Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022205.1

Orthogroup ID

OG0017970

Physical Location & Seq

Genomic Coordinates Forward (+)

1775 .. 2314

Gene Structure 540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022205.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

atggacatcaaagaggaagtgggattcacttactactattccgctttcttacccgaaagccgagcatcggagttgcaagtagcttggccggagctgctaccggctttcaagaagtgcggtgtttcttcattgtcgctgaatctgaccgagtctgtcttgagagcttcaataacaagatttcattgccaagattacagggcttctcatcttcttgaacttttggcaacgactactgtgcccccatctctggcgatagaactcgctctcaaccacgtgatcgcatacgatctcatcaagatagggttacaagaagatggatttgcttgggaatatgggatcgacaagaagcgattttccgaacgccgtgaatgtctgaagaagcactacttggaggcacttgaatttgctaccgactgtcatctttatcttggagcacacactgtcactgccgtggctactgattctggttggcctgcgtcacttgggttaaacacggtcaggaagtttgtggaacagtgcatacgctatggaccggtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

179

Amino Acids

20.21

Weight (kDa)

5.86

Isoelectric Point (pI)

48.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017970)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25241
rosa_laevigata	RLG00000006310
rosa_multiflora	Rmu_sc0005887.1_g000013 Rmu_sc0022205.1_g000001
rosa_roxburghii	Rroxscaffold_6G00400610
rosa_rugosa	Rorug04G0315200
rosa_samantha	Rh4BG377000 Rh4CG391100 Rh4DG371700
rosa_wichuraiana	Rw0G007400 Rw0G016950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	42, 117
AclWI	GGATC	1 cut(s)	344
AcoI	YGGCCR	1 cut(s)	86
AcsI	RAATTY	1 cut(s)	401
AcuI	CTGAAG	1 cut(s)	395
AcvI	CACGTG	1 cut(s)	274
AfiI	CCNNNNNNNGG	2 cut(s)	67, 247
AgeI	ACCGGT	1 cut(s)	532
AgsI	TTSAA	4 cut(s)	109, 168, 215, 401
AjuI	GAANNNNNNNTTGG	2 cut(s)	371, 403
AleI	CACNNNNGTG	1 cut(s)	449
AluBI	AGCT	3 cut(s)	83, 94, 164
AluI	AGCT	3 cut(s)	83, 94, 164
Alw21I	GWGCWC	1 cut(s)	436
AlwI	GGATC	1 cut(s)	344
AoxI	GGCC	2 cut(s)	86, 470
ApeKI	GCWGC	1 cut(s)	94
ApoI	RAATTY	1 cut(s)	401
AsiGI	ACCGGT	1 cut(s)	532
AspS9I	GGNCC	1 cut(s)	530
AvaII	GGWCC	1 cut(s)	530
BaeGI	GKGCMC	1 cut(s)	240
BarI	GAAGNNNNNNTAC	2 cut(s)	368, 400
BbrPI	CACGTG	1 cut(s)	274
Bbv12I	GWGCWC	1 cut(s)	436
BbvI	GCAGC	1 cut(s)	81
BccI	CCATC	2 cut(s)	250, 308
BceAI	ACGGC	2 cut(s)	348, 434
