FvH4_1g26300

Transferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0017176
Physical Location & Seq
Reverse (-)
18123506 .. 18125570
2065 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g26300.t1

Sequence Viewer

Length: 1329 bp
ATGCACCGCATGGCTTTCTCTGTGATCCGGTCAAGCCAAAGCCTAGTTAGACCATGCGAGCAGACGCCGATCGCCACCCTTGATTTATCGGAAATCGACAGCTTGCCGGTACTAAGAAGCAATGCTCAAACACTGCATGTGTATAGACATGGAGAGTATCATCAAGTAGCCAAAGTTATAAAAGAAGGTCTGTCGAAAGCATTGGTTCCATATTATCCTCTTGCAGGGCGGTTGAAAGAGTCTAATGGAAATGGTGGAGGTCAGCTTCAAGTCGAATGTAGTGGACAAGGTGTGTGGTTTGTCGAGGCATATGCTAATTGTAGACTTGATGCTGTCAATTACTTTGATGATACTGTTGCCTCCCACTCCAGCAAACATGGTGATCTTCTTCCTAGTCAATTTCCAGGTGCTGATGGACTGGACCTACTTCTACAAATGCAGGTGACTGAATTTGAATGTGGTGGATTCGTGATTGGCATCAAGTTCAGCCACAGCATCTGTGACGGCTTAGGATCTGCACAATTTCTCAATGCTGTTAGCGAGATGGCAAGGGGCCTCAAGCACCCGAGTATTACACCAGTAGTGTGGAAAAGAGACTTCTTCACGAATTCTCTACCCCGACAACAGCTAAACCTAAACACCACCACCAACAGTTCTTCAGTACCTAACTACCAACTAGGGCACGCTAACATTGACATTTACATGGACCAAATCAATCACTTGAAGCGAGAAATTCAGGAATCTGCTGGATGGAGTTGCTCTTCTTTCGAAGTAGTAGCTGCCGCTTTGTGGATTTGTCGAACTACGGCTGTGATAGTGTCGGACAACTTGAAGCAAAATGCACAAGTCAAGCTGGTCTTCTTTGCTAATTGCCGTCATCTTTTGGACCCTCCATTGCCAAAAGGCTTCTACGGCAACTGCTTCTTCCCCGTCACGGCAACAGCTTCGTCCGAAACACTGGCTCATTCGTCGCTAGCTGATGTAGTGGAAATGATCCAAGAAGCCAAGGCTAAGCTTCCGAACGAGTTTACCAATTACATCAAACTGATCAAAGAGGGTCATCAGATTGAGGACGACCCGTTTACCCCAGCTCTAAGTTATGAAACGTTGCTTATATCCGAATGGGGCAAACTGGGATTCAACCAGGTCGATTTCGGTTGGGGGTCACCAGAACATGTCATCCCAATACAAGCCTCTGCAATCATGCCAGCGGCCATTGTTGGGACTTTGCCTTTGCCACAGAATGGTATCCGTCTAGTCACCTGGTGCGTGGAAGAGATCCATCGTCAAAACTTTATTCATCACATGATGAAAATGATGGGGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0016410 GO:0016740 GO:0016746 GO:0016747
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

443

Amino Acids

48.97

Weight (kDa)

6.09

Isoelectric Point (pI)

40.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 10 - 397 4.6e-65 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017176)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G62160
fragaria_vesca FvH4_1g26300
rosa_chinensis RchiOBHm_Chr3g0485971
rosa_laevigata RLG00000023118
rosa_multiflora Rmu_co8349471.1_g000001 Rmu_sc0000899.1_g000003
