Rh3DG302100

Transferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0017176
Physical Location & Seq
Reverse (-)
31887773 .. 31889952
2180 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG302100.1

Sequence Viewer

Length: 1314 bp
ATGCACCGCATGGCTTTCTCTGTGATCCGATCAAGCCAAAGCCTAGTTAGACCATGCGAGCAGACACCGATCGCCACCCTTGATTTATCGGAAATCGACAGCTTGCCCGTCCTAAGAAGCAACGCTCGAACACTGCATGTGTATAGACATGGGGAATATCACCAAGTAGCCAAACTTATAAAAGAAGGTTTGTCGAAAGCATTGGTTCCATATTACCCTCTTGCAGGACGACTGAAAGTGTCTAATGTTAATGGTGGAGGTCAGCTTCAAGTTGAATGTAGTGGACAAGGTGTGTGGTTGGTCGAGGCATATGCTAATTGTTCACTTGATGCTGTCAATTACTTTGATGATACTGTTGCCTCCCACTCGAACAAATATGATGATCTTCTTCCTCGAGGAGCTGAAGGACTTGACCTACTTCTACAAATGCAGGTGACTGAATTTGAATGTGGTGGATTCGTGGTTGGCATCAAATTCAGCCACAGCATCTGCGACGGCTTAGGATCTGCACAGTTTCTCAATGCTGTTGGCGAGATGGCAAGGGGCATCAAGCACCCGAGTATTACACCAGTAGTGTGGAAACGAGACTTCTTTACAAAATCTCTGCCCAAGCAACAGATGAATCTAAACACCACCACCACTACTACTACAGTGCCGAACTACCAGCTACAACATGCTAACATAGACATTTTCACGGACCAAATCAATTACTTGAAGCGAGAAATTCAGGAATCCACCGGCCGGAGTTGCTCTTCTTTCGAAGTTGTAGCTGCCGTGTTATGGATTTGTCGAACTAGGGCTGTGATTGTGTCAAACCACTCGAGGCAAAATACACAAGTAAAGCTGGTTTTCTTTGCTAATTGCCGTCACCTTGTCGACCCTCCGTTGCCGAAAGGCTTCTATGGAAACTGTTTCTTCCCCGTCACGGTAACAGCTTCAAGTGAAGCACTGGCTCATTCGTTACTCGCTGATGTGGTGGAAATGATCCAAGAAGCCAAGGCTAAGCTTCCAAATGAGTTTACCAATTACATCAAAGAGGGTCATCAGATTGAGGATGAGGACCCGTTTGCCCCAGCTCTAAGTTACACAACGTTGTTTATATCGGAGTGGGGAAAACTAGGATTCAACCAGGTCGATTTCGGTTGGGGGTCACCAGATCATGTCATCCCTATACAAGCCTCTGCAATCATGCCGGCTGCAATTGTGGGGACTCTACCTTTGCCACAGAAAGGTATCCGTCTAATAACTTGGTGCGTGGAAGAGATCCATCACCAAACCTTTATTGATCACATAATGAAAATGATCGGTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0016410 GO:0016740 GO:0016746 GO:0016747
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

437

Amino Acids

48.61

Weight (kDa)

6.34

Isoelectric Point (pI)

