Rroxscaffold_6G00400610

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0017970
Physical Location & Seq
Forward (+)
22689611 .. 22690076
466 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00400610.1

Sequence Viewer

Length: 390 bp
ATGGACAGCCGAAAGCCGCGTATCGGAGCTCCAATTCGAAGCTCTCCCATATTCACTTACTACTATTTCGCTTTCTTACCCGAAAGCCGCGCATCGGAGCTGCAAGTAGCATGGCCGGAGCTGCTACGGCTTTCAAGAAATTATAGGGCTTCTCATCTTCTTGAAAGTTTAGCAATGACTACTATCCCCCCATCTCCGGCGATAGAACTAGCTCTCAAGGATGTGATCGCCTACAATCTCATCAAGATAGGGTTACAAGAAGATGGATTTGCTTGGGAATATGGGATCGACAAGAAGAGAGTTTTGAGGAGAGAGAAAGTGGATCCGAGATTTTCTCTCTCCTCCATGACTAGTGTCTCACGCCACCATGCAGCTCACCTCTACCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

14.87

Weight (kDa)

9.64

Isoelectric Point (pI)

60.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017970)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25241
rosa_laevigata RLG00000006310
rosa_multiflora Rmu_sc0005887.1_g000013 Rmu_sc0022205.1_g000001
rosa_roxburghii Rroxscaffold_6G00400610
rosa_rugosa Rorug04G0315200
rosa_samantha Rh4BG377000 Rh4CG391100 Rh4DG371700
rosa_wichuraiana Rw0G007400 Rw0G016950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 19, 90
AciI CCGC 2 cut(s) 17, 88
AclWI GGATC 3 cut(s) 293, 317, 330
AcoI YGGCCR 1 cut(s) 113
AfiI CCNNNNNNNGG 3 cut(s) 23, 94, 196
AgsI TTSAA 2 cut(s) 135, 164
AhlI ACTAGT 1 cut(s) 350
AluBI AGCT 6 cut(s) 29, 42, 100, 121, 212, 374
AluI AGCT 6 cut(s) 29, 42, 100, 121, 212, 374
Alw21I GWGCWC 1 cut(s) 31
Alw26I GTCTC 1 cut(s) 361
AlwI GGATC 3 cut(s) 293, 317, 330
AoxI GGCC 1 cut(s) 113
ApeKI GCWGC 3 cut(s) 100, 121, 371
AspLEI GCGC 1 cut(s) 92
AsuHPI GGTGA 1 cut(s) 368
AsuII TTCGAA 1 cut(s) 37
BamHI GGATCC 1 cut(s) 322
BanII GRGCYC 1 cut(s) 31
Bbv12I GWGCWC 1 cut(s) 31
BbvI GCAGC 3 cut(s) 87, 108, 383
BccI CCATC 2 cut(s) 199, 257
BceAI ACGGC 1 cut(s) 143
BcoDI GTCTC 1 cut(s) 361
BcuI ACTAGT 1 cut(s) 350
BfaI CTAG 2 cut(s) 209, 351
BisI GCNGC 5 cut(s) 17, 88, 101, 122, 372
BlsI GCNGC 5 cut(s) 18, 89, 102, 123, 373
BmiI GGNNCC 1 cut(s) 324
BmsI GCATC 1 cut(s) 101
BoxI GACNNNNGTC 1 cut(s) 353
BplI GAGNNNNNCTC 2 cut(s) 319, 351
Bpu14I TTCGAA 1 cut(s) 37
BpuEI CTTGAG 1 cut(s) 200
Bsc4I CCNNNNNNNGG 3 cut(s) 23, 94, 196
Bse3DI GCAATG 1 cut(s) 180
BseGI GGATG 1 cut(s) 226
BseLI CCNNNNNNNGG 3 cut(s) 23, 94, 196
BseMI GCAATG 1 cut(s) 180
BseRI GAGGAG 2 cut(s) 322, 331
BseXI GCAGC 3 cut(s) 87, 108, 383
Bsh1236I CGCG 2 cut(s) 19, 90
BshFI GGCC 1 cut(s) 115
BsiHKAI GWGCWC 1 cut(s) 31
BsiSI CCGG 2 cut(s) 116, 197
BslI CCNNNNNNNGG 3 cut(s) 23, 94, 196
BsmAI GTCTC 1 cut(s) 361
BsnI GGCC 1 cut(s) 115
Bsp119I TTCGAA 1 cut(s) 37
Bsp1286I GDGCHC 1 cut(s) 31
Bsp143I GATC 3 cut(s) 225, 285, 322
BspACI CCGC 2 cut(s) 17, 88
BspANI GGCC 1 cut(s) 115
BspFNI CGCG 2 cut(s) 19, 90
BspLI GGNNCC 1 cut(s) 324
BspPI GGATC 3 cut(s) 293, 317, 330
BspT104I TTCGAA 1 cut(s) 37
BsrDI GCAATG 1 cut(s) 180
BssMI GATC 3 cut(s) 225, 285, 322
Bst6I CTCTTC 1 cut(s) 290