rosa_roxburghii Rroxscaffold_6G00396160
rosa_rugosa Rorug03G0223100
rosa_samantha Rh3AG272600 Rh3BG307200 Rh3CG305800 Rh3DG302100
rosa_wichuraiana Rw3G024170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 179
AarI CACCTGC 1 cut(s) 430
Acc36I ACCTGC 1 cut(s) 430
AccB7I CCANNNNNTGG 1 cut(s) 1244
AccI GTMKAC 1 cut(s) 322
AciI CCGC 4 cut(s) 7, 229, 783, 1211
AclI AACGTT 1 cut(s) 1106
AclWI GGATC 4 cut(s) 19, 520, 988, 1273
AcoI YGGCCR 1 cut(s) 1212
AcsI RAATTY 3 cut(s) 449, 607, 732
AcuI CTGAAG 1 cut(s) 642
AcyI GRCGYC 1 cut(s) 65
AdeI CACNNNGTG 1 cut(s) 1266
AfaI GTAC 2 cut(s) 111, 663
AfiI CCNNNNNNNGG 5 cut(s) 224, 789, 934, 1221, 1244
AflIII ACRYGT 1 cut(s) 1174
AgsI TTSAA 6 cut(s) 235, 269, 455, 724, 832, 1141
AjnI CCWGG 3 cut(s) 403, 1143, 1262
AloI GAACNNNNNNTCC 2 cut(s) 1164, 1196
AluBI AGCT 9 cut(s) 102, 265, 628, 779, 853, 944, 977, 1015, 1091
AluI AGCT 9 cut(s) 102, 265, 628, 779, 853, 944, 977, 1015, 1091
Alw26I GTCTC 1 cut(s) 588
AlwI GGATC 4 cut(s) 19, 520, 988, 1273
AlwNI CAGNNNCTG 2 cut(s) 410, 498
Ama87I CYCGRG 1 cut(s) 565
AoxI GGCC 2 cut(s) 553, 1212
ApeKI GCWGC 1 cut(s) 779
ApoI RAATTY 3 cut(s) 449, 607, 732
ArsI GACNNNNNNTTYG 2 cut(s) 1216, 1248
AspS9I GGNCC 4 cut(s) 421, 553, 706, 886
AsuHPI GGTGA 4 cut(s) 392, 454, 1158, 1252
AsuII TTCGAA 1 cut(s) 768
AsuNHI GCTAGC 1 cut(s) 973
AvaI CYCGRG 1 cut(s) 565
AvaII GGWCC 3 cut(s) 421, 706, 886
BaeGI GKGCMC 1 cut(s) 684
BbsI GAAGAC 1 cut(s) 850
BbvI GCAGC 1 cut(s) 766
BccI CCATC 5 cut(s) 407, 538, 744, 1290, 1312
BceAI ACGGC 5 cut(s) 520, 822, 858, 928, 951
BcgI CGANNNNNNTGC 4 cut(s) 293, 327, 927, 961
BciT130I CCWGG 3 cut(s) 405, 1145, 1264
BciVI GTATCC 1 cut(s) 1259
BclI TGATCA 1 cut(s) 1047
BcoDI GTCTC 1 cut(s) 588
BfaI CTAG 5 cut(s) 44, 393, 677, 974, 1256
BfuAI ACCTGC 1 cut(s) 430
BfuI GTATCC 1 cut(s) 1259
BisI GCNGC 3 cut(s) 780, 783, 1212
BlpI GCTNAGC 1 cut(s) 1011
BlsI GCNGC 3 cut(s) 781, 784, 1213
Bme1390I CCNGG 3 cut(s) 405, 1145, 1264
Bme18I GGWCC 3 cut(s) 421, 706, 886
BmeT110I CYCGRG 1 cut(s) 565
BmgT120I GGNCC 4 cut(s) 421, 553, 706, 886
BmiI GGNNCC 3 cut(s) 207, 554, 888
BmrFI CCNGG 3 cut(s) 405, 1145, 1264
BmrI ACTGGG 1 cut(s) 1142
