYNNNNRTG 1 cut(s) 488
MspA1I CMGCKG 1 cut(s) 133
MspI CCGG 2 cut(s) 140, 572
MwoI GCNNNNNNNGC 1 cut(s) 133
NdeII GATC 3 cut(s) 315, 325, 375
NmeAIII GCCGAG 1 cut(s) 125
NmuCI GTSAC 2 cut(s) 481, 516
OliI CACNNNNGTG 1 cut(s) 488
PfeI GAWTC 3 cut(s) 63, 178, 500
PflFI GACNNNGTC 1 cut(s) 187
PkrI GCNGC 4 cut(s) 7, 129, 132, 135
PleI GAGTC 1 cut(s) 196
PmaCI CACGTG 1 cut(s) 313
PmlI CACGTG 1 cut(s) 313
PpsI GAGTC 1 cut(s) 196
Ppu21I YACGTR 1 cut(s) 313
PspCI CACGTG 1 cut(s) 313
PspPI GGNCC 1 cut(s) 569
PsrI GAACNNNNNNTAC 2 cut(s) 543, 575
PsyI GACNNNGTC 1 cut(s) 187
PvuII CAGCTG 1 cut(s) 133
RseI CAYNNNNRTG 1 cut(s) 488
SaqAI TTAA 1 cut(s) 527
SatI GCNGC 4 cut(s) 6, 128, 131, 134
Sau3AI GATC 3 cut(s) 315, 325, 375
Sau96I GGNCC 1 cut(s) 569
SchI GAGTC 1 cut(s) 197
SduI GDGCHC 2 cut(s) 279, 475
SetI ASST 5 cut(s) 124, 135, 205, 315, 509
SfaNI GCATC 1 cut(s) 113
SinI GGWCC 1 cut(s) 569
SmiMI CAYNNNNRTG 1 cut(s) 488
Sse9I AATT 1 cut(s) 440
SsiI CCGC 3 cut(s) 81, 128, 156
SspMI CTAG 1 cut(s) 504
TaaI ACNGT 5 cut(s) 274, 455, 481, 535, 555
TaiI ACGT 1 cut(s) 315
TaqI TCGA 2 cut(s) 15, 378
TaqII GACCGA 1 cut(s) 200
TasI AATT 1 cut(s) 440
TauI GCSGC 1 cut(s) 130
TfiI GAWTC 3 cut(s) 63, 178, 500
Tru1I TTAA 1 cut(s) 527
Tru9I TTAA 1 cut(s) 527
TscAI CASTG 3 cut(s) 484, 490, 560
TseFI GTSAC 2 cut(s) 481, 516
TseI GCWGC 3 cut(s) 5, 130, 133
Tsp45I GTSAC 2 cut(s) 481, 516
TspDTI ATGAA 2 cut(s) 156, 209
TspRI CASTG 3 cut(s) 484, 490, 560
Tth111I GACNNNGTC 1 cut(s) 187
VpaK11BI GGWCC 1 cut(s) 569
XapI RAATTY 1 cut(s) 440
XspI CTAG 1 cut(s) 504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.