BstBI TTCGAA 1 cut(s) 37
BstF5I GGATG 1 cut(s) 226
BstFNI CGCG 2 cut(s) 19, 90
BstHHI GCGC 1 cut(s) 92
BstKTI GATC 3 cut(s) 228, 288, 325
BstMAI GTCTC 1 cut(s) 361
BstMBI GATC 3 cut(s) 225, 285, 322
BstMWI GCNNNNNNNGC 2 cut(s) 121, 127
BstPAI GACNNNNGTC 1 cut(s) 353
BstUI CGCG 2 cut(s) 19, 90
BstV1I GCAGC 3 cut(s) 87, 108, 383
BstX2I RGATCY 1 cut(s) 322
BstYI RGATCY 1 cut(s) 322
BsuRI GGCC 1 cut(s) 115
BtsCI GGATG 1 cut(s) 226
CfoI GCGC 1 cut(s) 92
CviAII CATG 3 cut(s) 111, 346, 368
DpnI GATC 3 cut(s) 227, 287, 324
DpnII GATC 3 cut(s) 225, 285, 322
EaeI YGGCCR 1 cut(s) 113
Eam1104I CTCTTC 1 cut(s) 290
EarI CTCTTC 1 cut(s) 290
Ecl136II GAGCTC 1 cut(s) 29
Eco24I GRGCYC 1 cut(s) 31
Eco53kI GAGCTC 1 cut(s) 29
EcoICRI GAGCTC 1 cut(s) 29
EcoT38I GRGCYC 1 cut(s) 31
FaeI CATG 3 cut(s) 114, 349, 371
FaiI YATR 6 cut(s) 50, 112, 144, 282, 347, 369
FatI CATG 3 cut(s) 110, 345, 367
Fnu4HI GCNGC 5 cut(s) 17, 88, 101, 122, 372
FokI GGATG 1 cut(s) 233
FriOI GRGCYC 1 cut(s) 31
Fsp4HI GCNGC 5 cut(s) 17, 88, 101, 122, 372
FspBI CTAG 2 cut(s) 209, 351
GlaI GCGC 1 cut(s) 91
GluI GCNGC 5 cut(s) 17, 88, 101, 122, 372
HaeIII GGCC 1 cut(s) 115
HapII CCGG 2 cut(s) 116, 197
HhaI GCGC 1 cut(s) 92
Hin1II CATG 3 cut(s) 114, 349, 371
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HpaII CCGG 2 cut(s) 116, 197
HphI GGTGA 1 cut(s) 368
Hpy188I TCNGA 3 cut(s) 26, 97, 327
Hpy188III TCNNGA 3 cut(s) 135, 161, 244
HpyCH4V TGCA 2 cut(s) 103, 371
HpyF10VI GCNNNNNNNGC 2 cut(s) 121, 127
Hsp92II CATG 3 cut(s) 114, 349, 371
HspAI GCGC 1 cut(s) 90
Kzo9I GATC 3 cut(s) 225, 285, 322
LmnI GCTCC 4 cut(s) 26, 34, 97, 118
LpnPI CCDG 2 cut(s) 129, 210
Lsp1109I GCAGC 3 cut(s) 87, 108, 383
LweI GCATC 1 cut(s) 101
MaeI CTAG 2 cut(s) 209, 351
MaeIII GTNAC 1 cut(s) 252
MalI GATC 3 cut(s) 227, 287, 324
MboI GATC 3 cut(s) 225, 285, 322
MboII GAAGA 3 cut(s) 149, 272, 307
MflI RGATCY 1 cut(s) 322
MhlI GDGCHC 1 cut(s) 31
MluCI AATT 2 cut(s) 33, 139
MnlI CCTC 3 cut(s) 300, 352, 389
MspI CCGG 2 cut(s) 116, 197
MvnI CGCG 2 cut(s) 19, 90
MwoI GCNNNNNNNGC 2 cut(s) 121, 127
NdeII GATC 3 cut(s) 225, 285, 322
NlaIII CATG 3 cut(s) 114, 349, 371
NlaIV GGNNCC 1 cut(s) 324
NspV TTCGAA 1 cut(s) 37
PkrI GCNGC 5 cut(s) 18, 89, 102, 123, 373
PshAI GACNNNNGTC 1 cut(s) 353
Psp124BI GAGCTC 1 cut(s) 31
PspN4I GGNNCC 1 cut(s) 324
PsuI RGATCY 1 cut(s) 322
SacI GAGCTC 1 cut(s) 31
SatI GCNGC 5 cut(s) 17, 88, 101, 122, 372
Sau3AI GATC 3 cut(s) 225, 285, 322
SduI GDGCHC 1 cut(s) 31
SetI ASST 7 cut(s) 31, 44, 102, 123, 214, 376, 381
SfaNI GCATC 1 cut(s) 101
SfuI TTCGAA 1 cut(s) 37
SmlI CTYRAG 1 cut(s) 215
SmoI CTYRAG 1 cut(s) 215
SpeI ACTAGT 1 cut(s) 350
Sse9I AATT 2 cut(s) 33, 139
SsiI CCGC 2 cut(s) 17, 88
SspMI CTAG 2 cut(s) 209, 351
SstI GAGCTC 1 cut(s) 31
TaqI TCGA 2 cut(s) 37, 288
TasI AATT 2 cut(s) 33, 139
TauI GCSGC 2 cut(s) 19, 90
TseI GCWGC 3 cut(s) 100, 121, 371
XspI CTAG 2 cut(s) 209, 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.