BmsI GCATC 3 cut(s) 319, 486, 504
BmtI GCTAGC 1 cut(s) 977
BmuI ACTGGG 1 cut(s) 1142
BpiI GAAGAC 1 cut(s) 850
BpmI CTGGAG 1 cut(s) 352
Bpu10I CCTNAGC 1 cut(s) 508
Bpu1102I GCTNAGC 1 cut(s) 1011
Bpu14I TTCGAA 1 cut(s) 768
BpuEI CTTGAG 1 cut(s) 542
BsaBI GATNNNNATC 1 cut(s) 476
BsaHI GRCGYC 1 cut(s) 65
BsaJI CCNNGG 1 cut(s) 1005
BsaWI WCCGGW 1 cut(s) 27
Bsc4I CCNNNNNNNGG 5 cut(s) 224, 789, 934, 1221, 1244
Bse118I RCCGGY 1 cut(s) 106
Bse1I ACTGG 4 cut(s) 423, 578, 963, 1137
Bse3DI GCAATG 2 cut(s) 127, 893
Bse8I GATNNNNATC 1 cut(s) 476
BseBI CCWGG 3 cut(s) 405, 1145, 1264
BseDI CCNNGG 1 cut(s) 1005
BseGI GGATG 2 cut(s) 755, 1179
BseJI GATNNNNATC 1 cut(s) 476
BseLI CCNNNNNNNGG 5 cut(s) 224, 789, 934, 1221, 1244
BseMI GCAATG 2 cut(s) 127, 893
BseNI ACTGG 4 cut(s) 423, 578, 963, 1137
BseSI GKGCMC 1 cut(s) 684
BseXI GCAGC 1 cut(s) 766
BseYI CCCAGC 1 cut(s) 1087
BsgI GTGCAG 1 cut(s) 501
Bsh1285I CGRYCG 1 cut(s) 72
BshFI GGCC 2 cut(s) 555, 1214
BsiEI CGRYCG 1 cut(s) 72
BsiHKCI CYCGRG 1 cut(s) 565
BsiSI CCGG 2 cut(s) 28, 107
BslFI GGGAC 1 cut(s) 1237
BslI CCNNNNNNNGG 5 cut(s) 224, 789, 934, 1221, 1244
BsmAI GTCTC 1 cut(s) 588
BsmFI GGGAC 1 cut(s) 1237
BsnI GGCC 2 cut(s) 555, 1214
BsoBI CYCGRG 1 cut(s) 565
Bsp119I TTCGAA 1 cut(s) 768
Bsp1286I GDGCHC 1 cut(s) 684
Bsp143I GATC 7 cut(s) 24, 69, 382, 512, 993, 1047, 1278
Bsp1720I GCTNAGC 1 cut(s) 1011
BspACI CCGC 4 cut(s) 7, 229, 783, 1211
BspANI GGCC 2 cut(s) 555, 1214
BspLI GGNNCC 3 cut(s) 207, 554, 888
BspMI ACCTGC 1 cut(s) 430
BspOI GCTAGC 1 cut(s) 977
BspPI GGATC 4 cut(s) 19, 520, 988, 1273
BspQI GCTCTTC 1 cut(s) 766
BspT104I TTCGAA 1 cut(s) 768
BsrDI GCAATG 2 cut(s) 127, 893
BsrFI RCCGGY 1 cut(s) 106
BsrI ACTGG 4 cut(s) 423, 578, 963, 1137
BssAI RCCGGY 1 cut(s) 106
BssECI CCNNGG 1 cut(s) 1005
BssMI GATC 7 cut(s) 24, 69, 382, 512, 993, 1047, 1278
BssNI GRCGYC 1 cut(s) 65
BssT1I CCWWGG 1 cut(s) 1005
Bst2UI CCWGG 3 cut(s) 405, 1145, 1264
Bst4CI ACNGT 2 cut(s) 355, 653
Bst6I CTCTTC 2 cut(s) 766, 1269
BstACI GRCGYC 1 cut(s) 65
BstBI TTCGAA 1 cut(s) 768
BstC8I GCNNGC 5 cut(s) 59, 104, 684, 975, 1209
BstDEI CTNAG 4 cut(s) 113, 508, 1011, 1094
BstEII GGTNACC 1 cut(s) 1164