41.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 10 - 391 1.7e-64 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017176)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G62160
fragaria_vesca FvH4_1g26300
rosa_chinensis RchiOBHm_Chr3g0485971
rosa_laevigata RLG00000023118
rosa_multiflora Rmu_co8349471.1_g000001 Rmu_sc0000899.1_g000003
rosa_roxburghii Rroxscaffold_6G00396160
rosa_rugosa Rorug03G0223100
rosa_samantha Rh3AG272600 Rh3BG307200 Rh3CG305800 Rh3DG302100
rosa_wichuraiana Rw3G024170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 179
AarI CACCTGC 1 cut(s) 421
AbsI CCTCGAGG 1 cut(s) 393
Acc36I ACCTGC 1 cut(s) 421
AccI GTMKAC 1 cut(s) 876
AciI CCGC 1 cut(s) 7
AclI AACGTT 1 cut(s) 1091
AclWI GGATC 4 cut(s) 19, 511, 979, 1258
AcoI YGGCCR 1 cut(s) 739
AcsI RAATTY 3 cut(s) 440, 473, 723
AcuI CTGAAG 1 cut(s) 423
AfiI CCNNNNNNNGG 5 cut(s) 224, 741, 780, 925, 1229
AgsI TTSAA 6 cut(s) 269, 275, 446, 715, 939, 1126
AjnI CCWGG 1 cut(s) 1128
AluBI AGCT 9 cut(s) 102, 265, 401, 667, 770, 844, 935, 1006, 1076
AluI AGCT 9 cut(s) 102, 265, 401, 667, 770, 844, 935, 1006, 1076
Alw26I GTCTC 1 cut(s) 579
AlwI GGATC 4 cut(s) 19, 511, 979, 1258
AlwNI CAGNNNCTG 1 cut(s) 489
Ama87I CYCGRG 3 cut(s) 393, 556, 820
AoxI GGCC 1 cut(s) 739
ApeKI GCWGC 2 cut(s) 770, 1196
ApoI RAATTY 3 cut(s) 440, 473, 723
ArsI GACNNNNNNTTYG 2 cut(s) 1201, 1233
Asp700I GAANNNNTTC 1 cut(s) 896
AspS9I GGNCC 2 cut(s) 697, 1060
AsuHPI GGTGA 5 cut(s) 152, 445, 860, 1143, 1262
AsuII TTCGAA 1 cut(s) 759
AvaI CYCGRG 3 cut(s) 393, 556, 820
AvaII GGWCC 2 cut(s) 697, 1060
BbvI GCAGC 2 cut(s) 757, 1183
BccI CCATC 2 cut(s) 529, 1275
BceAI ACGGC 3 cut(s) 511, 758, 849
BcgI CGANNNNNNTGC 2 cut(s) 293, 327
BciT130I CCWGG 1 cut(s) 1130
BciVI GTATCC 1 cut(s) 1244
BclI TGATCA 1 cut(s) 1285
BcoDI GTCTC 1 cut(s) 579
BfaI CTAG 3 cut(s) 44, 795, 1118
BfmI CTRYAG 1 cut(s) 648
BfuAI ACCTGC 1 cut(s) 421
BfuI GTATCC 1 cut(s) 1244
BisI GCNGC 2 cut(s) 771, 1197
BlpI GCTNAGC 1 cut(s) 1002
BlsI GCNGC 2 cut(s) 772, 1198
Bme1390I CCNGG 1 cut(s) 1130
Bme18I GGWCC 2 cut(s) 697, 1060
BmeT110I CYCGRG 3 cut(s) 393, 556, 820
BmgT120I GGNCC 2 cut(s) 697, 1060
BmiI GGNNCC 2 cut(s) 207, 1062
BmrFI CCNGG 1 cut(s) 1130
BmsI GCATC 4 cut(s) 319, 477, 495, 555
Bpu10I CCTNAGC 1 cut(s) 499
Bpu1102I GCTNAGC 1 cut(s) 1002
Bpu14I TTCGAA 1 cut(s) 759
BsaJI CCNNGG 1 cut(s) 996
Bsc4I CCNNNNNNNGG 5 cut(s) 224, 741, 780, 925, 1229