BcgI	CGANNNNNNTGC	2 cut(s)	217, 251
BisI	GCNGC	1 cut(s)	95
BlsI	GCNGC	1 cut(s)	96
Bme18I	GGWCC	1 cut(s)	530
BmgT120I	GGNCC	1 cut(s)	530
BmsI	GCATC	1 cut(s)	74
BpuEI	CTTGAG	1 cut(s)	178
BsaAI	YACGTR	1 cut(s)	274
BsaJI	CCNNGG	1 cut(s)	450
BsaWI	WCCGGW	1 cut(s)	532
Bsc4I	CCNNNNNNNGG	2 cut(s)	67, 247
Bse118I	RCCGGY	2 cut(s)	100, 532
Bse3DI	GCAATG	1 cut(s)	181
BseDI	CCNNGG	1 cut(s)	450
BseLI	CCNNNNNNNGG	2 cut(s)	67, 247
BseMI	GCAATG	1 cut(s)	181
BseSI	GKGCMC	1 cut(s)	240
BseXI	GCAGC	1 cut(s)	81
BshFI	GGCC	2 cut(s)	88, 472
BshTI	ACCGGT	1 cut(s)	532
BsiHKAI	GWGCWC	1 cut(s)	436
BsiSI	CCGG	3 cut(s)	89, 101, 533
BslI	CCNNNNNNNGG	2 cut(s)	67, 247
BsnI	GGCC	2 cut(s)	88, 472
Bsp1286I	GDGCHC	2 cut(s)	240, 436
Bsp143I	GATC	3 cut(s)	276, 286, 336
BspACI	CCGC	2 cut(s)	42, 117
BspANI	GGCC	2 cut(s)	88, 472
BspPI	GGATC	1 cut(s)	344
BsrDI	GCAATG	1 cut(s)	181
BsrFI	RCCGGY	2 cut(s)	100, 532
BssAI	RCCGGY	2 cut(s)	100, 532
BssECI	CCNNGG	1 cut(s)	450
BssMI	GATC	3 cut(s)	276, 286, 336
Bst4CI	ACNGT	5 cut(s)	235, 416, 442, 496, 516
BstBAI	YACGTR	1 cut(s)	274
BstC8I	GCNNGC	1 cut(s)	474
BstDSI	CCRYGG	1 cut(s)	450
BstKTI	GATC	3 cut(s)	279, 289, 339
BstMBI	GATC	3 cut(s)	276, 286, 336
BstMWI	GCNNNNNNNGC	1 cut(s)	94
BstSLI	GKGCMC	1 cut(s)	240
BstV1I	GCAGC	1 cut(s)	81
BsuRI	GGCC	2 cut(s)	88, 472
BtgI	CCRYGG	1 cut(s)	450
BtsI	GCAGTG	1 cut(s)	444
BtsIMutI	CAGTG	3 cut(s)	438, 444, 521
Cac8I	GCNNGC	1 cut(s)	474
Cfr10I	RCCGGY	2 cut(s)	100, 532
Cfr13I	GGNCC	1 cut(s)	530
CseI	GACGC	1 cut(s)	465
CspAI	ACCGGT	1 cut(s)	532
CviJI	RGCY	9 cut(s)	60, 83, 88, 94, 104, 164, 200, 455, 472
CviKI_1	RGCY	9 cut(s)	60, 83, 88, 94, 104, 164, 200, 455, 472
DpnI	GATC	3 cut(s)	278, 288, 338
DpnII	GATC	3 cut(s)	276, 286, 336
EaeI	YGGCCR	1 cut(s)	86
Eco47I	GGWCC	1 cut(s)	530
Eco57I	CTGAAG	1 cut(s)	395
Eco72I	CACGTG	1 cut(s)	274
FaiI	YATR	4 cut(s)	283, 333, 521, 528
FalI	AAGNNNNNCTT	2 cut(s)	371, 403
Fnu4HI	GCNGC	1 cut(s)	95
Fsp4HI	GCNGC	1 cut(s)	95
GluI	GCNGC	1 cut(s)	95
HaeIII	GGCC	2 cut(s)	88, 472
HapII	CCGG	3 cut(s)	89, 101, 533
HgaI	GACGC	1 cut(s)	465
HinfI	GANTC	4 cut(s)	24, 139, 149, 461
HpaII	CCGG	3 cut(s)	89, 101, 533
Hpy188I	TCNGA	4 cut(s)	70, 144, 358, 375