BstENI CCTNNNNNAGG 1 cut(s) 222
BstF5I GGATG 2 cut(s) 755, 1179
BstKTI GATC 7 cut(s) 27, 72, 385, 515, 996, 1050, 1281
BstMAI GTCTC 1 cut(s) 588
BstMBI GATC 7 cut(s) 24, 69, 382, 512, 993, 1047, 1278
BstMCI CGRYCG 1 cut(s) 72
BstMWI GCNNNNNNNGC 1 cut(s) 912
BstNI CCWGG 3 cut(s) 405, 1145, 1264
BstNSI RCATGY 2 cut(s) 140, 1178
BstPI GGTNACC 1 cut(s) 1164
BstSCI CCNGG 3 cut(s) 403, 1143, 1262
BstSLI GKGCMC 1 cut(s) 684
BstV1I GCAGC 1 cut(s) 766
BstV2I GAAGAC 1 cut(s) 850
BstX2I RGATCY 2 cut(s) 512, 1278
BstXI CCANNNNNNTGG 1 cut(s) 585
BstYI RGATCY 2 cut(s) 512, 1278
BsuI GTATCC 1 cut(s) 1259
BsuRI GGCC 2 cut(s) 555, 1214
BtsCI GGATG 2 cut(s) 755, 1179
BtsI GCAGTG 1 cut(s) 131
BtsIMutI CAGTG 2 cut(s) 131, 956
BveI ACCTGC 1 cut(s) 430
Cac8I GCNNGC 5 cut(s) 59, 104, 684, 975, 1209
CaiI CAGNNNCTG 2 cut(s) 410, 498
Cfr10I RCCGGY 1 cut(s) 106
Cfr13I GGNCC 4 cut(s) 421, 553, 706, 886
CseI GACGC 1 cut(s) 73
CsiI ACCWGGT 2 cut(s) 1143, 1262
Csp6I GTAC 2 cut(s) 110, 662
CspCI CAANNNNNGTGG 2 cut(s) 275, 310
CviAII CATG 9 cut(s) 10, 54, 137, 149, 377, 703, 1175, 1204, 1306
CviQI GTAC 2 cut(s) 110, 662
DdeI CTNAG 4 cut(s) 113, 508, 1011, 1094
DpnI GATC 7 cut(s) 26, 71, 384, 514, 995, 1049, 1280
DpnII GATC 7 cut(s) 24, 69, 382, 512, 993, 1047, 1278
DraIII CACNNNGTG 1 cut(s) 1266
EaeI YGGCCR 1 cut(s) 1212
Eam1104I CTCTTC 2 cut(s) 766, 1269
EarI CTCTTC 2 cut(s) 766, 1269
Eco130I CCWWGG 1 cut(s) 1005
Eco47I GGWCC 3 cut(s) 421, 706, 886
Eco57I CTGAAG 1 cut(s) 642
Eco88I CYCGRG 1 cut(s) 565
Eco91I GGTNACC 1 cut(s) 1164
EcoNI CCTNNNNNAGG 1 cut(s) 222
EcoO109I RGGNCCY 1 cut(s) 553
EcoO65I GGTNACC 1 cut(s) 1164
EcoRI GAATTC 1 cut(s) 607
EcoRII CCWGG 3 cut(s) 403, 1143, 1262
EcoT14I CCWWGG 1 cut(s) 1005
ErhI CCWWGG 1 cut(s) 1005
FaeI CATG 9 cut(s) 13, 57, 140, 152, 380, 706, 1178, 1207, 1309
FalI AAGNNNNNCTT 2 cut(s) 842, 874
FaqI GGGAC 1 cut(s) 1237
FatI CATG 9 cut(s) 9, 53, 136, 148, 376, 702, 1174, 1203, 1305
FauNDI CATATG 1 cut(s) 310
FbaI TGATCA 1 cut(s) 1047
FblI GTMKAC 1 cut(s) 322
Fnu4HI GCNGC 3 cut(s) 780, 783, 1212
FokI GGATG 2 cut(s) 762, 1166
Fsp4HI GCNGC 3 cut(s) 780, 783, 1212
FspBI CTAG 5 cut(s) 44, 393, 677, 974, 1256