Bse118I RCCGGY 2 cut(s) 737, 1192
Bse1I ACTGG 2 cut(s) 569, 954
BseBI CCWGG 1 cut(s) 1130
BseDI CCNNGG 1 cut(s) 996
BseGI GGATG 2 cut(s) 1060, 1164
BseLI CCNNNNNNNGG 5 cut(s) 224, 741, 780, 925, 1229
BseNI ACTGG 2 cut(s) 569, 954
BseRI GAGGAG 1 cut(s) 411
BseX3I CGGCCG 1 cut(s) 739
BseXI GCAGC 2 cut(s) 757, 1183
BseYI CCCAGC 1 cut(s) 1072
BsgI GTGCAG 1 cut(s) 492
Bsh1285I CGRYCG 2 cut(s) 72, 742
BshFI GGCC 1 cut(s) 741
BsiEI CGRYCG 2 cut(s) 72, 742
BsiHKCI CYCGRG 3 cut(s) 393, 556, 820
BsiSI CCGG 3 cut(s) 738, 742, 1193
BslFI GGGAC 1 cut(s) 1222
BslI CCNNNNNNNGG 5 cut(s) 224, 741, 780, 925, 1229
BsmAI GTCTC 1 cut(s) 579
BsmFI GGGAC 1 cut(s) 1222
BsnI GGCC 1 cut(s) 741
BsoBI CYCGRG 3 cut(s) 393, 556, 820
Bsp119I TTCGAA 1 cut(s) 759
Bsp1720I GCTNAGC 1 cut(s) 1002
BspACI CCGC 1 cut(s) 7
BspANI GGCC 1 cut(s) 741
BspLI GGNNCC 2 cut(s) 207, 1062
BspMI ACCTGC 1 cut(s) 421
BspPI GGATC 4 cut(s) 19, 511, 979, 1258
BspQI GCTCTTC 1 cut(s) 757
BspT104I TTCGAA 1 cut(s) 759
BsrFI RCCGGY 2 cut(s) 737, 1192
BsrI ACTGG 2 cut(s) 569, 954
BssAI RCCGGY 2 cut(s) 737, 1192
BssECI CCNNGG 1 cut(s) 996
BssT1I CCWWGG 1 cut(s) 996
Bst2UI CCWGG 1 cut(s) 1130
Bst4CI ACNGT 5 cut(s) 355, 513, 652, 911, 928
Bst6I CTCTTC 2 cut(s) 757, 1254
BstBI TTCGAA 1 cut(s) 759
BstC8I GCNNGC 3 cut(s) 59, 104, 1194
BstDEI CTNAG 4 cut(s) 113, 499, 1002, 1079
BstEII GGTNACC 1 cut(s) 1149
BstENI CCTNNNNNAGG 1 cut(s) 222
BstF5I GGATG 2 cut(s) 1060, 1164
BstMAI GTCTC 1 cut(s) 579
BstMCI CGRYCG 2 cut(s) 72, 742
BstMWI GCNNNNNNNGC 1 cut(s) 747
BstNI CCWGG 1 cut(s) 1130
BstNSI RCATGY 2 cut(s) 140, 677
BstPI GGTNACC 1 cut(s) 1149
BstSCI CCNGG 1 cut(s) 1128
BstSFI CTRYAG 1 cut(s) 648
BstV1I GCAGC 2 cut(s) 757, 1183
BstX2I RGATCY 2 cut(s) 503, 1263
BstXI CCANNNNNNTGG 1 cut(s) 576
BstYI RGATCY 2 cut(s) 503, 1263
BstZI CGGCCG 1 cut(s) 739
BsuI GTATCC 1 cut(s) 1244
BsuRI GGCC 1 cut(s) 741
BtsCI GGATG 2 cut(s) 1060, 1164
BtsI GCAGTG 1 cut(s) 131
BtsIMutI CAGTG 3 cut(s) 131, 657, 947
BveI ACCTGC 1 cut(s) 421
Cac8I GCNNGC 3 cut(s) 59, 104, 1194
CaiI CAGNNNCTG 1 cut(s) 489
Cfr10I RCCGGY 2 cut(s) 737, 1192
Cfr13I GGNCC 2 cut(s) 697, 1060
CsiI ACCWGGT 1 cut(s) 1128
CspCI CAANNNNNGTGG 2 cut(s) 275, 310
CviAII CATG 7 cut(s) 10, 54, 137, 149, 674, 1160, 1189
DdeI CTNAG 4 cut(s) 113, 499, 1002, 1079
EaeI YGGCCR 1 cut(s) 739
EagI CGGCCG 1 cut(s) 739
Eam1104I CTCTTC 2 cut(s) 757, 1254
EarI CTCTTC 2 cut(s) 757, 1254
