Rw0G016950

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00751
OG0017970
Physical Location & Seq
Forward (+)
625012 .. 625551
540 bp
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UTR
Exon/CDS
Intron
Rw0G016950.1

Sequence Viewer

Length: 540 bp
ATGGACATCAAAGAGGAAGTGGGATTCACTTACTACTATTCCGCTTTCTTACCCGAAAGCCGAGCATCGGAGTTGCAAGTAGCTTGGCCGGAGCTGCTACCGGCTTTCAAGAAGTGCGGTGTTTCTTCATTGTCGCTGAATCTGACCGAGTCTTTCTTGAGAGCTTCAATAACAAGATTTCATTGCCAAGATTACAGGGCTTCTCATCTTCTTGAACTTTTGGCAACGACTACTGTGCCCCCATCTCTGGCGATAGAACTCGCTCTCAACCACGTGATCGCATACGATCTCATCAAGATAGGGTTACAAGAAGATGGATTTGCTTGGGAATATGGGATCGACAAGAAGCGATTTTCCGAACGCCGTGAATGTCTGAAGAAGCACTACTTGGAGGCACTTGAATTTGCTACCGACTGTCATCTTTATCTTGGAGCACACACTGTCACTGCTGTGGCTACTGATTCTGGTTGGCCTGCGTCACTTGGGTTAAACACGGTCAGGAAGTTTGTGGAACAGTGCATACGCTATGGACCGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

179

Amino Acids

20.27

Weight (kDa)

5.69

Isoelectric Point (pI)