GluI GCNGC 3 cut(s) 780, 783, 1212
GsaI CCCAGC 1 cut(s) 1091
GsuI CTGGAG 1 cut(s) 352
HaeIII GGCC 2 cut(s) 555, 1214
HapII CCGG 2 cut(s) 28, 107
HgaI GACGC 1 cut(s) 73
Hin1I GRCGYC 1 cut(s) 65
Hin1II CATG 9 cut(s) 13, 57, 140, 152, 380, 706, 1178, 1207, 1309
HindIII AAGCTT 1 cut(s) 1013
HinfI GANTC 4 cut(s) 239, 465, 740, 1137
HpaII CCGG 2 cut(s) 28, 107
HphI GGTGA 4 cut(s) 392, 454, 1158, 1252
Hpy166II GTNNAC 4 cut(s) 284, 323, 1029, 1083
Hpy188I TCNGA 6 cut(s) 91, 823, 952, 1020, 1065, 1120
Hpy188III TCNNGA 3 cut(s) 469, 604, 737
Hpy8I GTNNAC 4 cut(s) 284, 323, 1029, 1083
Hpy99I CGWCG 1 cut(s) 973
HpyAV CCTTC 1 cut(s) 179
HpyCH4III ACNGT 2 cut(s) 355, 653
HpyCH4IV ACGT 1 cut(s) 1106
HpyCH4V TGCA 7 cut(s) 4, 136, 224, 439, 518, 842, 1199
HpyF10VI GCNNNNNNNGC 1 cut(s) 912
HpyF3I CTNAG 4 cut(s) 113, 508, 1011, 1094
HpySE526I ACGT 1 cut(s) 1106
Hsp92I GRCGYC 1 cut(s) 65
Hsp92II CATG 9 cut(s) 13, 57, 140, 152, 380, 706, 1178, 1207, 1309
Ksp22I TGATCA 1 cut(s) 1047
Kzo9I GATC 7 cut(s) 24, 69, 382, 512, 993, 1047, 1278
LguI GCTCTTC 1 cut(s) 766
Lsp1109I GCAGC 1 cut(s) 766
LweI GCATC 3 cut(s) 319, 486, 504
MabI ACCWGGT 2 cut(s) 1143, 1262
MaeI CTAG 5 cut(s) 44, 393, 677, 974, 1256
MaeII ACGT 1 cut(s) 1106
MaeIII GTNAC 5 cut(s) 442, 500, 931, 1164, 1258
MalI GATC 7 cut(s) 26, 71, 384, 514, 995, 1049, 1280
MboI GATC 7 cut(s) 24, 69, 382, 512, 993, 1047, 1278
MboII GAAGA 8 cut(s) 377, 380, 592, 648, 753, 850, 916, 1286
MflI RGATCY 2 cut(s) 512, 1278
MhlI GDGCHC 1 cut(s) 684
MluCI AATT 9 cut(s) 316, 337, 398, 449, 521, 607, 732, 868, 1033
MlyI GAGTC 1 cut(s) 248
MmeI TCCRAC 1 cut(s) 801
MnlI CCTC 9 cut(s) 228, 251, 298, 370, 566, 900, 1048, 1063, 1204
MslI CAYNNNNRTG 1 cut(s) 701
MspA1I CMGCKG 1 cut(s) 1211
MspI CCGG 2 cut(s) 28, 107
MspR9I CCNGG 3 cut(s) 405, 1145, 1264
MvaI CCWGG 3 cut(s) 405, 1145, 1264
MwoI GCNNNNNNNGC 1 cut(s) 912
NdeI CATATG 1 cut(s) 310
NdeII GATC 7 cut(s) 24, 69, 382, 512, 993, 1047, 1278
NheI GCTAGC 1 cut(s) 973
NlaIII CATG 9 cut(s) 13, 57, 140, 152, 380, 706, 1178, 1207, 1309
NlaIV GGNNCC 3 cut(s) 207, 554, 888
NmuCI GTSAC 5 cut(s) 442, 500, 931, 1164, 1258
NspI RCATGY 2 cut(s) 140, 1178
NspV TTCGAA 1 cut(s) 768