EclXI CGGCCG 1 cut(s) 739
Eco130I CCWWGG 1 cut(s) 996
Eco47I GGWCC 2 cut(s) 697, 1060
Eco52I CGGCCG 1 cut(s) 739
Eco57I CTGAAG 1 cut(s) 423
Eco88I CYCGRG 3 cut(s) 393, 556, 820
Eco91I GGTNACC 1 cut(s) 1149
EcoNI CCTNNNNNAGG 1 cut(s) 222
EcoO109I RGGNCCY 1 cut(s) 1060
EcoO65I GGTNACC 1 cut(s) 1149
EcoRII CCWGG 1 cut(s) 1128
EcoT14I CCWWGG 1 cut(s) 996
ErhI CCWWGG 1 cut(s) 996
FaeI CATG 7 cut(s) 13, 57, 140, 152, 677, 1163, 1192
FaqI GGGAC 1 cut(s) 1222
FatI CATG 7 cut(s) 9, 53, 136, 148, 673, 1159, 1188
FauNDI CATATG 1 cut(s) 310
FbaI TGATCA 1 cut(s) 1285
FblI GTMKAC 1 cut(s) 876
Fnu4HI GCNGC 2 cut(s) 771, 1197
FokI GGATG 2 cut(s) 1067, 1151
Fsp4HI GCNGC 2 cut(s) 771, 1197
FspBI CTAG 3 cut(s) 44, 795, 1118
GluI GCNGC 2 cut(s) 771, 1197
GsaI CCCAGC 1 cut(s) 1076
HaeIII GGCC 1 cut(s) 741
HapII CCGG 3 cut(s) 738, 742, 1193
Hin1II CATG 7 cut(s) 13, 57, 140, 152, 677, 1163, 1192
HincII GTYRAC 1 cut(s) 877
HindII GTYRAC 1 cut(s) 877
HindIII AAGCTT 1 cut(s) 1004
HinfI GANTC 5 cut(s) 456, 622, 731, 1122, 1210
HpaII CCGG 3 cut(s) 738, 742, 1193
HphI GGTGA 5 cut(s) 152, 445, 860, 1143, 1262
Hpy166II GTNNAC 4 cut(s) 284, 323, 877, 1020
Hpy188I TCNGA 4 cut(s) 29, 91, 1047, 1105
Hpy188III TCNNGA 1 cut(s) 728
Hpy8I GTNNAC 4 cut(s) 284, 323, 877, 1020
Hpy99I CGWCG 1 cut(s) 497
HpyAV CCTTC 2 cut(s) 179, 398
HpyCH4III ACNGT 5 cut(s) 355, 513, 652, 911, 928
HpyCH4IV ACGT 1 cut(s) 1091
HpyCH4V TGCA 7 cut(s) 4, 136, 224, 430, 509, 1184, 1199
HpyF10VI GCNNNNNNNGC 1 cut(s) 747
HpyF3I CTNAG 4 cut(s) 113, 499, 1002, 1079
HpySE526I ACGT 1 cut(s) 1091
Hsp92II CATG 7 cut(s) 13, 57, 140, 152, 677, 1163, 1192
KroI GCCGGC 1 cut(s) 1192
KroNI GCCGGC 1 cut(s) 1194
Ksp22I TGATCA 1 cut(s) 1285
LguI GCTCTTC 1 cut(s) 757
LmnI GCTCC 1 cut(s) 398
Lsp1109I GCAGC 2 cut(s) 757, 1183
LweI GCATC 4 cut(s) 319, 477, 495, 555
MabI ACCWGGT 1 cut(s) 1128
MaeI CTAG 3 cut(s) 44, 795, 1118
MaeII ACGT 1 cut(s) 1091
MaeIII GTNAC 7 cut(s) 433, 866, 922, 928, 960, 1082, 1149
MboII GAAGA 5 cut(s) 377, 380, 744, 907, 1271
MfeI CAATTG 1 cut(s) 1200
MflI RGATCY 2 cut(s) 503, 1263
MluCI AATT 9 cut(s) 316, 337, 440, 473, 706, 723, 859, 1024, 1200
MlyI GAGTC 1 cut(s) 1204
MroNI GCCGGC 1 cut(s) 1192
MroXI GAANNNNTTC 1 cut(s) 896
MseI TTAA 1 cut(s) 249
MspI CCGG 3 cut(s) 738, 742, 1193
MspR9I CCNGG 1 cut(s) 1130
MunI CAATTG 1 cut(s) 1200
MvaI CCWGG 1 cut(s) 1130
MwoI GCNNNNNNNGC 1 cut(s) 747