47.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017970)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25241
rosa_laevigata RLG00000006310
rosa_multiflora Rmu_sc0005887.1_g000013 Rmu_sc0022205.1_g000001
rosa_roxburghii Rroxscaffold_6G00400610
rosa_rugosa Rorug04G0315200
rosa_samantha Rh4BG377000 Rh4CG391100 Rh4DG371700
rosa_wichuraiana Rw0G007400 Rw0G016950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 42, 117
AclWI GGATC 1 cut(s) 344
AcoI YGGCCR 1 cut(s) 86
AcsI RAATTY 1 cut(s) 401
AcuI CTGAAG 1 cut(s) 395
AcvI CACGTG 1 cut(s) 274
AfiI CCNNNNNNNGG 2 cut(s) 67, 247
AgsI TTSAA 4 cut(s) 109, 168, 215, 401
AjuI GAANNNNNNNTTGG 2 cut(s) 371, 403
AleI CACNNNNGTG 1 cut(s) 449
AluBI AGCT 3 cut(s) 83, 94, 164
AluI AGCT 3 cut(s) 83, 94, 164
Alw21I GWGCWC 1 cut(s) 436
AlwI GGATC 1 cut(s) 344
AoxI GGCC 2 cut(s) 86, 470
ApeKI GCWGC 1 cut(s) 94
ApoI RAATTY 1 cut(s) 401
AspS9I GGNCC 1 cut(s) 530
AvaII GGWCC 1 cut(s) 530
BaeGI GKGCMC 1 cut(s) 240
BarI GAAGNNNNNNTAC 2 cut(s) 368, 400
BbrPI CACGTG 1 cut(s) 274
Bbv12I GWGCWC 1 cut(s) 436
BbvI GCAGC 1 cut(s) 81
BccI CCATC 2 cut(s) 250, 308
BceAI ACGGC 1 cut(s) 348
BcgI CGANNNNNNTGC 2 cut(s) 217, 251
BisI GCNGC 1 cut(s) 95
BlsI GCNGC 1 cut(s) 96
Bme18I GGWCC 1 cut(s) 530
BmgT120I GGNCC 1 cut(s) 530
BmsI GCATC 1 cut(s) 74
BpuEI CTTGAG 1 cut(s) 178
BsaAI YACGTR 1 cut(s) 274
BsaWI WCCGGW 1 cut(s) 532
Bsc4I CCNNNNNNNGG 2 cut(s) 67, 247
Bse118I RCCGGY 1 cut(s) 100
Bse3DI GCAATG 1 cut(s) 181
BseLI CCNNNNNNNGG 2 cut(s) 67, 247
BseMI GCAATG 1 cut(s) 181
BseSI GKGCMC 1 cut(s) 240
BseXI GCAGC 1 cut(s) 81
BshFI GGCC 2 cut(s) 88, 472
BsiHKAI GWGCWC 1 cut(s) 436
BsiSI CCGG 3 cut(s) 89, 101, 533
BslI CCNNNNNNNGG 2 cut(s) 67, 247
BsnI GGCC 2 cut(s) 88, 472
Bsp1286I GDGCHC 2 cut(s) 240, 436
Bsp143I GATC 3 cut(s) 276, 286, 336
BspACI CCGC 2 cut(s) 42, 117
BspANI GGCC 2 cut(s) 88, 472
BspPI GGATC 1 cut(s) 344
BsrDI GCAATG 1 cut(s) 181
BsrFI RCCGGY 1 cut(s) 100
BssAI RCCGGY 1 cut(s) 100
BssMI GATC 3 cut(s) 276, 286, 336
Bst4CI ACNGT 5 cut(s) 235, 416, 442, 496, 516
BstBAI YACGTR 1 cut(s) 274
BstC8I GCNNGC 1 cut(s) 474
BstKTI GATC 3 cut(s) 279, 289, 339
BstMBI GATC 3 cut(s) 276, 286, 336
BstMWI GCNNNNNNNGC 1 cut(s) 94
BstSLI GKGCMC 1 cut(s) 240
BstV1I GCAGC 1 cut(s) 81
BsuRI GGCC 2 cut(s) 88, 472
BtsI GCAGTG 1 cut(s) 444
BtsIMutI CAGTG 3 cut(s) 438, 444, 521
Cac8I GCNNGC 1 cut(s) 474
Cfr10I RCCGGY 1 cut(s) 100
Cfr13I GGNCC 1 cut(s) 530
CseI GACGC 1 cut(s) 465
CviJI RGCY 9 cut(s) 60, 83, 88, 94, 104, 164, 200, 455, 472
CviKI_1 RGCY 9 cut(s) 60, 83, 88, 94, 104, 164, 200, 455, 472
DpnI GATC 3 cut(s) 278, 288, 338
DpnII GATC 3 cut(s) 276, 286, 336
EaeI YGGCCR 1 cut(s) 86
Eco47I GGWCC 1 cut(s) 530
Eco57I CTGAAG 1 cut(s) 395
Eco72I CACGTG 1 cut(s) 274
FaiI YATR 4 cut(s) 283, 333, 521, 528
FalI AAGNNNNNCTT 2 cut(s) 371, 403
Fnu4HI GCNGC 1 cut(s) 95
Fsp4HI GCNGC 1 cut(s) 95
GluI GCNGC 1 cut(s) 95
HaeIII GGCC 2 cut(s) 88, 472
HapII CCGG 3 cut(s) 89, 101, 533
HgaI GACGC 1 cut(s) 465
HinfI GANTC 4 cut(s) 24, 139, 149, 461
HpaII CCGG 3 cut(s) 89, 101, 533
Hpy188I TCNGA 4 cut(s) 70, 144, 358, 375
Hpy188III TCNNGA 5 cut(s) 109, 157, 212, 295, 499
HpyCH4III ACNGT 5 cut(s) 235, 416, 442, 496, 516
HpyCH4IV ACGT 1 cut(s) 273
HpyCH4V TGCA 2 cut(s) 76, 519
HpyF10VI GCNNNNNNNGC 1 cut(s) 94
HpySE526I ACGT 1 cut(s) 273
Kzo9I GATC 3 cut(s) 276, 286, 336
LmnI GCTCC 2 cut(s) 91, 431
LpnPI CCDG 7 cut(s) 102, 114, 181, 233, 450, 484, 486
Lsp1109I GCAGC 1 cut(s) 81
LweI GCATC 1 cut(s) 74
MaeII ACGT 1 cut(s) 273
MaeIII GTNAC 3 cut(s) 303, 442, 477
MalI GATC 3 cut(s) 278, 288, 338
MboI GATC 3 cut(s) 276, 286, 336
MboII GAAGA 4 cut(s) 117, 200, 323, 388
MhlI GDGCHC 2 cut(s) 240, 436
MluCI AATT 1 cut(s) 401
MlyI GAGTC 1 cut(s) 158
MnlI CCTC 2 cut(s) 7, 385
MseI TTAA 1 cut(s) 488
MslI CAYNNNNRTG 1 cut(s) 449
MspI CCGG 3 cut(s) 89, 101, 533
MwoI GCNNNNNNNGC 1 cut(s) 94
NdeII GATC 3 cut(s) 276, 286, 336
NmeAIII GCCGAG 1 cut(s) 86
NmuCI GTSAC 2 cut(s) 442, 477
OliI CACNNNNGTG 1 cut(s) 449
PfeI GAWTC 3 cut(s) 24, 139, 461
PflFI GACNNNGTC 1 cut(s) 148
PkrI GCNGC 1 cut(s) 96
PleI GAGTC 1 cut(s) 157
PmaCI CACGTG 1 cut(s) 274
PmlI CACGTG 1 cut(s) 274
PpsI GAGTC 1 cut(s) 157
Ppu21I YACGTR 1 cut(s) 274
PspCI CACGTG 1 cut(s) 274
PspPI GGNCC 1 cut(s) 530
PsrI GAACNNNNNNTAC 2 cut(s) 504, 536
PsyI GACNNNGTC 1 cut(s) 148
RseI CAYNNNNRTG 1 cut(s) 449
SaqAI TTAA 1 cut(s) 488
SatI GCNGC 1 cut(s) 95
Sau3AI GATC 3 cut(s) 276, 286, 336
Sau96I GGNCC 1 cut(s) 530
SchI GAGTC 1 cut(s) 158
SduI GDGCHC 2 cut(s) 240, 436
SetI ASST 4 cut(s) 85, 96, 166, 276
SfaNI GCATC 1 cut(s) 74
SinI GGWCC 1 cut(s) 530
SmiMI CAYNNNNRTG 1 cut(s) 449
SmlI CTYRAG 1 cut(s) 157
SmoI CTYRAG 1 cut(s) 157
Sse9I AATT 1 cut(s) 401
SsiI CCGC 2 cut(s) 42, 117
TaaI ACNGT 5 cut(s) 235, 416, 442, 496, 516
TaiI ACGT 1 cut(s) 276
TaqI TCGA 1 cut(s) 339
TaqII GACCGA 1 cut(s) 161
TasI AATT 1 cut(s) 401
TfiI GAWTC 3 cut(s) 24, 139, 461
Tru1I TTAA 1 cut(s) 488
Tru9I TTAA 1 cut(s) 488
TscAI CASTG 3 cut(s) 445, 451, 521
TseFI GTSAC 2 cut(s) 442, 477
TseI GCWGC 1 cut(s) 94
Tsp45I GTSAC 2 cut(s) 442, 477
TspDTI ATGAA 2 cut(s) 117, 170
TspRI CASTG 3 cut(s) 445, 451, 521
Tth111I GACNNNGTC 1 cut(s) 148
VpaK11BI GGWCC 1 cut(s) 530
XapI RAATTY 1 cut(s) 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.