PaqCI CACCTGC 1 cut(s) 430
PciI ACATGT 1 cut(s) 1174
PciSI GCTCTTC 1 cut(s) 766
PfeI GAWTC 3 cut(s) 465, 740, 1137
PflMI CCANNNNNTGG 1 cut(s) 1244
PkrI GCNGC 3 cut(s) 781, 784, 1213
Ple19I CGATCG 1 cut(s) 72
PleI GAGTC 1 cut(s) 247
PpsI GAGTC 1 cut(s) 247
PscI ACATGT 1 cut(s) 1174
PsiI TTATAA 1 cut(s) 179
Psp1406I AACGTT 1 cut(s) 1106
Psp6I CCWGG 3 cut(s) 403, 1143, 1262
PspEI GGTNACC 1 cut(s) 1164
PspFI CCCAGC 1 cut(s) 1087
PspGI CCWGG 3 cut(s) 403, 1143, 1262
PspN4I GGNNCC 3 cut(s) 207, 554, 888
PspPI GGNCC 4 cut(s) 421, 553, 706, 886
PstNI CAGNNNCTG 2 cut(s) 410, 498
PsuI RGATCY 2 cut(s) 512, 1278
PvuI CGATCG 1 cut(s) 72
RsaI GTAC 2 cut(s) 111, 663
RsaNI GTAC 2 cut(s) 110, 662
RseI CAYNNNNRTG 1 cut(s) 701
SapI GCTCTTC 1 cut(s) 766
SatI GCNGC 3 cut(s) 780, 783, 1212
Sau3AI GATC 7 cut(s) 24, 69, 382, 512, 993, 1047, 1278
Sau96I GGNCC 4 cut(s) 421, 553, 706, 886
SchI GAGTC 1 cut(s) 248
ScrFI CCNGG 3 cut(s) 405, 1145, 1264
SduI GDGCHC 1 cut(s) 684
SexAI ACCWGGT 2 cut(s) 1143, 1262
SfaNI GCATC 3 cut(s) 319, 486, 504
SfuI TTCGAA 1 cut(s) 768
SinI GGWCC 3 cut(s) 421, 706, 886
SmiMI CAYNNNNRTG 1 cut(s) 701
SmlI CTYRAG 1 cut(s) 557
SmoI CTYRAG 1 cut(s) 557
Sse9I AATT 9 cut(s) 316, 337, 398, 449, 521, 607, 732, 868, 1033
SsiI CCGC 4 cut(s) 7, 229, 783, 1211
SspMI CTAG 5 cut(s) 44, 393, 677, 974, 1256
StyD4I CCNGG 3 cut(s) 403, 1143, 1262
StyI CCWWGG 1 cut(s) 1005
TaaI ACNGT 2 cut(s) 355, 653
TaiI ACGT 1 cut(s) 1109
TaqI TCGA 7 cut(s) 96, 194, 273, 303, 768, 799, 1149
TasI AATT 9 cut(s) 316, 337, 398, 449, 521, 607, 732, 868, 1033
TauI GCSGC 2 cut(s) 785, 1214
TfiI GAWTC 3 cut(s) 465, 740, 1137
TscAI CASTG 2 cut(s) 138, 963
TseFI GTSAC 5 cut(s) 442, 500, 931, 1164, 1258
TseI GCWGC 1 cut(s) 779
Tsp45I GTSAC 5 cut(s) 442, 500, 931, 1164, 1258
TspDTI ATGAA 3 cut(s) 1116, 1289, 1325
TspGWI ACGGA 1 cut(s) 1241
TspRI CASTG 2 cut(s) 138, 963
Van91I CCANNNNNTGG 1 cut(s) 1244
VpaK11BI GGWCC 3 cut(s) 421, 706, 886
XagI CCTNNNNNAGG 1 cut(s) 222
XapI RAATTY 3 cut(s) 449, 607, 732
XceI RCATGY 2 cut(s) 140, 1178
XmiI GTMKAC 1 cut(s) 322
XspI CTAG 5 cut(s) 44, 393, 677, 974, 1256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.