NaeI GCCGGC 1 cut(s) 1194
NdeI CATATG 1 cut(s) 310
NgoMIV GCCGGC 1 cut(s) 1192
NlaIII CATG 7 cut(s) 13, 57, 140, 152, 677, 1163, 1192
NlaIV GGNNCC 2 cut(s) 207, 1062
NmuCI GTSAC 4 cut(s) 433, 866, 922, 1149
NspI RCATGY 2 cut(s) 140, 677
NspV TTCGAA 1 cut(s) 759
PaeR7I CTCGAG 2 cut(s) 393, 820
PaqCI CACCTGC 1 cut(s) 421
PciSI GCTCTTC 1 cut(s) 757
PdiI GCCGGC 1 cut(s) 1194
PdmI GAANNNNTTC 1 cut(s) 896
PfeI GAWTC 4 cut(s) 456, 622, 731, 1122
PkrI GCNGC 2 cut(s) 772, 1198
Ple19I CGATCG 1 cut(s) 72
PleI GAGTC 1 cut(s) 1204
PpsI GAGTC 1 cut(s) 1204
PpuMI RGGWCCY 1 cut(s) 1060
PsiI TTATAA 1 cut(s) 179
Psp1406I AACGTT 1 cut(s) 1091
Psp5II RGGWCCY 1 cut(s) 1060
Psp6I CCWGG 1 cut(s) 1128
PspEI GGTNACC 1 cut(s) 1149
PspFI CCCAGC 1 cut(s) 1072
PspGI CCWGG 1 cut(s) 1128
PspN4I GGNNCC 2 cut(s) 207, 1062
PspPI GGNCC 2 cut(s) 697, 1060
PspPPI RGGWCCY 1 cut(s) 1060
PspXI VCTCGAGB 2 cut(s) 393, 820
PstNI CAGNNNCTG 1 cut(s) 489
PsuI RGATCY 2 cut(s) 503, 1263
PvuI CGATCG 1 cut(s) 72
SalI GTCGAC 1 cut(s) 875
SapI GCTCTTC 1 cut(s) 757
SaqAI TTAA 1 cut(s) 249
SatI GCNGC 2 cut(s) 771, 1197
Sau96I GGNCC 2 cut(s) 697, 1060
SchI GAGTC 1 cut(s) 1204
ScrFI CCNGG 1 cut(s) 1130
SexAI ACCWGGT 1 cut(s) 1128
SfaNI GCATC 4 cut(s) 319, 477, 495, 555
SfcI CTRYAG 1 cut(s) 648
Sfr274I CTCGAG 2 cut(s) 393, 820
SfuI TTCGAA 1 cut(s) 759
SinI GGWCC 2 cut(s) 697, 1060
SlaI CTCGAG 2 cut(s) 393, 820
SmlI CTYRAG 2 cut(s) 393, 820
SmoI CTYRAG 2 cut(s) 393, 820
Sse9I AATT 9 cut(s) 316, 337, 440, 473, 706, 723, 859, 1024, 1200
SsiI CCGC 1 cut(s) 7
SspMI CTAG 3 cut(s) 44, 795, 1118
StyD4I CCNGG 1 cut(s) 1128
StyI CCWWGG 1 cut(s) 996
TaaI ACNGT 5 cut(s) 355, 513, 652, 911, 928
TaiI ACGT 1 cut(s) 1094
TasI AATT 9 cut(s) 316, 337, 440, 473, 706, 723, 859, 1024, 1200
TfiI GAWTC 4 cut(s) 456, 622, 731, 1122
Tru1I TTAA 1 cut(s) 249
Tru9I TTAA 1 cut(s) 249
TscAI CASTG 3 cut(s) 138, 657, 954
TseFI GTSAC 4 cut(s) 433, 866, 922, 1149
TseI GCWGC 2 cut(s) 770, 1196
Tsp45I GTSAC 4 cut(s) 433, 866, 922, 1149
TspDTI ATGAA 2 cut(s) 635, 1310
TspGWI ACGGA 3 cut(s) 710, 873, 1226
TspRI CASTG 3 cut(s) 138, 657, 954
VpaK11BI GGWCC 2 cut(s) 697, 1060
XagI CCTNNNNNAGG 1 cut(s) 222
XapI RAATTY 3 cut(s) 440, 473, 723
XceI RCATGY 2 cut(s) 140, 677
XhoI CTCGAG 2 cut(s) 393, 820
XmiI GTMKAC 1 cut(s) 876
XmnI GAANNNNTTC 1 cut(s) 896
XspI CTAG 3 cut(s) 44, 795, 1118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.