Hpy188III	TCNNGA	5 cut(s)	109, 157, 212, 295, 499
HpyCH4III	ACNGT	5 cut(s)	235, 416, 442, 496, 516
HpyCH4IV	ACGT	1 cut(s)	273
HpyCH4V	TGCA	2 cut(s)	76, 519
HpyF10VI	GCNNNNNNNGC	1 cut(s)	94
HpySE526I	ACGT	1 cut(s)	273
Kzo9I	GATC	3 cut(s)	276, 286, 336
LmnI	GCTCC	2 cut(s)	91, 431
LpnPI	CCDG	7 cut(s)	102, 114, 181, 233, 450, 484, 486
Lsp1109I	GCAGC	1 cut(s)	81
LweI	GCATC	1 cut(s)	74
MaeII	ACGT	1 cut(s)	273
MaeIII	GTNAC	3 cut(s)	303, 442, 477
MalI	GATC	3 cut(s)	278, 288, 338
MboI	GATC	3 cut(s)	276, 286, 336
MboII	GAAGA	4 cut(s)	117, 200, 323, 388
MhlI	GDGCHC	2 cut(s)	240, 436
MluCI	AATT	1 cut(s)	401
MlyI	GAGTC	1 cut(s)	158
MnlI	CCTC	2 cut(s)	7, 385
MseI	TTAA	1 cut(s)	488
MslI	CAYNNNNRTG	1 cut(s)	449
MspI	CCGG	3 cut(s)	89, 101, 533
MwoI	GCNNNNNNNGC	1 cut(s)	94
NdeII	GATC	3 cut(s)	276, 286, 336
NmeAIII	GCCGAG	1 cut(s)	86
NmuCI	GTSAC	2 cut(s)	442, 477
OliI	CACNNNNGTG	1 cut(s)	449
PfeI	GAWTC	3 cut(s)	24, 139, 461
PflFI	GACNNNGTC	1 cut(s)	148
PinAI	ACCGGT	1 cut(s)	532
PkrI	GCNGC	1 cut(s)	96
PleI	GAGTC	1 cut(s)	157
PmaCI	CACGTG	1 cut(s)	274
PmlI	CACGTG	1 cut(s)	274
PpsI	GAGTC	1 cut(s)	157
Ppu21I	YACGTR	1 cut(s)	274
PspCI	CACGTG	1 cut(s)	274
PspPI	GGNCC	1 cut(s)	530
PsrI	GAACNNNNNNTAC	2 cut(s)	504, 536
PsyI	GACNNNGTC	1 cut(s)	148
RseI	CAYNNNNRTG	1 cut(s)	449
SaqAI	TTAA	1 cut(s)	488
SatI	GCNGC	1 cut(s)	95
Sau3AI	GATC	3 cut(s)	276, 286, 336
Sau96I	GGNCC	1 cut(s)	530
SchI	GAGTC	1 cut(s)	158
SduI	GDGCHC	2 cut(s)	240, 436
SetI	ASST	4 cut(s)	85, 96, 166, 276
SfaNI	GCATC	1 cut(s)	74
SinI	GGWCC	1 cut(s)	530
SmiMI	CAYNNNNRTG	1 cut(s)	449
SmlI	CTYRAG	1 cut(s)	157
SmoI	CTYRAG	1 cut(s)	157
Sse9I	AATT	1 cut(s)	401
SsiI	CCGC	2 cut(s)	42, 117
TaaI	ACNGT	5 cut(s)	235, 416, 442, 496, 516
TaiI	ACGT	1 cut(s)	276
TaqI	TCGA	1 cut(s)	339
TaqII	GACCGA	1 cut(s)	161
TasI	AATT	1 cut(s)	401
TfiI	GAWTC	3 cut(s)	24, 139, 461
Tru1I	TTAA	1 cut(s)	488
Tru9I	TTAA	1 cut(s)	488
TscAI	CASTG	3 cut(s)	445, 451, 521
TseFI	GTSAC	2 cut(s)	442, 477
TseI	GCWGC	1 cut(s)	94
Tsp45I	GTSAC	2 cut(s)	442, 477
TspDTI	ATGAA	2 cut(s)	117, 170
TspRI	CASTG	3 cut(s)	445, 451, 521
Tth111I	GACNNNGTC	1 cut(s)	148
VpaK11BI	GGWCC	1 cut(s)	530
XapI	RAATTY	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.